Coexpression cluster: Cluster_784 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005854 nascent polypeptide-associated complex 7.79% (6/77) 10.87 0.0 0.0
GO:0032991 protein-containing complex 29.87% (23/77) 2.69 0.0 0.0
GO:0005840 ribosome 10.39% (8/77) 5.39 0.0 0.0
GO:0022607 cellular component assembly 12.99% (10/77) 4.01 0.0 0.0
GO:0051082 unfolded protein binding 7.79% (6/77) 5.71 0.0 0.0
GO:0005575 cellular_component 50.65% (39/77) 1.34 0.0 0.0
GO:0003735 structural constituent of ribosome 9.09% (7/77) 4.97 0.0 0.0
GO:0006612 protein targeting to membrane 6.49% (5/77) 6.36 0.0 0.0
GO:0006412 translation 9.09% (7/77) 4.79 0.0 0.0
GO:0065003 protein-containing complex assembly 10.39% (8/77) 4.26 0.0 0.0
GO:0043043 peptide biosynthetic process 9.09% (7/77) 4.67 0.0 1e-06
GO:1990904 ribonucleoprotein complex 11.69% (9/77) 3.77 0.0 1e-06
GO:0044391 ribosomal subunit 7.79% (6/77) 5.15 0.0 1e-06
GO:0022625 cytosolic large ribosomal subunit 6.49% (5/77) 5.91 0.0 1e-06
GO:0005515 protein binding 28.57% (22/77) 1.93 0.0 1e-06
GO:0043933 protein-containing complex organization 11.69% (9/77) 3.7 0.0 1e-06
GO:0090150 establishment of protein localization to membrane 6.49% (5/77) 5.76 0.0 1e-06
GO:0009059 macromolecule biosynthetic process 12.99% (10/77) 3.36 0.0 1e-06
GO:0006518 peptide metabolic process 9.09% (7/77) 4.41 0.0 1e-06
GO:0009987 cellular process 45.45% (35/77) 1.3 0.0 1e-06
GO:0015934 large ribosomal subunit 6.49% (5/77) 5.62 0.0 1e-06
GO:0043604 amide biosynthetic process 9.09% (7/77) 4.27 0.0 2e-06
GO:0005198 structural molecule activity 9.09% (7/77) 4.25 0.0 2e-06
GO:0043226 organelle 28.57% (22/77) 1.81 0.0 2e-06
GO:0043229 intracellular organelle 28.57% (22/77) 1.81 0.0 2e-06
GO:0072657 protein localization to membrane 6.49% (5/77) 5.36 0.0 3e-06
GO:0110165 cellular anatomical entity 42.86% (33/77) 1.28 0.0 4e-06
GO:0006605 protein targeting 6.49% (5/77) 5.22 0.0 4e-06
GO:0043603 amide metabolic process 9.09% (7/77) 3.85 1e-06 9e-06
GO:0051668 localization within membrane 6.49% (5/77) 4.92 1e-06 1.1e-05
GO:0018283 iron incorporation into metallo-sulfur cluster 2.6% (2/77) 9.84 2e-06 2.5e-05
GO:0004322 ferroxidase activity 2.6% (2/77) 9.84 2e-06 2.5e-05
GO:0016724 oxidoreductase activity, acting on metal ions, oxygen as acceptor 2.6% (2/77) 9.84 2e-06 2.5e-05
GO:0018282 metal incorporation into metallo-sulfur cluster 2.6% (2/77) 9.84 2e-06 2.5e-05
GO:0034986 iron chaperone activity 2.6% (2/77) 9.84 2e-06 2.5e-05
GO:0044271 cellular nitrogen compound biosynthetic process 11.69% (9/77) 2.94 3e-06 3.1e-05
GO:0016043 cellular component organization 14.29% (11/77) 2.43 6e-06 6e-05
GO:0043228 non-membrane-bounded organelle 10.39% (8/77) 3.06 6e-06 6e-05
GO:1901566 organonitrogen compound biosynthetic process 10.39% (8/77) 3.06 6e-06 6.1e-05
GO:0043232 intracellular non-membrane-bounded organelle 10.39% (8/77) 3.06 6e-06 6.2e-05
GO:0008150 biological_process 51.95% (40/77) 0.9 7e-06 6.5e-05
GO:0016722 oxidoreductase activity, acting on metal ions 2.6% (2/77) 9.07 7e-06 6.5e-05
GO:1901576 organic substance biosynthetic process 15.58% (12/77) 2.25 8e-06 7.1e-05
GO:0005488 binding 45.45% (35/77) 1.01 8e-06 7.2e-05
GO:0009058 biosynthetic process 15.58% (12/77) 2.17 1.3e-05 0.000117
GO:0071840 cellular component organization or biogenesis 14.29% (11/77) 2.28 1.6e-05 0.000143
GO:0044249 cellular biosynthetic process 14.29% (11/77) 2.25 2e-05 0.00017
GO:0016530 metallochaperone activity 2.6% (2/77) 8.02 2.9e-05 0.000241
GO:0003674 molecular_function 58.44% (45/77) 0.72 3e-05 0.000251
GO:0051234 establishment of localization 15.58% (12/77) 2.01 4.1e-05 0.00033
GO:0071013 catalytic step 2 spliceosome 3.9% (3/77) 5.47 4.7e-05 0.000373
GO:0003723 RNA binding 11.69% (9/77) 2.41 5.1e-05 0.000397
GO:0051179 localization 15.58% (12/77) 1.95 5.8e-05 0.000443
GO:0051641 cellular localization 9.09% (7/77) 2.78 7.6e-05 0.000574
GO:0008199 ferric iron binding 2.6% (2/77) 7.2 8.9e-05 0.000658
GO:0140513 nuclear protein-containing complex 9.09% (7/77) 2.61 0.000158 0.001144
GO:0005905 clathrin-coated pit 2.6% (2/77) 6.72 0.000174 0.001216
GO:0017022 myosin binding 2.6% (2/77) 6.73 0.000172 0.001221
GO:0005737 cytoplasm 12.99% (10/77) 2.01 0.000184 0.001261
GO:0006879 intracellular iron ion homeostasis 2.6% (2/77) 6.63 0.000198 0.001339
GO:0030136 clathrin-coated vesicle 2.6% (2/77) 6.56 0.000219 0.001343
GO:0032050 clathrin heavy chain binding 2.6% (2/77) 6.56 0.000216 0.001348
GO:0005686 U2 snRNP 2.6% (2/77) 6.57 0.000214 0.001352
GO:0034641 cellular nitrogen compound metabolic process 16.88% (13/77) 1.66 0.000212 0.001362
GO:0005545 1-phosphatidylinositol binding 2.6% (2/77) 6.59 0.000209 0.001362
GO:0048268 clathrin coat assembly 2.6% (2/77) 6.59 0.000209 0.001362
GO:0008198 ferrous iron binding 2.6% (2/77) 6.38 0.00028 0.001695
GO:0098590 plasma membrane region 2.6% (2/77) 6.25 0.000333 0.001984
GO:0044237 cellular metabolic process 25.97% (20/77) 1.15 0.000447 0.002584
GO:0006334 nucleosome assembly 2.6% (2/77) 6.05 0.000441 0.002587
GO:0045184 establishment of protein localization 6.49% (5/77) 2.96 0.000491 0.002799
GO:0072583 clathrin-dependent endocytosis 2.6% (2/77) 5.91 0.000534 0.003004
GO:0015693 magnesium ion transport 2.6% (2/77) 5.84 0.000588 0.003177
GO:0015095 magnesium ion transmembrane transporter activity 2.6% (2/77) 5.84 0.000588 0.003177
GO:0051537 2 iron, 2 sulfur cluster binding 2.6% (2/77) 5.85 0.00058 0.003216
GO:0006807 nitrogen compound metabolic process 25.97% (20/77) 1.11 0.000647 0.003401
GO:0004636 phosphoribosyl-ATP diphosphatase activity 1.3% (1/77) 10.61 0.000641 0.003413
GO:0006900 vesicle budding from membrane 2.6% (2/77) 5.71 0.0007 0.003633
GO:0016226 iron-sulfur cluster assembly 2.6% (2/77) 5.69 0.000723 0.003661
GO:0031163 metallo-sulfur cluster assembly 2.6% (2/77) 5.69 0.000723 0.003661
GO:0034728 nucleosome organization 2.6% (2/77) 5.67 0.000737 0.003687
GO:0030135 coated vesicle 2.6% (2/77) 5.59 0.000821 0.00391
GO:0033036 macromolecule localization 6.49% (5/77) 2.79 0.000813 0.003921
GO:0070727 cellular macromolecule localization 6.49% (5/77) 2.8 0.000806 0.003934
GO:0008104 protein localization 6.49% (5/77) 2.8 0.000798 0.003941
GO:0043231 intracellular membrane-bounded organelle 18.18% (14/77) 1.37 0.000864 0.00407
GO:1901681 sulfur compound binding 2.6% (2/77) 5.54 0.000882 0.004105
GO:0006898 receptor-mediated endocytosis 2.6% (2/77) 5.51 0.000919 0.004228
GO:0043227 membrane-bounded organelle 18.18% (14/77) 1.36 0.00093 0.00423
GO:0030276 clathrin binding 2.6% (2/77) 5.47 0.000978 0.0044
GO:0005681 spliceosomal complex 3.9% (3/77) 3.96 0.001001 0.004453
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 1.3% (1/77) 9.76 0.001153 0.005074
GO:0043170 macromolecule metabolic process 23.38% (18/77) 1.1 0.001326 0.005774
GO:0006338 chromatin remodeling 3.9% (3/77) 3.77 0.001448 0.006237
GO:0009931 calcium-dependent protein serine/threonine kinase activity 2.6% (2/77) 5.13 0.001557 0.006568
GO:0010857 calcium-dependent protein kinase activity 2.6% (2/77) 5.13 0.001557 0.006568
GO:0004683 calmodulin-dependent protein kinase activity 2.6% (2/77) 5.11 0.001584 0.006615
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 1.3% (1/77) 9.12 0.001792 0.007407
GO:0006325 chromatin organization 3.9% (3/77) 3.65 0.001848 0.00756
GO:0005684 U2-type spliceosomal complex 2.6% (2/77) 4.96 0.001947 0.007887
GO:0042788 polysomal ribosome 1.3% (1/77) 8.93 0.002048 0.008213
GO:0030532 small nuclear ribonucleoprotein complex 2.6% (2/77) 4.8 0.002439 0.009406
GO:0034719 SMN-Sm protein complex 1.3% (1/77) 8.68 0.002432 0.00947
GO:0006165 obsolete nucleoside diphosphate phosphorylation 1.3% (1/77) 8.68 0.002432 0.00947
GO:0097525 spliceosomal snRNP complex 2.6% (2/77) 4.8 0.00243 0.009649
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding 2.6% (2/77) 4.68 0.002835 0.01083
GO:0120114 Sm-like protein family complex 2.6% (2/77) 4.66 0.002926 0.011076
GO:0140104 molecular carrier activity 2.6% (2/77) 4.63 0.003038 0.011394
GO:0046777 protein autophosphorylation 2.6% (2/77) 4.62 0.003076 0.01143
GO:1902936 phosphatidylinositol bisphosphate binding 2.6% (2/77) 4.57 0.003317 0.012214
GO:0071824 protein-DNA complex organization 3.9% (3/77) 3.32 0.003485 0.012714
GO:0065004 protein-DNA complex assembly 2.6% (2/77) 4.48 0.003752 0.013567
GO:1901981 phosphatidylinositol phosphate binding 2.6% (2/77) 4.45 0.003867 0.01386
GO:0019538 protein metabolic process 15.58% (12/77) 1.26 0.003932 0.01397
GO:0006897 endocytosis 2.6% (2/77) 4.43 0.003995 0.014069
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.6% (2/77) 4.42 0.004059 0.014173
GO:1901564 organonitrogen compound metabolic process 18.18% (14/77) 1.13 0.004115 0.014243
GO:0010270 photosystem II oxygen evolving complex assembly 1.3% (1/77) 7.84 0.004347 0.014922
GO:0000149 SNARE binding 2.6% (2/77) 4.35 0.004445 0.015129
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.6% (2/77) 4.34 0.004524 0.01527
GO:0071704 organic substance metabolic process 27.27% (21/77) 0.84 0.004894 0.016115
GO:0051540 metal cluster binding 2.6% (2/77) 4.28 0.004883 0.01621
GO:0051536 iron-sulfur cluster binding 2.6% (2/77) 4.28 0.004883 0.01621
GO:0016050 vesicle organization 2.6% (2/77) 4.26 0.004989 0.016296
GO:0044238 primary metabolic process 25.97% (20/77) 0.85 0.005403 0.017231
GO:0000428 DNA-directed RNA polymerase complex 2.6% (2/77) 4.21 0.005401 0.01736
GO:0098771 inorganic ion homeostasis 2.6% (2/77) 4.21 0.005364 0.017379
GO:0005516 calmodulin binding 2.6% (2/77) 4.17 0.005701 0.018037
GO:0016272 prefoldin complex 1.3% (1/77) 7.44 0.00575 0.018052
GO:0000785 chromatin 2.6% (2/77) 4.13 0.005969 0.018596
GO:0042393 histone binding 2.6% (2/77) 4.12 0.006086 0.018815
GO:0034715 pICln-Sm protein complex 1.3% (1/77) 7.23 0.006642 0.020224
GO:0098657 import into cell 2.6% (2/77) 4.05 0.006631 0.020344
GO:0035091 phosphatidylinositol binding 2.6% (2/77) 4.02 0.006877 0.020784
GO:0034062 5'-3' RNA polymerase activity 2.6% (2/77) 4.01 0.006987 0.020808
GO:0097747 RNA polymerase activity 2.6% (2/77) 4.01 0.006987 0.020808
GO:0018105 peptidyl-serine phosphorylation 2.6% (2/77) 3.99 0.007211 0.021163
GO:0018209 peptidyl-serine modification 2.6% (2/77) 3.99 0.007211 0.021163
GO:0005634 nucleus 10.39% (8/77) 1.49 0.00761 0.022173
GO:0030880 RNA polymerase complex 2.6% (2/77) 3.94 0.007712 0.022309
GO:0004017 adenylate kinase activity 1.3% (1/77) 7.0 0.007787 0.022366
GO:0000949 aromatic amino acid family catabolic process to alcohol via Ehrlich pathway 1.3% (1/77) 6.86 0.008549 0.023716
GO:0000947 amino acid catabolic process to alcohol via Ehrlich pathway 1.3% (1/77) 6.86 0.008549 0.023716
GO:0004737 pyruvate decarboxylase activity 1.3% (1/77) 6.86 0.008549 0.023716
GO:0000955 amino acid catabolic process via Ehrlich pathway 1.3% (1/77) 6.86 0.008549 0.023716
GO:0005687 U4 snRNP 1.3% (1/77) 6.84 0.008676 0.023904
GO:1902494 catalytic complex 6.49% (5/77) 1.99 0.008828 0.024158
GO:0008152 metabolic process 27.27% (21/77) 0.77 0.008521 0.024302
GO:0006812 monoatomic cation transport 3.9% (3/77) 2.82 0.009044 0.024582
GO:0051131 chaperone-mediated protein complex assembly 1.3% (1/77) 6.74 0.009311 0.024974
GO:0036402 proteasome-activating activity 1.3% (1/77) 6.74 0.009311 0.024974
GO:0010207 photosystem II assembly 1.3% (1/77) 6.72 0.009438 0.025148
GO:0030003 intracellular monoatomic cation homeostasis 2.6% (2/77) 3.76 0.009817 0.025986
GO:0022618 protein-RNA complex assembly 2.6% (2/77) 3.74 0.010077 0.026502
GO:0004127 cytidylate kinase activity 1.3% (1/77) 6.61 0.0102 0.026651
GO:0004550 nucleoside diphosphate kinase activity 1.3% (1/77) 6.59 0.010327 0.026809
GO:0071826 protein-RNA complex organization 2.6% (2/77) 3.69 0.010675 0.027538
GO:0019238 cyclohydrolase activity 1.3% (1/77) 6.45 0.011341 0.028887
GO:0006873 intracellular monoatomic ion homeostasis 2.6% (2/77) 3.65 0.011271 0.028891
GO:0005682 U5 snRNP 1.3% (1/77) 6.32 0.012481 0.031591
GO:0000105 histidine biosynthetic process 1.3% (1/77) 6.23 0.01324 0.032695
GO:0006547 histidine metabolic process 1.3% (1/77) 6.23 0.01324 0.032695
GO:0006811 monoatomic ion transport 3.9% (3/77) 2.62 0.013022 0.032758
GO:0008324 monoatomic cation transmembrane transporter activity 3.9% (3/77) 2.62 0.013178 0.032944
GO:0055080 monoatomic cation homeostasis 2.6% (2/77) 3.51 0.013628 0.03345
GO:0005543 phospholipid binding 2.6% (2/77) 3.49 0.013986 0.034122
GO:0000974 Prp19 complex 1.3% (1/77) 6.12 0.014251 0.034355
GO:0055082 intracellular chemical homeostasis 2.6% (2/77) 3.48 0.014195 0.034425
GO:0032993 protein-DNA complex 2.6% (2/77) 3.46 0.01454 0.034845
GO:0071014 post-mRNA release spliceosomal complex 1.3% (1/77) 6.05 0.015008 0.035756
GO:0000243 commitment complex 1.3% (1/77) 5.95 0.016018 0.037937
GO:0050801 monoatomic ion homeostasis 2.6% (2/77) 3.38 0.016178 0.038094
GO:0035145 exon-exon junction complex 1.3% (1/77) 5.9 0.016648 0.038751
GO:0008540 proteasome regulatory particle, base subcomplex 1.3% (1/77) 5.9 0.016648 0.038751
GO:0005689 U12-type spliceosomal complex 1.3% (1/77) 5.87 0.0169 0.039112
GO:0008380 RNA splicing 2.6% (2/77) 3.3 0.017955 0.041317
GO:0019725 cellular homeostasis 2.6% (2/77) 3.27 0.018465 0.04225
GO:0045292 mRNA cis splicing, via spliceosome 1.3% (1/77) 5.67 0.019417 0.04418
GO:0001054 RNA polymerase I activity 1.3% (1/77) 5.64 0.019794 0.044786
GO:0000028 ribosomal small subunit assembly 1.3% (1/77) 5.57 0.020799 0.046283
GO:0061024 membrane organization 2.6% (2/77) 3.18 0.020744 0.046417
GO:0005736 RNA polymerase I complex 1.3% (1/77) 5.58 0.020673 0.046515
GO:0050145 nucleoside monophosphate kinase activity 1.3% (1/77) 5.52 0.021552 0.047696
GO:0015075 monoatomic ion transmembrane transporter activity 3.9% (3/77) 2.34 0.021966 0.048088
GO:0001056 RNA polymerase III activity 1.3% (1/77) 5.5 0.021928 0.048265
GO:0000387 spliceosomal snRNP assembly 1.3% (1/77) 5.45 0.02268 0.049383
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (77) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms