Coexpression cluster: Cluster_504 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor 10.78% (11/102) 8.5 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 10.78% (11/102) 6.39 0.0 0.0
GO:0016174 NAD(P)H oxidase H2O2-forming activity 7.84% (8/102) 8.35 0.0 0.0
GO:0016491 oxidoreductase activity 21.57% (22/102) 2.95 0.0 0.0
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 3.92% (4/102) 8.94 0.0 0.0
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 3.92% (4/102) 8.94 0.0 0.0
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 8.82% (9/102) 4.39 0.0 0.0
GO:0008172 S-methyltransferase activity 3.92% (4/102) 8.24 0.0 0.0
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 8.82% (9/102) 4.25 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 6.86% (7/102) 3.72 1e-06 2.3e-05
GO:0016053 organic acid biosynthetic process 6.86% (7/102) 3.72 1e-06 2.3e-05
GO:0044283 small molecule biosynthetic process 7.84% (8/102) 3.35 1e-06 2.3e-05
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 4.9% (5/102) 4.48 4e-06 4.7e-05
GO:0004601 peroxidase activity 4.9% (5/102) 4.48 4e-06 4.7e-05
GO:0009086 methionine biosynthetic process 2.94% (3/102) 6.79 3e-06 4.8e-05
GO:0006555 methionine metabolic process 2.94% (3/102) 6.67 4e-06 5e-05
GO:0016209 antioxidant activity 4.9% (5/102) 4.27 7e-06 8.3e-05
GO:0008652 amino acid biosynthetic process 4.9% (5/102) 4.14 1.1e-05 0.000122
GO:0006520 amino acid metabolic process 6.86% (7/102) 3.15 1.6e-05 0.000167
GO:0010005 cortical microtubule, transverse to long axis 1.96% (2/102) 8.35 1.8e-05 0.00018
GO:0000097 sulfur amino acid biosynthetic process 2.94% (3/102) 5.67 3.1e-05 0.000298
GO:0000096 sulfur amino acid metabolic process 2.94% (3/102) 5.55 4e-05 0.00037
GO:1901566 organonitrogen compound biosynthetic process 7.84% (8/102) 2.66 4.4e-05 0.000384
GO:0009067 aspartate family amino acid biosynthetic process 2.94% (3/102) 5.23 7.7e-05 0.000645
GO:0043622 cortical microtubule organization 1.96% (2/102) 6.92 0.000131 0.001057
GO:1901607 alpha-amino acid biosynthetic process 3.92% (4/102) 3.93 0.000151 0.001167
GO:0009066 aspartate family amino acid metabolic process 2.94% (3/102) 4.88 0.000159 0.001182
GO:0045551 cinnamyl-alcohol dehydrogenase activity 1.96% (2/102) 6.74 0.000169 0.001213
GO:0055028 cortical microtubule 1.96% (2/102) 6.63 0.000198 0.00137
GO:0009809 lignin biosynthetic process 1.96% (2/102) 6.49 0.000239 0.001604
GO:0046872 metal ion binding 10.78% (11/102) 1.82 0.000299 0.001936
GO:0030865 cortical cytoskeleton organization 1.96% (2/102) 6.28 0.000322 0.002022
GO:0043169 cation binding 10.78% (11/102) 1.78 0.000373 0.002273
GO:0016741 transferase activity, transferring one-carbon groups 4.9% (5/102) 3.01 0.000423 0.002498
GO:0006790 sulfur compound metabolic process 3.92% (4/102) 3.5 0.000469 0.002696
GO:0009808 lignin metabolic process 1.96% (2/102) 5.9 0.000539 0.003009
GO:0031122 cytoplasmic microtubule organization 1.96% (2/102) 5.82 0.000606 0.003292
GO:0005509 calcium ion binding 3.92% (4/102) 3.39 0.000627 0.003319
GO:0044272 sulfur compound biosynthetic process 2.94% (3/102) 4.16 0.000674 0.003473
GO:0006082 organic acid metabolic process 6.86% (7/102) 2.23 0.000782 0.003655
GO:0005881 cytoplasmic microtubule 1.96% (2/102) 5.61 0.000803 0.00367
GO:0043436 oxoacid metabolic process 6.86% (7/102) 2.23 0.000778 0.003724
GO:0019752 carboxylic acid metabolic process 6.86% (7/102) 2.24 0.000765 0.003753
GO:0044281 small molecule metabolic process 8.82% (9/102) 1.89 0.000756 0.003801
GO:1901605 alpha-amino acid metabolic process 3.92% (4/102) 3.26 0.000868 0.003878
GO:0009699 phenylpropanoid biosynthetic process 1.96% (2/102) 5.53 0.000898 0.003925
GO:0005886 plasma membrane 7.84% (8/102) 1.99 0.000955 0.004083
GO:0044249 cellular biosynthetic process 9.8% (10/102) 1.7 0.001051 0.004401
GO:0008270 zinc ion binding 5.88% (6/102) 2.35 0.001225 0.005024
GO:0009698 phenylpropanoid metabolic process 1.96% (2/102) 5.19 0.001423 0.005721
GO:0003824 catalytic activity 30.39% (31/102) 0.75 0.001765 0.006958
GO:0004013 adenosylhomocysteinase activity 0.98% (1/102) 8.94 0.002035 0.007437
GO:0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity 0.98% (1/102) 8.94 0.002035 0.007437
GO:0033353 S-adenosylmethionine cycle 0.98% (1/102) 8.94 0.002035 0.007437
GO:1901576 organic substance biosynthetic process 9.8% (10/102) 1.58 0.001952 0.007544
GO:0009073 aromatic amino acid family biosynthetic process 1.96% (2/102) 4.82 0.002363 0.008483
GO:0044550 secondary metabolite biosynthetic process 1.96% (2/102) 4.75 0.00259 0.009133
GO:0009058 biosynthetic process 9.8% (10/102) 1.51 0.002833 0.009818
GO:0008168 methyltransferase activity 3.92% (4/102) 2.75 0.003126 0.010651
GO:0046508 hydrolase activity, acting on carbon-sulfur bonds 0.98% (1/102) 8.28 0.00322 0.010787
GO:0006166 purine ribonucleoside salvage 0.98% (1/102) 7.35 0.006093 0.019134
GO:0043174 nucleoside salvage 0.98% (1/102) 7.35 0.006093 0.019134
GO:0046914 transition metal ion binding 6.86% (7/102) 1.7 0.005959 0.019317
GO:0004001 adenosine kinase activity 0.98% (1/102) 7.4 0.005924 0.019519
GO:0019264 glycine biosynthetic process from serine 0.98% (1/102) 7.13 0.007104 0.020695
GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity 0.98% (1/102) 7.13 0.007104 0.020695
GO:0004372 glycine hydroxymethyltransferase activity 0.98% (1/102) 7.13 0.007104 0.020695
GO:0070905 serine binding 0.98% (1/102) 7.13 0.007104 0.020695
GO:0019438 aromatic compound biosynthetic process 4.9% (5/102) 2.08 0.006814 0.02107
GO:0009072 aromatic amino acid metabolic process 1.96% (2/102) 3.92 0.007876 0.022615
GO:0042455 ribonucleoside biosynthetic process 0.98% (1/102) 6.82 0.008789 0.022942
GO:0034404 nucleobase-containing small molecule biosynthetic process 0.98% (1/102) 6.82 0.008789 0.022942
GO:0009163 nucleoside biosynthetic process 0.98% (1/102) 6.82 0.008789 0.022942
GO:0046128 purine ribonucleoside metabolic process 0.98% (1/102) 6.82 0.008789 0.022942
GO:0046129 purine ribonucleoside biosynthetic process 0.98% (1/102) 6.82 0.008789 0.022942
GO:0042451 purine nucleoside biosynthetic process 0.98% (1/102) 6.82 0.008789 0.022942
GO:0019748 secondary metabolic process 1.96% (2/102) 3.83 0.008978 0.023136
GO:0009119 ribonucleoside metabolic process 0.98% (1/102) 6.74 0.009293 0.023645
GO:0006565 L-serine catabolic process 0.98% (1/102) 6.88 0.008452 0.023927
GO:0046500 S-adenosylmethionine metabolic process 0.98% (1/102) 6.69 0.00963 0.024194
GO:0046655 folic acid metabolic process 0.98% (1/102) 6.67 0.009798 0.024313
GO:1901362 organic cyclic compound biosynthetic process 4.9% (5/102) 1.93 0.010339 0.025039
GO:0019206 nucleoside kinase activity 0.98% (1/102) 6.57 0.01047 0.025053
GO:0043648 dicarboxylic acid metabolic process 1.96% (2/102) 3.72 0.010276 0.02519
GO:0050897 cobalt ion binding 0.98% (1/102) 6.31 0.012484 0.02952
GO:1901659 glycosyl compound biosynthetic process 0.98% (1/102) 6.3 0.012651 0.029569
GO:0016597 amino acid binding 0.98% (1/102) 6.28 0.012819 0.029616
GO:0009423 chorismate biosynthetic process 0.98% (1/102) 6.24 0.013154 0.030045
GO:0009071 serine family amino acid catabolic process 0.98% (1/102) 6.12 0.014326 0.032355
GO:0005874 microtubule 1.96% (2/102) 3.4 0.015779 0.03524
GO:0035999 tetrahydrofolate interconversion 0.98% (1/102) 5.91 0.016499 0.036443
GO:0046417 chorismate metabolic process 0.98% (1/102) 5.88 0.016833 0.036777
GO:0042278 purine nucleoside metabolic process 0.98% (1/102) 5.82 0.017501 0.037824
GO:0099081 supramolecular polymer 1.96% (2/102) 3.27 0.018637 0.03902
GO:0099512 supramolecular fiber 1.96% (2/102) 3.27 0.018637 0.03902
GO:0099513 polymeric cytoskeletal fiber 1.96% (2/102) 3.27 0.018551 0.039668
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 0.98% (1/102) 5.48 0.02216 0.045451
GO:0006545 glycine biosynthetic process 0.98% (1/102) 5.48 0.02216 0.045451
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (102) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms