Coexpression cluster: Cluster_2110 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051253 negative regulation of RNA metabolic process 33.33% (1/3) 8.08 0.003685 0.012206
GO:0019222 regulation of metabolic process 66.67% (2/3) 4.24 0.003654 0.012912
GO:0031323 regulation of cellular metabolic process 66.67% (2/3) 4.28 0.003433 0.012996
GO:0060255 regulation of macromolecule metabolic process 66.67% (2/3) 4.29 0.003392 0.013829
GO:0045892 negative regulation of DNA-templated transcription 33.33% (1/3) 8.29 0.003192 0.014096
GO:1902679 negative regulation of RNA biosynthetic process 33.33% (1/3) 8.29 0.003192 0.014096
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 33.33% (1/3) 7.67 0.004899 0.015274
GO:0009889 regulation of biosynthetic process 66.67% (2/3) 4.4 0.002939 0.015577
GO:0031326 regulation of cellular biosynthetic process 66.67% (2/3) 4.4 0.002935 0.017282
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 33.33% (1/3) 6.94 0.00815 0.017998
GO:0050789 regulation of biological process 66.67% (2/3) 3.65 0.008115 0.0187
GO:0010556 regulation of macromolecule biosynthetic process 66.67% (2/3) 4.42 0.002834 0.018772
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 33.33% (1/3) 7.25 0.006536 0.019244
GO:0051172 negative regulation of nitrogen compound metabolic process 33.33% (1/3) 6.96 0.008026 0.019335
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 33.33% (1/3) 7.02 0.007668 0.019354
GO:0000987 cis-regulatory region sequence-specific DNA binding 33.33% (1/3) 7.16 0.006958 0.019409
GO:0050794 regulation of cellular process 66.67% (2/3) 3.73 0.007367 0.019522
GO:0065007 biological regulation 66.67% (2/3) 3.55 0.009328 0.019774
GO:0010468 regulation of gene expression 66.67% (2/3) 4.43 0.002796 0.021168
GO:0080090 regulation of primary metabolic process 66.67% (2/3) 4.51 0.002509 0.022166
GO:0019219 regulation of nucleobase-containing compound metabolic process 66.67% (2/3) 4.71 0.001924 0.02549
GO:0051171 regulation of nitrogen compound metabolic process 66.67% (2/3) 4.53 0.002463 0.026106
GO:0001067 transcription regulatory region nucleic acid binding 33.33% (1/3) 6.19 0.013636 0.026768
GO:0000976 transcription cis-regulatory region binding 33.33% (1/3) 6.19 0.013636 0.026768
GO:1990837 sequence-specific double-stranded DNA binding 33.33% (1/3) 6.08 0.014694 0.027815
GO:0009890 negative regulation of biosynthetic process 33.33% (1/3) 5.93 0.01631 0.027885
GO:0009892 negative regulation of metabolic process 33.33% (1/3) 5.77 0.01817 0.028325
GO:0031327 negative regulation of cellular biosynthetic process 33.33% (1/3) 5.94 0.016241 0.028692
GO:0010558 negative regulation of macromolecule biosynthetic process 33.33% (1/3) 5.98 0.015787 0.028851
GO:0031324 negative regulation of cellular metabolic process 33.33% (1/3) 5.78 0.018072 0.029025
GO:0010605 negative regulation of macromolecule metabolic process 33.33% (1/3) 5.8 0.017786 0.029458
GO:0051252 regulation of RNA metabolic process 66.67% (2/3) 4.76 0.001779 0.031427
GO:0003690 double-stranded DNA binding 33.33% (1/3) 5.5 0.021879 0.033132
GO:0048519 negative regulation of biological process 33.33% (1/3) 5.38 0.023895 0.034228
GO:0048523 negative regulation of cellular process 33.33% (1/3) 5.4 0.023477 0.034564
GO:0043565 sequence-specific DNA binding 33.33% (1/3) 5.05 0.029983 0.041819
GO:2001141 regulation of RNA biosynthetic process 66.67% (2/3) 4.84 0.001611 0.042687
GO:0006355 regulation of DNA-templated transcription 66.67% (2/3) 4.84 0.001611 0.042687
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (3) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms