Coexpression cluster: Cluster_7347 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004654 polyribonucleotide nucleotidyltransferase activity 100.0% (2/2) 13.44 0.0 0.0
GO:0000957 mitochondrial RNA catabolic process 100.0% (2/2) 13.47 0.0 0.0
GO:0000958 mitochondrial mRNA catabolic process 100.0% (2/2) 13.47 0.0 0.0
GO:0000965 mitochondrial RNA 3'-end processing 100.0% (2/2) 12.86 0.0 0.0
GO:0140053 mitochondrial gene expression 100.0% (2/2) 11.93 0.0 1e-06
GO:0010467 gene expression 100.0% (2/2) 11.93 0.0 1e-06
GO:0000963 mitochondrial RNA processing 100.0% (2/2) 12.0 0.0 1e-06
GO:0000959 mitochondrial RNA metabolic process 100.0% (2/2) 10.75 0.0 4e-06
GO:0000175 3'-5'-RNA exonuclease activity 100.0% (2/2) 10.49 0.0 5e-06
GO:0004532 RNA exonuclease activity 100.0% (2/2) 10.31 1e-06 5e-06
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters 100.0% (2/2) 10.31 1e-06 5e-06
GO:0008408 3'-5' exonuclease activity 100.0% (2/2) 9.53 2e-06 1.4e-05
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 100.0% (2/2) 9.45 2e-06 1.4e-05
GO:0031123 RNA 3'-end processing 100.0% (2/2) 9.31 2e-06 1.6e-05
GO:0009570 chloroplast stroma 100.0% (2/2) 9.06 3e-06 1.9e-05
GO:0009532 plastid stroma 100.0% (2/2) 9.06 3e-06 1.9e-05
GO:0004527 exonuclease activity 100.0% (2/2) 8.99 4e-06 2e-05
GO:0006402 mRNA catabolic process 100.0% (2/2) 9.1 3e-06 2e-05
GO:0006401 RNA catabolic process 100.0% (2/2) 8.85 5e-06 2.2e-05
GO:0004540 RNA nuclease activity 100.0% (2/2) 8.1 1.3e-05 6.1e-05
GO:0016779 nucleotidyltransferase activity 100.0% (2/2) 7.9 1.8e-05 6.9e-05
GO:0010629 negative regulation of gene expression 100.0% (2/2) 7.93 1.7e-05 7e-05
GO:0044270 cellular nitrogen compound catabolic process 100.0% (2/2) 7.83 1.9e-05 7e-05
GO:0046700 heterocycle catabolic process 100.0% (2/2) 7.83 1.9e-05 7e-05
GO:0034655 nucleobase-containing compound catabolic process 100.0% (2/2) 7.95 1.6e-05 7e-05
GO:1901361 organic cyclic compound catabolic process 100.0% (2/2) 7.63 2.5e-05 8.5e-05
GO:0019439 aromatic compound catabolic process 100.0% (2/2) 7.66 2.4e-05 8.6e-05
GO:0009890 negative regulation of biosynthetic process 100.0% (2/2) 7.52 3e-05 9.1e-05
GO:0010558 negative regulation of macromolecule biosynthetic process 100.0% (2/2) 7.56 2.8e-05 9.1e-05
GO:0004518 nuclease activity 100.0% (2/2) 7.48 3.1e-05 9.2e-05
GO:0031327 negative regulation of cellular biosynthetic process 100.0% (2/2) 7.52 3e-05 9.3e-05
GO:0016071 mRNA metabolic process 100.0% (2/2) 7.44 3.3e-05 9.5e-05
GO:0009892 negative regulation of metabolic process 100.0% (2/2) 7.36 3.7e-05 9.7e-05
GO:0010605 negative regulation of macromolecule metabolic process 100.0% (2/2) 7.39 3.6e-05 9.8e-05
GO:0031324 negative regulation of cellular metabolic process 100.0% (2/2) 7.37 3.7e-05 9.8e-05
GO:0005739 mitochondrion 100.0% (2/2) 7.09 5.4e-05 0.000136
GO:0048523 negative regulation of cellular process 100.0% (2/2) 6.99 6.2e-05 0.000153
GO:0048519 negative regulation of biological process 100.0% (2/2) 6.96 6.4e-05 0.000154
GO:0009057 macromolecule catabolic process 100.0% (2/2) 6.79 8.2e-05 0.000191
GO:0044248 cellular catabolic process 100.0% (2/2) 6.61 0.000104 0.000237
GO:0140098 catalytic activity, acting on RNA 100.0% (2/2) 6.42 0.000136 0.000301
GO:0006396 RNA processing 100.0% (2/2) 6.38 0.000145 0.000314
GO:0009059 macromolecule biosynthetic process 100.0% (2/2) 6.31 0.000159 0.000337
GO:0005829 cytosol 100.0% (2/2) 6.14 0.000201 0.000416
GO:1901575 organic substance catabolic process 100.0% (2/2) 5.86 0.000297 0.000602
GO:0016788 hydrolase activity, acting on ester bonds 100.0% (2/2) 5.78 0.000333 0.000644
GO:0009056 catabolic process 100.0% (2/2) 5.79 0.000329 0.00065
GO:0140640 catalytic activity, acting on a nucleic acid 100.0% (2/2) 5.63 0.000406 0.000771
GO:0003723 RNA binding 100.0% (2/2) 5.5 0.000485 0.000901
GO:0016070 RNA metabolic process 100.0% (2/2) 5.36 0.000589 0.001072
GO:0044249 cellular biosynthetic process 100.0% (2/2) 5.05 0.000908 0.00162
GO:0009889 regulation of biosynthetic process 100.0% (2/2) 4.98 0.001001 0.001656
GO:0010556 regulation of macromolecule biosynthetic process 100.0% (2/2) 5.01 0.000964 0.001656
GO:0010468 regulation of gene expression 100.0% (2/2) 5.02 0.000951 0.001665
GO:0031326 regulation of cellular biosynthetic process 100.0% (2/2) 4.98 0.000999 0.001684
GO:1901576 organic substance biosynthetic process 100.0% (2/2) 4.93 0.001074 0.001745
GO:0009058 biosynthetic process 100.0% (2/2) 4.86 0.001191 0.001837
GO:0031323 regulation of cellular metabolic process 100.0% (2/2) 4.87 0.001171 0.001837
GO:0060255 regulation of macromolecule metabolic process 100.0% (2/2) 4.88 0.001157 0.001847
GO:0019222 regulation of metabolic process 100.0% (2/2) 4.82 0.001247 0.001892
GO:0090304 nucleic acid metabolic process 100.0% (2/2) 4.65 0.001597 0.002383
GO:0016772 transferase activity, transferring phosphorus-containing groups 100.0% (2/2) 4.57 0.001776 0.002607
GO:0006139 nucleobase-containing compound metabolic process 100.0% (2/2) 4.41 0.002208 0.003189
GO:0050794 regulation of cellular process 100.0% (2/2) 4.31 0.002541 0.003557
GO:0046483 heterocycle metabolic process 100.0% (2/2) 4.31 0.002534 0.003603
GO:0006725 cellular aromatic compound metabolic process 100.0% (2/2) 4.28 0.002653 0.003658
GO:1901360 organic cyclic compound metabolic process 100.0% (2/2) 4.24 0.002811 0.003762
GO:0034641 cellular nitrogen compound metabolic process 100.0% (2/2) 4.23 0.002857 0.003768
GO:0050789 regulation of biological process 100.0% (2/2) 4.24 0.002804 0.003809
GO:0016787 hydrolase activity 100.0% (2/2) 4.19 0.003007 0.003909
GO:0065007 biological regulation 100.0% (2/2) 4.14 0.003232 0.004142
GO:0003676 nucleic acid binding 100.0% (2/2) 3.93 0.004321 0.005461
GO:0043231 intracellular membrane-bounded organelle 100.0% (2/2) 3.83 0.004919 0.006132
GO:0043227 membrane-bounded organelle 100.0% (2/2) 3.82 0.004993 0.006141
GO:0016740 transferase activity 100.0% (2/2) 3.69 0.006004 0.007285
GO:0043226 organelle 100.0% (2/2) 3.62 0.006651 0.00786
GO:0043229 intracellular organelle 100.0% (2/2) 3.62 0.00665 0.007962
GO:0043170 macromolecule metabolic process 100.0% (2/2) 3.2 0.011854 0.01383
GO:0044237 cellular metabolic process 100.0% (2/2) 3.09 0.01375 0.015839
GO:0006807 nitrogen compound metabolic process 100.0% (2/2) 3.05 0.014562 0.016564
GO:0044238 primary metabolic process 100.0% (2/2) 2.8 0.020711 0.022984
GO:0097159 organic cyclic compound binding 100.0% (2/2) 2.8 0.020611 0.023155
GO:0071704 organic substance metabolic process 100.0% (2/2) 2.71 0.023373 0.025626
GO:0008152 metabolic process 100.0% (2/2) 2.64 0.025737 0.027882
GO:0110165 cellular anatomical entity 100.0% (2/2) 2.5 0.031232 0.033436
GO:0003824 catalytic activity 100.0% (2/2) 2.47 0.032758 0.034663
GO:0009987 cellular process 100.0% (2/2) 2.44 0.033939 0.0355
GO:0005575 cellular_component 100.0% (2/2) 2.32 0.039968 0.041331
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (2) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms