Coexpression cluster: Cluster_781 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009059 macromolecule biosynthetic process 11.11% (8/72) 3.14 4e-06 0.000415
GO:0010476 gibberellin mediated signaling pathway 2.78% (2/72) 9.57 3e-06 0.00054
GO:0009740 gibberellic acid mediated signaling pathway 2.78% (2/72) 9.57 3e-06 0.00054
GO:0009521 photosystem 4.17% (3/72) 6.17 1.1e-05 0.000615
GO:0044271 cellular nitrogen compound biosynthetic process 11.11% (8/72) 2.87 1.4e-05 0.000679
GO:0009299 mRNA transcription 2.78% (2/72) 8.7 1.1e-05 0.000729
GO:0010026 trichome differentiation 2.78% (2/72) 8.74 1e-05 0.000866
GO:0010090 trichome morphogenesis 2.78% (2/72) 8.22 2.2e-05 0.000898
GO:0019684 photosynthesis, light reaction 2.78% (2/72) 8.05 2.8e-05 0.001012
GO:0005840 ribosome 5.56% (4/72) 4.49 3.4e-05 0.001121
GO:0003735 structural constituent of ribosome 5.56% (4/72) 4.26 6.2e-05 0.001866
GO:0006412 translation 5.56% (4/72) 4.08 0.0001 0.002535
GO:0006351 DNA-templated transcription 5.56% (4/72) 4.11 9.4e-05 0.00258
GO:0043043 peptide biosynthetic process 5.56% (4/72) 3.96 0.000138 0.003274
GO:0032502 developmental process 5.56% (4/72) 3.9 0.00016 0.003536
GO:0006518 peptide metabolic process 5.56% (4/72) 3.7 0.000271 0.00561
GO:1990837 sequence-specific double-stranded DNA binding 5.56% (4/72) 3.5 0.000462 0.006369
GO:0034641 cellular nitrogen compound metabolic process 16.67% (12/72) 1.64 0.000414 0.006524
GO:0044237 cellular metabolic process 26.39% (19/72) 1.17 0.000495 0.006558
GO:0009736 cytokinin-activated signaling pathway 2.78% (2/72) 6.02 0.000457 0.00657
GO:0030154 cell differentiation 2.78% (2/72) 6.24 0.000338 0.006588
GO:0032774 RNA biosynthetic process 5.56% (4/72) 3.59 0.00036 0.006613
GO:0000902 cell morphogenesis 2.78% (2/72) 6.04 0.000446 0.006711
GO:0043604 amide biosynthetic process 5.56% (4/72) 3.56 0.000387 0.006745
GO:0005198 structural molecule activity 5.56% (4/72) 3.54 0.000412 0.006826
GO:0009653 anatomical structure morphogenesis 2.78% (2/72) 5.66 0.000754 0.009595
GO:0016071 mRNA metabolic process 5.56% (4/72) 3.27 0.000835 0.010231
GO:0007275 multicellular organism development 2.78% (2/72) 5.42 0.001042 0.012318
GO:0043603 amide metabolic process 5.56% (4/72) 3.14 0.001144 0.012626
GO:0048869 cellular developmental process 2.78% (2/72) 5.37 0.001122 0.012812
GO:0044249 cellular biosynthetic process 11.11% (8/72) 1.88 0.001459 0.015092
GO:0015979 photosynthesis 2.78% (2/72) 5.19 0.00143 0.015269
GO:0098796 membrane protein complex 5.56% (4/72) 2.99 0.00168 0.016851
GO:0016070 RNA metabolic process 9.72% (7/72) 2.0 0.001839 0.017899
GO:0036440 citrate synthase activity 1.39% (1/72) 8.86 0.002154 0.018285
GO:0004108 citrate (Si)-synthase activity 1.39% (1/72) 8.86 0.002154 0.018285
GO:0003690 double-stranded DNA binding 5.56% (4/72) 2.92 0.002012 0.019031
GO:0043228 non-membrane-bounded organelle 6.94% (5/72) 2.47 0.002127 0.019032
GO:0043232 intracellular non-membrane-bounded organelle 6.94% (5/72) 2.47 0.002126 0.01955
GO:1901576 organic substance biosynthetic process 11.11% (8/72) 1.76 0.002458 0.02034
GO:0006091 generation of precursor metabolites and energy 4.17% (3/72) 3.45 0.002736 0.02209
GO:0022900 electron transport chain 2.78% (2/72) 4.63 0.00303 0.023325
GO:0016168 chlorophyll binding 1.39% (1/72) 8.38 0.002991 0.023573
GO:0016779 nucleotidyltransferase activity 4.17% (3/72) 3.31 0.003537 0.024911
GO:0034654 nucleobase-containing compound biosynthetic process 5.56% (4/72) 2.7 0.00348 0.02504
GO:0009058 biosynthetic process 11.11% (8/72) 1.69 0.00337 0.025353
GO:0008152 metabolic process 29.17% (21/72) 0.86 0.003679 0.025372
GO:0007584 response to nutrient 1.39% (1/72) 8.17 0.003469 0.025515
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.78% (2/72) 4.43 0.003969 0.026276
GO:0009987 cellular process 31.94% (23/72) 0.79 0.004105 0.026643
GO:0016651 oxidoreductase activity, acting on NAD(P)H 2.78% (2/72) 4.44 0.003959 0.026745
GO:1990204 oxidoreductase complex 2.78% (2/72) 4.37 0.004305 0.027403
GO:0001067 transcription regulatory region nucleic acid binding 4.17% (3/72) 3.19 0.004486 0.027498
GO:0000976 transcription cis-regulatory region binding 4.17% (3/72) 3.19 0.004486 0.027498
GO:0009416 response to light stimulus 2.78% (2/72) 4.24 0.005183 0.030098
GO:0110165 cellular anatomical entity 30.56% (22/72) 0.79 0.00534 0.030474
GO:0043226 organelle 18.06% (13/72) 1.15 0.005158 0.030485
GO:0005575 cellular_component 33.33% (24/72) 0.74 0.005467 0.030668
GO:0043229 intracellular organelle 18.06% (13/72) 1.15 0.005153 0.031013
GO:0043565 sequence-specific DNA binding 5.56% (4/72) 2.46 0.006194 0.032544
GO:0034062 5'-3' RNA polymerase activity 2.78% (2/72) 4.11 0.006136 0.03276
GO:0097747 RNA polymerase activity 2.78% (2/72) 4.11 0.006136 0.03276
GO:0009314 response to radiation 2.78% (2/72) 4.12 0.006027 0.033247
GO:0009755 hormone-mediated signaling pathway 2.78% (2/72) 4.06 0.006546 0.033854
GO:0070181 small ribosomal subunit rRNA binding 1.39% (1/72) 7.1 0.007283 0.037086
GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex 1.39% (1/72) 7.0 0.007759 0.037766
GO:0030062 mitochondrial tricarboxylic acid cycle enzyme complex 1.39% (1/72) 7.0 0.007759 0.037766
GO:0090304 nucleic acid metabolic process 11.11% (8/72) 1.48 0.007997 0.037814
GO:0008150 biological_process 41.67% (30/72) 0.58 0.007905 0.037919
GO:0098798 mitochondrial protein-containing complex 2.78% (2/72) 3.94 0.00771 0.038669
GO:0018130 heterocycle biosynthetic process 5.56% (4/72) 2.34 0.008304 0.038712
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient 1.39% (1/72) 6.8 0.008947 0.039486
GO:0016554 cytidine to uridine editing 1.39% (1/72) 6.8 0.008947 0.039486
GO:0015990 electron transport coupled proton transport 1.39% (1/72) 6.8 0.008947 0.039486
GO:0042773 ATP synthesis coupled electron transport 1.39% (1/72) 6.82 0.008828 0.040585
GO:0043170 macromolecule metabolic process 20.83% (15/72) 0.94 0.009904 0.040979
GO:0080156 mitochondrial mRNA modification 1.39% (1/72) 6.72 0.009422 0.041035
GO:0005658 alpha DNA polymerase:primase complex 1.39% (1/72) 6.62 0.010134 0.041411
GO:1900864 mitochondrial RNA modification 1.39% (1/72) 6.65 0.009897 0.041465
GO:0006273 lagging strand elongation 1.39% (1/72) 6.69 0.009659 0.041522
GO:0019438 aromatic compound biosynthetic process 5.56% (4/72) 2.26 0.009853 0.041811
GO:0006807 nitrogen compound metabolic process 22.22% (16/72) 0.88 0.010888 0.043422
GO:0032501 multicellular organismal process 2.78% (2/72) 3.69 0.010765 0.043455
GO:0045240 dihydrolipoyl dehydrogenase complex 1.39% (1/72) 6.47 0.011201 0.044137
GO:0050136 NADH dehydrogenase (quinone) activity 1.39% (1/72) 6.41 0.011675 0.044934
GO:0008137 NADH dehydrogenase (ubiquinone) activity 1.39% (1/72) 6.41 0.011675 0.044934
GO:1901566 organonitrogen compound biosynthetic process 5.56% (4/72) 2.16 0.012541 0.047714
GO:0009522 photosystem I 1.39% (1/72) 6.11 0.014395 0.049633
GO:0006272 leading strand elongation 1.39% (1/72) 6.11 0.014395 0.049633
GO:0015035 protein-disulfide reductase activity 1.39% (1/72) 6.14 0.014041 0.049973
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (72) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms