Coexpression cluster: Cluster_895 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010343 singlet oxygen-mediated programmed cell death 2.22% (3/135) 9.0 0.0 6e-06
GO:0000304 response to singlet oxygen 2.22% (3/135) 9.0 0.0 6e-06
GO:0097468 programmed cell death in response to reactive oxygen species 2.22% (3/135) 9.0 0.0 6e-06
GO:0003723 RNA binding 11.11% (15/135) 2.33 0.0 5.4e-05
GO:0003729 mRNA binding 5.93% (8/135) 3.4 1e-06 0.000119
GO:0140513 nuclear protein-containing complex 8.89% (12/135) 2.58 1e-06 0.000124
GO:0005575 cellular_component 37.04% (50/135) 0.89 3e-06 0.00023
GO:0034976 response to endoplasmic reticulum stress 3.7% (5/135) 4.53 3e-06 0.000235
GO:1990904 ribonucleoprotein complex 6.67% (9/135) 2.96 3e-06 0.000259
GO:0012501 programmed cell death 2.22% (3/135) 6.57 5e-06 0.000273
GO:0008219 cell death 2.22% (3/135) 6.57 5e-06 0.000273
GO:0008150 biological_process 45.93% (62/135) 0.72 6e-06 0.00028
GO:0016592 mediator complex 2.96% (4/135) 5.09 7e-06 0.000315
GO:0032991 protein-containing complex 14.07% (19/135) 1.6 1.6e-05 0.000703
GO:0005681 spliceosomal complex 3.7% (5/135) 3.89 2.6e-05 0.00105
GO:0000302 response to reactive oxygen species 2.22% (3/135) 5.7 3e-05 0.001126
GO:0006357 regulation of transcription by RNA polymerase II 5.19% (7/135) 2.97 3.7e-05 0.00132
GO:0009987 cellular process 32.59% (44/135) 0.82 5.7e-05 0.001928
GO:0065007 biological regulation 14.81% (20/135) 1.38 8.3e-05 0.002633
GO:0005488 binding 37.04% (50/135) 0.71 0.000101 0.003074
GO:0050794 regulation of cellular process 13.33% (18/135) 1.4 0.000161 0.004651
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 1.48% (2/135) 6.64 0.000194 0.005103
GO:0009863 salicylic acid mediated signaling pathway 1.48% (2/135) 6.64 0.000194 0.005103
GO:0005684 U2-type spliceosomal complex 2.22% (3/135) 4.74 0.000213 0.005159
GO:0003676 nucleic acid binding 15.56% (21/135) 1.24 0.000206 0.005192
GO:0000245 spliceosomal complex assembly 1.48% (2/135) 6.46 0.000249 0.005596
GO:0003674 molecular_function 50.37% (68/135) 0.51 0.000245 0.005712
GO:0070847 core mediator complex 1.48% (2/135) 6.42 0.000264 0.00572
GO:0050789 regulation of biological process 13.33% (18/135) 1.33 0.000293 0.00612
GO:0140110 transcription regulator activity 6.67% (9/135) 2.06 0.000352 0.007103
GO:0003712 transcription coregulator activity 2.96% (4/135) 3.6 0.000364 0.007115
GO:0010035 response to inorganic substance 2.22% (3/135) 4.41 0.000413 0.00782
GO:0051252 regulation of RNA metabolic process 8.15% (11/135) 1.73 0.000536 0.009845
GO:0030134 COPII-coated ER to Golgi transport vesicle 1.48% (2/135) 5.83 0.0006 0.010093
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment 1.48% (2/135) 5.76 0.000654 0.010159
GO:0042221 response to chemical 3.7% (5/135) 2.92 0.000573 0.010216
GO:0080090 regulation of primary metabolic process 8.89% (12/135) 1.61 0.000642 0.010238
GO:0051171 regulation of nitrogen compound metabolic process 8.89% (12/135) 1.62 0.000591 0.010239
GO:0097159 organic cyclic compound binding 25.19% (34/135) 0.81 0.000633 0.010371
GO:0060255 regulation of macromolecule metabolic process 9.63% (13/135) 1.5 0.000745 0.011005
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.15% (11/135) 1.67 0.00074 0.01121
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.19% (7/135) 2.23 0.000805 0.011341
GO:0031323 regulation of cellular metabolic process 9.63% (13/135) 1.49 0.000787 0.011352
GO:2000022 regulation of jasmonic acid mediated signaling pathway 1.48% (2/135) 5.57 0.000848 0.011676
GO:2000031 regulation of salicylic acid mediated signaling pathway 1.48% (2/135) 5.52 0.000912 0.012277
GO:0019222 regulation of metabolic process 9.63% (13/135) 1.45 0.001047 0.013505
GO:0010468 regulation of gene expression 8.89% (12/135) 1.53 0.001026 0.013519
GO:0010556 regulation of macromolecule biosynthetic process 8.89% (12/135) 1.52 0.001087 0.013723
GO:0016817 hydrolase activity, acting on acid anhydrides 5.19% (7/135) 2.1 0.001379 0.01466
GO:0016462 pyrophosphatase activity 5.19% (7/135) 2.14 0.001186 0.014664
GO:0033554 cellular response to stress 5.19% (7/135) 2.1 0.001365 0.014772
GO:0000469 obsolete cleavage involved in rRNA processing 0.74% (1/135) 9.54 0.001347 0.014843
GO:0006895 Golgi to endosome transport 0.74% (1/135) 9.54 0.001347 0.014843
GO:0009889 regulation of biosynthetic process 8.89% (12/135) 1.49 0.00127 0.015095
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.19% (7/135) 2.11 0.001306 0.015226
GO:0031326 regulation of cellular biosynthetic process 8.89% (12/135) 1.49 0.001263 0.015302
GO:1901700 response to oxygen-containing compound 2.22% (3/135) 3.82 0.00134 0.015322
GO:0042651 thylakoid membrane 2.22% (3/135) 3.72 0.001614 0.0163
GO:0034357 photosynthetic membrane 2.22% (3/135) 3.72 0.001614 0.0163
GO:0051716 cellular response to stimulus 5.19% (7/135) 2.06 0.001609 0.016814
GO:0010557 positive regulation of macromolecule biosynthetic process 2.96% (4/135) 2.95 0.001927 0.018536
GO:0009891 positive regulation of biosynthetic process 2.96% (4/135) 2.95 0.001927 0.018536
GO:0031328 positive regulation of cellular biosynthetic process 2.96% (4/135) 2.95 0.001927 0.018536
GO:0030173 obsolete integral component of Golgi membrane 1.48% (2/135) 4.93 0.002053 0.018851
GO:0045944 positive regulation of transcription by RNA polymerase II 2.22% (3/135) 3.61 0.002023 0.018861
GO:0034513 box H/ACA snoRNA binding 0.74% (1/135) 8.95 0.00202 0.019127
GO:0140326 ATPase-coupled intramembrane lipid transporter activity 1.48% (2/135) 4.85 0.002278 0.020608
GO:0007030 Golgi organization 1.48% (2/135) 4.83 0.002337 0.020823
GO:0030135 coated vesicle 1.48% (2/135) 4.78 0.002485 0.021209
GO:0045332 phospholipid translocation 1.48% (2/135) 4.79 0.002455 0.021252
GO:0140303 intramembrane lipid transporter activity 1.48% (2/135) 4.8 0.002425 0.021298
GO:0008117 sphinganine-1-phosphate aldolase activity 0.74% (1/135) 8.54 0.002693 0.022662
GO:0034204 lipid translocation 1.48% (2/135) 4.7 0.002779 0.023066
GO:0000470 maturation of LSU-rRNA 1.48% (2/135) 4.64 0.003021 0.024742
GO:0097035 regulation of membrane lipid distribution 1.48% (2/135) 4.62 0.003104 0.025084
GO:0110165 cellular anatomical entity 27.41% (37/135) 0.63 0.003318 0.026114
GO:0047958 glycine:2-oxoglutarate aminotransferase activity 0.74% (1/135) 8.21 0.003365 0.02614
GO:0016043 cellular component organization 7.41% (10/135) 1.49 0.003295 0.026276
GO:0015914 phospholipid transport 1.48% (2/135) 4.54 0.003447 0.026444
GO:0006950 response to stress 8.89% (12/135) 1.31 0.003549 0.026887
GO:0031325 positive regulation of cellular metabolic process 2.96% (4/135) 2.64 0.004156 0.031089
GO:0009853 photorespiration 0.74% (1/135) 7.87 0.00426 0.031481
GO:0031120 snRNA pseudouridine synthesis 0.74% (1/135) 7.8 0.004484 0.032735
GO:2001141 regulation of RNA biosynthetic process 6.67% (9/135) 1.51 0.004631 0.033018
GO:0006355 regulation of DNA-templated transcription 6.67% (9/135) 1.51 0.004631 0.033018
GO:0010236 plastoquinone biosynthetic process 0.74% (1/135) 7.73 0.004707 0.033169
GO:0031468 nuclear membrane reassembly 0.74% (1/135) 7.66 0.004931 0.033201
GO:0051743 red chlorophyll catabolite reductase activity 0.74% (1/135) 7.66 0.004931 0.033201
GO:0008883 glutamyl-tRNA reductase activity 0.74% (1/135) 7.66 0.004931 0.033201
GO:0006979 response to oxidative stress 2.22% (3/135) 3.14 0.004999 0.033289
GO:0031429 box H/ACA snoRNP complex 0.74% (1/135) 7.6 0.005154 0.033586
GO:0072588 box H/ACA RNP complex 0.74% (1/135) 7.6 0.005154 0.033586
GO:0034067 protein localization to Golgi apparatus 0.74% (1/135) 7.54 0.005378 0.033948
GO:0051230 spindle disassembly 0.74% (1/135) 7.54 0.005378 0.033948
GO:0051228 mitotic spindle disassembly 0.74% (1/135) 7.54 0.005378 0.033948
GO:0022607 cellular component assembly 3.7% (5/135) 2.2 0.004926 0.03431
GO:0097352 autophagosome maturation 0.74% (1/135) 7.48 0.005601 0.034994
GO:0006396 RNA processing 4.44% (6/135) 1.88 0.00613 0.037906
GO:0071709 membrane assembly 0.74% (1/135) 7.31 0.006271 0.038388
GO:0048522 positive regulation of cellular process 2.96% (4/135) 2.46 0.006357 0.038522
GO:0043226 organelle 14.81% (20/135) 0.86 0.006759 0.038643
GO:0071013 catalytic step 2 spliceosome 1.48% (2/135) 4.08 0.006451 0.038708
GO:0061024 membrane organization 2.22% (3/135) 2.96 0.007068 0.038939
GO:0043229 intracellular organelle 14.81% (20/135) 0.86 0.006752 0.038969
GO:0071012 catalytic step 1 spliceosome 0.74% (1/135) 7.21 0.006718 0.039144
GO:0071006 U2-type catalytic step 1 spliceosome 0.74% (1/135) 7.21 0.006718 0.039144
GO:0009893 positive regulation of metabolic process 2.96% (4/135) 2.42 0.007044 0.039163
GO:0030970 retrograde protein transport, ER to cytosol 0.74% (1/135) 7.08 0.007387 0.039268
GO:1903513 endoplasmic reticulum to cytosol transport 0.74% (1/135) 7.08 0.007387 0.039268
GO:0017070 U6 snRNA binding 0.74% (1/135) 7.08 0.007387 0.039268
GO:0033013 tetrapyrrole metabolic process 1.48% (2/135) 3.99 0.007199 0.039304
GO:0071840 cellular component organization or biogenesis 7.41% (10/135) 1.33 0.006959 0.039413
GO:0010604 positive regulation of macromolecule metabolic process 2.96% (4/135) 2.42 0.00703 0.039444
GO:0051173 positive regulation of nitrogen compound metabolic process 2.96% (4/135) 2.44 0.006716 0.039899
GO:0032527 protein exit from endoplasmic reticulum 0.74% (1/135) 7.03 0.00761 0.040102
GO:0051788 response to misfolded protein 0.74% (1/135) 6.76 0.00917 0.044813
GO:0061951 establishment of protein localization to plasma membrane 0.74% (1/135) 6.76 0.00917 0.044813
GO:0043001 Golgi to plasma membrane protein transport 0.74% (1/135) 6.76 0.00917 0.044813
GO:0071218 cellular response to misfolded protein 0.74% (1/135) 6.76 0.00917 0.044813
GO:0035966 response to topologically incorrect protein 0.74% (1/135) 6.69 0.009615 0.045521
GO:0035967 cellular response to topologically incorrect protein 0.74% (1/135) 6.69 0.009615 0.045521
GO:0015748 organophosphate ester transport 1.48% (2/135) 3.85 0.008725 0.045581
GO:0045893 positive regulation of DNA-templated transcription 2.22% (3/135) 2.83 0.009076 0.045833
GO:1902680 positive regulation of RNA biosynthetic process 2.22% (3/135) 2.83 0.009076 0.045833
GO:0046907 intracellular transport 3.7% (5/135) 1.99 0.008885 0.046018
GO:0022625 cytosolic large ribosomal subunit 1.48% (2/135) 3.78 0.00958 0.046074
GO:0050896 response to stimulus 8.89% (12/135) 1.13 0.008979 0.046114
GO:0048193 Golgi vesicle transport 2.22% (3/135) 2.8 0.009564 0.046366
GO:0051649 establishment of localization in cell 3.7% (5/135) 1.95 0.010179 0.047816
GO:0000338 protein deneddylation 0.74% (1/135) 6.6 0.010282 0.047931
GO:0006430 lysyl-tRNA aminoacylation 0.74% (1/135) 6.57 0.010505 0.048226
GO:0004824 lysine-tRNA ligase activity 0.74% (1/135) 6.57 0.010505 0.048226
GO:0035101 FACT complex 0.74% (1/135) 6.54 0.010727 0.048511
GO:0040031 snRNA modification 0.74% (1/135) 6.54 0.010727 0.048511
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (135) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms