Coexpression cluster: Cluster_150 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0046863 ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity 9.78% (9/92) 10.29 0.0 0.0
GO:0010242 oxygen evolving activity 7.61% (7/92) 10.9 0.0 0.0
GO:0042549 photosystem II stabilization 7.61% (7/92) 10.44 0.0 0.0
GO:0009579 thylakoid 10.87% (10/92) 7.44 0.0 0.0
GO:0098796 membrane protein complex 18.48% (17/92) 4.72 0.0 0.0
GO:0043467 regulation of generation of precursor metabolites and energy 7.61% (7/92) 9.44 0.0 0.0
GO:0042548 regulation of photosynthesis, light reaction 7.61% (7/92) 9.44 0.0 0.0
GO:0010207 photosystem II assembly 7.61% (7/92) 9.27 0.0 0.0
GO:0010109 regulation of photosynthesis 7.61% (7/92) 9.16 0.0 0.0
GO:0016491 oxidoreductase activity 26.09% (24/92) 3.22 0.0 0.0
GO:0055035 plastid thylakoid membrane 10.87% (10/92) 6.13 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 10.87% (10/92) 6.13 0.0 0.0
GO:0042651 thylakoid membrane 10.87% (10/92) 6.01 0.0 0.0
GO:0034357 photosynthetic membrane 10.87% (10/92) 6.01 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 7.61% (7/92) 8.07 0.0 0.0
GO:0042170 plastid membrane 10.87% (10/92) 5.52 0.0 0.0
GO:0031968 organelle outer membrane 10.87% (10/92) 5.4 0.0 0.0
GO:0019867 outer membrane 10.87% (10/92) 5.33 0.0 0.0
GO:0009532 plastid stroma 9.78% (9/92) 5.71 0.0 0.0
GO:0009570 chloroplast stroma 9.78% (9/92) 5.71 0.0 0.0
GO:0005575 cellular_component 53.26% (49/92) 1.41 0.0 0.0
GO:0008047 enzyme activator activity 9.78% (9/92) 5.29 0.0 0.0
GO:0016630 protochlorophyllide reductase activity 4.35% (4/92) 10.15 0.0 0.0
GO:0140677 molecular function activator activity 9.78% (9/92) 5.2 0.0 0.0
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 5.43% (5/92) 8.34 0.0 0.0
GO:0009522 photosystem I 5.43% (5/92) 8.08 0.0 0.0
GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity 5.43% (5/92) 8.05 0.0 0.0
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity 5.43% (5/92) 8.05 0.0 0.0
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 5.43% (5/92) 7.9 0.0 0.0
GO:0015252 proton channel activity 5.43% (5/92) 7.9 0.0 0.0
GO:1990204 oxidoreductase complex 7.61% (7/92) 5.83 0.0 0.0
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain 5.43% (5/92) 7.66 0.0 0.0
GO:0015986 proton motive force-driven ATP synthesis 5.43% (5/92) 7.6 0.0 0.0
GO:0006754 ATP biosynthetic process 5.43% (5/92) 7.6 0.0 0.0
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 5.43% (5/92) 7.15 0.0 0.0
GO:0009145 purine nucleoside triphosphate biosynthetic process 5.43% (5/92) 7.15 0.0 0.0
GO:0098588 bounding membrane of organelle 10.87% (10/92) 4.0 0.0 0.0
GO:0003824 catalytic activity 45.65% (42/92) 1.33 0.0 0.0
GO:0006006 glucose metabolic process 6.52% (6/92) 5.87 0.0 0.0
GO:0009521 photosystem 5.43% (5/92) 6.55 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 8.7% (8/92) 4.51 0.0 0.0
GO:0030234 enzyme regulator activity 9.78% (9/92) 4.05 0.0 0.0
GO:0009507 chloroplast 9.78% (9/92) 4.01 0.0 0.0
GO:0009201 ribonucleoside triphosphate biosynthetic process 5.43% (5/92) 6.28 0.0 0.0
GO:0009536 plastid 9.78% (9/92) 3.97 0.0 0.0
GO:0009142 nucleoside triphosphate biosynthetic process 5.43% (5/92) 6.26 0.0 0.0
GO:0098772 molecular function regulator activity 9.78% (9/92) 3.95 0.0 0.0
GO:0015979 photosynthesis 5.43% (5/92) 6.16 0.0 0.0
GO:0019318 hexose metabolic process 6.52% (6/92) 5.24 0.0 0.0
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 3.26% (3/92) 9.21 0.0 0.0
GO:0043228 non-membrane-bounded organelle 11.96% (11/92) 3.26 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 11.96% (11/92) 3.26 0.0 0.0
GO:0110165 cellular anatomical entity 42.39% (39/92) 1.26 0.0 0.0
GO:0031090 organelle membrane 10.87% (10/92) 3.42 0.0 0.0
GO:0005261 monoatomic cation channel activity 5.43% (5/92) 5.8 0.0 0.0
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 5.43% (5/92) 5.71 0.0 0.0
GO:0005996 monosaccharide metabolic process 6.52% (6/92) 4.9 0.0 0.0
GO:0009768 photosynthesis, light harvesting in photosystem I 4.35% (4/92) 6.75 0.0 0.0
GO:0009765 photosynthesis, light harvesting 4.35% (4/92) 6.75 0.0 0.0
GO:0009538 photosystem I reaction center 3.26% (3/92) 8.38 0.0 1e-06
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 5.43% (5/92) 5.46 0.0 1e-06
GO:0043226 organelle 26.09% (24/92) 1.68 0.0 1e-06
GO:0051287 NAD binding 5.43% (5/92) 5.28 0.0 1e-06
GO:0043229 intracellular organelle 26.09% (24/92) 1.68 0.0 1e-06
GO:0009152 purine ribonucleotide biosynthetic process 5.43% (5/92) 5.19 0.0 2e-06
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 4.35% (4/92) 5.91 1e-06 4e-06
GO:0065003 protein-containing complex assembly 7.61% (7/92) 3.81 1e-06 4e-06
GO:0046034 ATP metabolic process 5.43% (5/92) 4.9 1e-06 4e-06
GO:0032991 protein-containing complex 18.48% (17/92) 2.0 1e-06 5e-06
GO:0009205 purine ribonucleoside triphosphate metabolic process 5.43% (5/92) 4.82 1e-06 5e-06
GO:0006164 purine nucleotide biosynthetic process 5.43% (5/92) 4.82 1e-06 5e-06
GO:0009144 purine nucleoside triphosphate metabolic process 5.43% (5/92) 4.8 1e-06 6e-06
GO:0009260 ribonucleotide biosynthetic process 5.43% (5/92) 4.72 2e-06 7e-06
GO:0015078 proton transmembrane transporter activity 5.43% (5/92) 4.71 2e-06 7e-06
GO:0072522 purine-containing compound biosynthetic process 5.43% (5/92) 4.71 2e-06 7e-06
GO:0046390 ribose phosphate biosynthetic process 5.43% (5/92) 4.67 2e-06 8e-06
GO:0010287 plastoglobule 3.26% (3/92) 7.02 2e-06 8e-06
GO:0044281 small molecule metabolic process 13.04% (12/92) 2.46 2e-06 9e-06
GO:0009199 ribonucleoside triphosphate metabolic process 5.43% (5/92) 4.6 2e-06 1e-05
GO:0005216 monoatomic ion channel activity 5.43% (5/92) 4.57 3e-06 1.1e-05
GO:0009141 nucleoside triphosphate metabolic process 5.43% (5/92) 4.56 3e-06 1.1e-05
GO:0030093 chloroplast photosystem I 2.17% (2/92) 9.59 3e-06 1.3e-05
GO:1901293 nucleoside phosphate biosynthetic process 5.43% (5/92) 4.27 7e-06 2.9e-05
GO:0009165 nucleotide biosynthetic process 5.43% (5/92) 4.27 7e-06 2.9e-05
GO:0022803 passive transmembrane transporter activity 5.43% (5/92) 4.19 9e-06 3.6e-05
GO:0015267 channel activity 5.43% (5/92) 4.19 9e-06 3.6e-05
GO:0000302 response to reactive oxygen species 3.26% (3/92) 6.25 9e-06 3.7e-05
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 4.35% (4/92) 4.96 1e-05 3.7e-05
GO:0022607 cellular component assembly 7.61% (7/92) 3.24 1e-05 4e-05
GO:0009416 response to light stimulus 4.35% (4/92) 4.88 1.2e-05 4.4e-05
GO:0009314 response to radiation 4.35% (4/92) 4.77 1.6e-05 5.9e-05
GO:0043933 protein-containing complex organization 7.61% (7/92) 3.08 2.2e-05 7.9e-05
GO:0010230 alternative respiration 2.17% (2/92) 8.12 2.5e-05 8.9e-05
GO:0098807 chloroplast thylakoid membrane protein complex 2.17% (2/92) 8.12 2.5e-05 8.9e-05
GO:0008152 metabolic process 33.7% (31/92) 1.07 2.5e-05 9e-05
GO:0009916 alternative oxidase activity 2.17% (2/92) 8.06 2.7e-05 9.5e-05
GO:0009150 purine ribonucleotide metabolic process 5.43% (5/92) 3.85 2.9e-05 9.9e-05
GO:0009772 photosynthetic electron transport in photosystem II 2.17% (2/92) 7.95 3.2e-05 0.000109
GO:0009259 ribonucleotide metabolic process 5.43% (5/92) 3.64 5.6e-05 0.000189
GO:0009773 photosynthetic electron transport in photosystem I 2.17% (2/92) 7.43 6.6e-05 0.000221
GO:0019693 ribose phosphate metabolic process 5.43% (5/92) 3.59 6.7e-05 0.000224
GO:1901137 carbohydrate derivative biosynthetic process 5.43% (5/92) 3.57 7e-05 0.000233
GO:0016887 ATP hydrolysis activity 6.52% (6/92) 3.1 7.8e-05 0.000256
GO:0006163 purine nucleotide metabolic process 5.43% (5/92) 3.47 9.8e-05 0.000316
GO:0072521 purine-containing compound metabolic process 5.43% (5/92) 3.38 0.00013 0.000418
GO:1901135 carbohydrate derivative metabolic process 6.52% (6/92) 2.9 0.000169 0.000536
GO:0098800 inner mitochondrial membrane protein complex 3.26% (3/92) 4.82 0.000178 0.000559
GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor 2.17% (2/92) 6.63 0.000198 0.000617
GO:0009628 response to abiotic stimulus 4.35% (4/92) 3.82 0.0002 0.00062
GO:0022890 inorganic cation transmembrane transporter activity 5.43% (5/92) 3.24 0.000203 0.000621
GO:0009117 nucleotide metabolic process 5.43% (5/92) 3.22 0.000218 0.000661
GO:0006753 nucleoside phosphate metabolic process 5.43% (5/92) 3.2 0.000228 0.000686
GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors 2.17% (2/92) 6.43 0.000259 0.000771
GO:0090407 organophosphate biosynthetic process 5.43% (5/92) 3.16 0.000265 0.000784
GO:0043446 cellular alkane metabolic process 1.09% (1/92) 11.67 0.000306 0.000889
GO:0043448 alkane catabolic process 1.09% (1/92) 11.67 0.000306 0.000889
GO:0008324 monoatomic cation transmembrane transporter activity 5.43% (5/92) 3.1 0.000319 0.00092
GO:0003674 molecular_function 53.26% (49/92) 0.59 0.000332 0.000947
GO:0016874 ligase activity 5.43% (5/92) 3.05 0.00037 0.001049
GO:0009767 photosynthetic electron transport chain 2.17% (2/92) 6.1 0.000413 0.001159
GO:0055086 nucleobase-containing small molecule metabolic process 5.43% (5/92) 2.99 0.000444 0.001228
GO:1901700 response to oxygen-containing compound 3.26% (3/92) 4.37 0.000441 0.001229
GO:0005975 carbohydrate metabolic process 7.61% (7/92) 2.35 0.000482 0.00132
GO:0015318 inorganic molecular entity transmembrane transporter activity 5.43% (5/92) 2.94 0.000528 0.001435
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.52% (6/92) 2.56 0.000571 0.00154
GO:0098798 mitochondrial protein-containing complex 3.26% (3/92) 4.17 0.000661 0.001768
GO:0019637 organophosphate metabolic process 6.52% (6/92) 2.52 0.000667 0.00177
GO:0015075 monoatomic ion transmembrane transporter activity 5.43% (5/92) 2.82 0.000768 0.002021
GO:0009987 cellular process 32.61% (30/92) 0.82 0.000794 0.002075
GO:0044237 cellular metabolic process 23.91% (22/92) 1.03 0.000814 0.002093
GO:0016462 pyrophosphatase activity 6.52% (6/92) 2.47 0.00081 0.002099
GO:1902494 catalytic complex 7.61% (7/92) 2.21 0.000828 0.002113
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.52% (6/92) 2.44 0.000884 0.00224
GO:0016817 hydrolase activity, acting on acid anhydrides 6.52% (6/92) 2.43 0.000928 0.002317
GO:0008150 biological_process 43.48% (40/92) 0.64 0.000921 0.002317
GO:1901566 organonitrogen compound biosynthetic process 6.52% (6/92) 2.39 0.001052 0.002607
GO:0034654 nucleobase-containing compound biosynthetic process 5.43% (5/92) 2.67 0.00122 0.003001
GO:0009060 aerobic respiration 2.17% (2/92) 5.19 0.001422 0.003473
GO:0045333 cellular respiration 2.17% (2/92) 5.15 0.001509 0.00366
GO:0008974 phosphoribulokinase activity 1.09% (1/92) 9.35 0.00153 0.003683
GO:0006979 response to oxidative stress 3.26% (3/92) 3.69 0.001696 0.004053
GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity 1.09% (1/92) 8.87 0.002141 0.005082
GO:0044271 cellular nitrogen compound biosynthetic process 6.52% (6/92) 2.1 0.002891 0.006813
GO:0015980 energy derivation by oxidation of organic compounds 2.17% (2/92) 4.58 0.003279 0.007674
GO:0018130 heterocycle biosynthetic process 5.43% (5/92) 2.31 0.003578 0.008259
GO:0050661 NADP binding 2.17% (2/92) 4.51 0.003577 0.008314
GO:0019438 aromatic compound biosynthetic process 5.43% (5/92) 2.23 0.00442 0.010132
GO:0043231 intracellular membrane-bounded organelle 15.22% (14/92) 1.12 0.004843 0.011027
GO:0022900 electron transport chain 2.17% (2/92) 4.28 0.00489 0.01106
GO:0043227 membrane-bounded organelle 15.22% (14/92) 1.11 0.00517 0.011616
GO:0005506 iron ion binding 4.35% (4/92) 2.5 0.00566 0.012633
GO:1901362 organic cyclic compound biosynthetic process 5.43% (5/92) 2.08 0.006774 0.015018
GO:0030941 chloroplast targeting sequence binding 1.09% (1/92) 6.95 0.008082 0.017802
GO:0020037 heme binding 4.35% (4/92) 2.31 0.008876 0.019423
GO:0046906 tetrapyrrole binding 4.35% (4/92) 2.3 0.009084 0.019751
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity 1.09% (1/92) 6.65 0.009903 0.021393
GO:0035196 miRNA processing 1.09% (1/92) 6.63 0.010055 0.021583
GO:0008097 5S rRNA binding 1.09% (1/92) 6.56 0.010509 0.022416
GO:0042221 response to chemical 3.26% (3/92) 2.74 0.010643 0.022558
GO:0016043 cellular component organization 7.61% (7/92) 1.52 0.011238 0.02367
GO:0031323 regulation of cellular metabolic process 8.7% (8/92) 1.35 0.013723 0.028725
GO:0005986 sucrose biosynthetic process 1.09% (1/92) 6.13 0.014139 0.029413
GO:0009058 biosynthetic process 8.7% (8/92) 1.33 0.014373 0.029717
GO:0019222 regulation of metabolic process 8.7% (8/92) 1.3 0.016298 0.03349
GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity 1.09% (1/92) 5.83 0.017455 0.035223
GO:0070940 obsolete dephosphorylation of RNA polymerase II C-terminal domain 1.09% (1/92) 5.83 0.017455 0.035223
GO:0031359 obsolete integral component of chloroplast outer membrane 1.09% (1/92) 5.79 0.017906 0.035496
GO:0015035 protein-disulfide reductase activity 1.09% (1/92) 5.79 0.017906 0.035496
GO:0045036 protein targeting to chloroplast 1.09% (1/92) 5.8 0.017756 0.035617
GO:0030554 adenyl nucleotide binding 13.04% (12/92) 0.99 0.017444 0.035628
GO:0071840 cellular component organization or biogenesis 7.61% (7/92) 1.37 0.019294 0.037584
GO:1901363 heterocyclic compound binding 14.13% (13/92) 0.92 0.019215 0.037648
GO:0006000 fructose metabolic process 1.09% (1/92) 5.7 0.019109 0.037658
GO:0036094 small molecule binding 14.13% (13/92) 0.91 0.020188 0.039099
GO:0050308 sugar-phosphatase activity 1.09% (1/92) 5.61 0.02031 0.03911
GO:0030388 fructose 1,6-bisphosphate metabolic process 1.09% (1/92) 5.48 0.022108 0.042332
GO:0016020 membrane 11.96% (11/92) 0.99 0.02234 0.042535
GO:0120253 hydrocarbon catabolic process 1.09% (1/92) 5.35 0.024203 0.045822
GO:0017076 purine nucleotide binding 13.04% (12/92) 0.91 0.025525 0.048056
GO:0006002 fructose 6-phosphate metabolic process 1.09% (1/92) 5.23 0.026293 0.049226
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (92) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms