Coexpression cluster: Cluster_49 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043226 organelle 43.48% (40/92) 2.41 0.0 0.0
GO:0043229 intracellular organelle 43.48% (40/92) 2.41 0.0 0.0
GO:0045296 cadherin binding 6.52% (6/92) 10.8 0.0 0.0
GO:0005575 cellular_component 61.96% (57/92) 1.63 0.0 0.0
GO:0050839 cell adhesion molecule binding 6.52% (6/92) 10.21 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 38.04% (35/92) 2.44 0.0 0.0
GO:0043227 membrane-bounded organelle 38.04% (35/92) 2.43 0.0 0.0
GO:0005634 nucleus 28.26% (26/92) 2.93 0.0 0.0
GO:0110165 cellular anatomical entity 51.09% (47/92) 1.53 0.0 0.0
GO:0005654 nucleoplasm 7.61% (7/92) 6.73 0.0 0.0
GO:0006997 nucleus organization 5.43% (5/92) 8.79 0.0 0.0
GO:0141047 molecular tag activity 4.35% (4/92) 6.51 0.0 4e-06
GO:0031386 protein tag activity 4.35% (4/92) 6.51 0.0 4e-06
GO:0006396 RNA processing 10.87% (10/92) 3.17 0.0 5e-06
GO:0031625 ubiquitin protein ligase binding 4.35% (4/92) 5.88 1e-06 2.1e-05
GO:0044389 ubiquitin-like protein ligase binding 4.35% (4/92) 5.84 1e-06 2.1e-05
GO:0005739 mitochondrion 7.61% (7/92) 3.37 6e-06 0.000135
GO:0016070 RNA metabolic process 11.96% (11/92) 2.3 1.5e-05 0.000332
GO:0005730 nucleolus 5.43% (5/92) 3.96 2e-05 0.000407
GO:0009959 negative gravitropism 2.17% (2/92) 8.03 2.8e-05 0.00056
GO:0006364 rRNA processing 5.43% (5/92) 3.8 3.4e-05 0.000634
GO:0016072 rRNA metabolic process 5.43% (5/92) 3.68 4.9e-05 0.000877
GO:0140513 nuclear protein-containing complex 8.7% (8/92) 2.54 7.5e-05 0.001286
GO:0071840 cellular component organization or biogenesis 11.96% (11/92) 2.02 8.7e-05 0.001385
GO:0005681 spliceosomal complex 4.35% (4/92) 4.12 9.2e-05 0.001403
GO:0032991 protein-containing complex 15.22% (14/92) 1.72 8.6e-05 0.00142
GO:0009630 gravitropism 2.17% (2/92) 6.92 0.000133 0.001875
GO:0009629 response to gravity 2.17% (2/92) 6.92 0.000133 0.001875
GO:1990904 ribonucleoprotein complex 6.52% (6/92) 2.92 0.000152 0.002076
GO:0016043 cellular component organization 10.87% (10/92) 2.04 0.000167 0.002207
GO:0090304 nucleic acid metabolic process 13.04% (12/92) 1.71 0.000307 0.0038
GO:0051603 proteolysis involved in protein catabolic process 5.43% (5/92) 3.1 0.000317 0.003808
GO:0019899 enzyme binding 4.35% (4/92) 3.66 0.000305 0.003894
GO:0006397 mRNA processing 4.35% (4/92) 3.62 0.000344 0.004011
GO:0009606 tropism 2.17% (2/92) 6.17 0.000371 0.004197
GO:0005515 protein binding 18.48% (17/92) 1.3 0.000448 0.004668
GO:0009639 response to red or far red light 2.17% (2/92) 6.04 0.000443 0.004746
GO:0008150 biological_process 44.57% (41/92) 0.68 0.000435 0.004781
GO:0034470 ncRNA processing 5.43% (5/92) 2.92 0.000563 0.005721
GO:0009987 cellular process 32.61% (30/92) 0.82 0.000794 0.007672
GO:0005737 cytoplasm 10.87% (10/92) 1.75 0.000781 0.007729
GO:0000398 mRNA splicing, via spliceosome 3.26% (3/92) 4.05 0.000845 0.007965
GO:0003723 RNA binding 8.7% (8/92) 1.98 0.000998 0.008986
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.26% (3/92) 3.97 0.000987 0.009087
GO:0006139 nucleobase-containing compound metabolic process 13.04% (12/92) 1.47 0.001265 0.010434
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.17% (2/92) 5.29 0.001255 0.010571
GO:0000375 RNA splicing, via transesterification reactions 3.26% (3/92) 3.85 0.001237 0.010648
GO:0019941 modification-dependent protein catabolic process 4.35% (4/92) 3.12 0.001226 0.01079
GO:0043337 cardiolipin synthase (CMP-forming) 1.09% (1/92) 9.5 0.001377 0.010906
GO:0030572 phosphatidyltransferase activity 1.09% (1/92) 9.5 0.001377 0.010906
GO:0043632 modification-dependent macromolecule catabolic process 4.35% (4/92) 3.06 0.001426 0.011073
GO:0008380 RNA splicing 3.26% (3/92) 3.62 0.001948 0.014836
GO:0016071 mRNA metabolic process 4.35% (4/92) 2.91 0.002069 0.014899
GO:0006996 organelle organization 6.52% (6/92) 2.21 0.002011 0.015025
GO:0030686 90S preribosome 2.17% (2/92) 4.92 0.002068 0.015164
GO:0030490 maturation of SSU-rRNA 2.17% (2/92) 4.87 0.002201 0.015565
GO:0046483 heterocycle metabolic process 13.04% (12/92) 1.37 0.002248 0.01562
GO:0034088 maintenance of mitotic sister chromatid cohesion 1.09% (1/92) 8.67 0.002447 0.016422
GO:0034660 ncRNA metabolic process 5.43% (5/92) 2.44 0.002435 0.016624
GO:0060628 regulation of ER to Golgi vesicle-mediated transport 1.09% (1/92) 8.59 0.002599 0.017157
GO:0006725 cellular aromatic compound metabolic process 13.04% (12/92) 1.34 0.002713 0.017613
GO:0140034 methylation-dependent protein binding 1.09% (1/92) 8.28 0.00321 0.020178
GO:0035064 methylated histone binding 1.09% (1/92) 8.28 0.00321 0.020178
GO:1901360 organic cyclic compound metabolic process 13.04% (12/92) 1.3 0.003427 0.021205
GO:0016567 protein ubiquitination 4.35% (4/92) 2.69 0.003555 0.02166
GO:0034641 cellular nitrogen compound metabolic process 13.04% (12/92) 1.29 0.003656 0.021933
GO:0001096 TFIIF-class transcription factor complex binding 1.09% (1/92) 7.92 0.004125 0.024383
GO:0032446 protein modification by small protein conjugation 4.35% (4/92) 2.62 0.0043 0.025043
GO:0043170 macromolecule metabolic process 20.65% (19/92) 0.92 0.004455 0.025205
GO:0017177 glucosidase II complex 1.09% (1/92) 7.82 0.00443 0.025427
GO:0032545 CURI complex 1.09% (1/92) 7.72 0.004735 0.025687
GO:0034456 UTP-C complex 1.09% (1/92) 7.72 0.004735 0.025687
GO:0140663 ATP-dependent FeS chaperone activity 1.09% (1/92) 7.72 0.004735 0.025687
GO:0005674 transcription factor TFIIF complex 1.09% (1/92) 7.59 0.005192 0.027054
GO:0004298 threonine-type endopeptidase activity 1.09% (1/92) 7.59 0.005192 0.027054
GO:0005488 binding 34.78% (32/92) 0.62 0.005108 0.027336
GO:0004430 1-phosphatidylinositol 4-kinase activity 1.09% (1/92) 7.54 0.005345 0.027486
GO:0032048 cardiolipin metabolic process 1.09% (1/92) 7.5 0.005497 0.027554
GO:0032049 cardiolipin biosynthetic process 1.09% (1/92) 7.5 0.005497 0.027554
GO:0043228 non-membrane-bounded organelle 5.43% (5/92) 2.12 0.006098 0.029811
GO:0043232 intracellular non-membrane-bounded organelle 5.43% (5/92) 2.12 0.006094 0.030167
GO:0032116 SMC loading complex 1.09% (1/92) 7.28 0.00641 0.030956
GO:0070939 Dsl1/NZR complex 1.09% (1/92) 7.12 0.00717 0.033018
GO:0006369 termination of RNA polymerase II transcription 1.09% (1/92) 7.15 0.007018 0.033087
GO:0034086 maintenance of sister chromatid cohesion 1.09% (1/92) 7.15 0.007018 0.033087
GO:0003676 nucleic acid binding 14.13% (13/92) 1.1 0.007158 0.03335
GO:0140534 endoplasmic reticulum protein-containing complex 2.17% (2/92) 3.91 0.007987 0.036353
GO:0042393 histone binding 2.17% (2/92) 3.86 0.008578 0.037331
GO:0006491 N-glycan processing 1.09% (1/92) 6.84 0.00869 0.037403
GO:0009416 response to light stimulus 2.17% (2/92) 3.88 0.008325 0.037463
GO:0046471 phosphatidylglycerol metabolic process 1.09% (1/92) 6.87 0.008538 0.037566
GO:0006655 phosphatidylglycerol biosynthetic process 1.09% (1/92) 6.87 0.008538 0.037566
GO:0003989 acetyl-CoA carboxylase activity 1.09% (1/92) 6.77 0.009145 0.038525
GO:0016530 metallochaperone activity 1.09% (1/92) 6.77 0.009145 0.038525
GO:0070647 protein modification by small protein conjugation or removal 4.35% (4/92) 2.28 0.00951 0.039229
GO:0006353 DNA-templated transcription termination 1.09% (1/92) 6.72 0.009448 0.039384
GO:0009314 response to radiation 2.17% (2/92) 3.77 0.009665 0.039457
GO:0009057 macromolecule catabolic process 4.35% (4/92) 2.27 0.00993 0.040127
GO:0006508 proteolysis 5.43% (5/92) 1.94 0.010134 0.040534
GO:0044238 primary metabolic process 23.91% (22/92) 0.73 0.010247 0.04058
GO:0070003 threonine-type peptidase activity 1.09% (1/92) 6.46 0.011267 0.044174
GO:2000779 regulation of double-strand break repair 1.09% (1/92) 6.44 0.011418 0.044329
GO:0032386 regulation of intracellular transport 1.09% (1/92) 6.41 0.011721 0.045062
GO:0006807 nitrogen compound metabolic process 20.65% (19/92) 0.78 0.013005 0.049045
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.09% (1/92) 6.26 0.012931 0.049236
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (92) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms