Coexpression cluster: Cluster_1154 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003700 DNA-binding transcription factor activity 66.67% (4/6) 5.63 0.0 5e-06
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 50.0% (3/6) 7.52 0.0 6e-06
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 50.0% (3/6) 7.61 0.0 6e-06
GO:0000987 cis-regulatory region sequence-specific DNA binding 50.0% (3/6) 7.75 0.0 7e-06
GO:0140110 transcription regulator activity 66.67% (4/6) 5.38 1e-06 9e-06
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 50.0% (3/6) 7.84 0.0 1.2e-05
GO:0001067 transcription regulatory region nucleic acid binding 50.0% (3/6) 6.77 2e-06 1.3e-05
GO:0000976 transcription cis-regulatory region binding 50.0% (3/6) 6.77 2e-06 1.3e-05
GO:1990837 sequence-specific double-stranded DNA binding 50.0% (3/6) 6.67 2e-06 1.5e-05
GO:0006355 regulation of DNA-templated transcription 66.67% (4/6) 4.84 4e-06 2.2e-05
GO:2001141 regulation of RNA biosynthetic process 66.67% (4/6) 4.84 4e-06 2.2e-05
GO:0051252 regulation of RNA metabolic process 66.67% (4/6) 4.76 5e-06 2.5e-05
GO:0019219 regulation of nucleobase-containing compound metabolic process 66.67% (4/6) 4.71 6e-06 2.5e-05
GO:0006357 regulation of transcription by RNA polymerase II 50.0% (3/6) 6.24 6e-06 2.5e-05
GO:0003690 double-stranded DNA binding 50.0% (3/6) 6.09 8e-06 3e-05
GO:0080090 regulation of primary metabolic process 66.67% (4/6) 4.51 1e-05 3.5e-05
GO:0051171 regulation of nitrogen compound metabolic process 66.67% (4/6) 4.53 1e-05 3.6e-05
GO:0009889 regulation of biosynthetic process 66.67% (4/6) 4.4 1.4e-05 3.9e-05
GO:0010556 regulation of macromolecule biosynthetic process 66.67% (4/6) 4.42 1.3e-05 4e-05
GO:0031326 regulation of cellular biosynthetic process 66.67% (4/6) 4.4 1.4e-05 4.1e-05
GO:0010468 regulation of gene expression 66.67% (4/6) 4.43 1.3e-05 4.1e-05
GO:0043565 sequence-specific DNA binding 50.0% (3/6) 5.63 2e-05 4.8e-05
GO:0031323 regulation of cellular metabolic process 66.67% (4/6) 4.28 1.9e-05 4.8e-05
GO:0060255 regulation of macromolecule metabolic process 66.67% (4/6) 4.29 1.9e-05 4.9e-05
GO:0019222 regulation of metabolic process 66.67% (4/6) 4.24 2.2e-05 5e-05
GO:0045944 positive regulation of transcription by RNA polymerase II 33.33% (2/6) 7.52 5e-05 0.000109
GO:0050794 regulation of cellular process 66.67% (4/6) 3.73 8.9e-05 0.000188
GO:0050789 regulation of biological process 66.67% (4/6) 3.65 0.000108 0.00022
GO:1902680 positive regulation of RNA biosynthetic process 33.33% (2/6) 6.73 0.000146 0.000269
GO:0045893 positive regulation of DNA-templated transcription 33.33% (2/6) 6.73 0.000146 0.000269
GO:0065007 biological regulation 66.67% (4/6) 3.55 0.000143 0.000281
GO:0009891 positive regulation of biosynthetic process 33.33% (2/6) 6.44 0.000219 0.000357
GO:0031328 positive regulation of cellular biosynthetic process 33.33% (2/6) 6.44 0.000219 0.000357
GO:0010557 positive regulation of macromolecule biosynthetic process 33.33% (2/6) 6.44 0.000219 0.000357
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 33.33% (2/6) 6.4 0.000231 0.000366
GO:0051254 positive regulation of RNA metabolic process 33.33% (2/6) 6.48 0.000207 0.000369
GO:0031325 positive regulation of cellular metabolic process 33.33% (2/6) 6.13 0.000336 0.000518
GO:0046983 protein dimerization activity 33.33% (2/6) 6.08 0.000358 0.000537
GO:0009893 positive regulation of metabolic process 33.33% (2/6) 5.91 0.000455 0.000617
GO:0048522 positive regulation of cellular process 33.33% (2/6) 5.95 0.000429 0.000626
GO:0051173 positive regulation of nitrogen compound metabolic process 33.33% (2/6) 5.93 0.000442 0.00063
GO:0010604 positive regulation of macromolecule metabolic process 33.33% (2/6) 5.91 0.000454 0.000632
GO:0003677 DNA binding 50.0% (3/6) 4.09 0.000478 0.000634
GO:0048518 positive regulation of biological process 33.33% (2/6) 5.69 0.000614 0.000795
GO:0003676 nucleic acid binding 50.0% (3/6) 2.93 0.004884 0.006186
GO:0005634 nucleus 33.33% (2/6) 3.17 0.018568 0.023008
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (6) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms