Coexpression cluster: Cluster_289 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016558 protein import into peroxisome matrix 6.67% (6/90) 8.32 0.0 0.0
GO:0072663 establishment of protein localization to peroxisome 6.67% (6/90) 7.98 0.0 0.0
GO:0072662 protein localization to peroxisome 6.67% (6/90) 7.98 0.0 0.0
GO:0043574 peroxisomal transport 6.67% (6/90) 7.42 0.0 0.0
GO:0015919 peroxisomal membrane transport 6.67% (6/90) 7.42 0.0 0.0
GO:0065002 intracellular protein transmembrane transport 6.67% (6/90) 7.13 0.0 0.0
GO:0007031 peroxisome organization 6.67% (6/90) 7.16 0.0 0.0
GO:0044743 protein transmembrane import into intracellular organelle 6.67% (6/90) 6.98 0.0 0.0
GO:0005778 peroxisomal membrane 6.67% (6/90) 6.74 0.0 0.0
GO:0031903 microbody membrane 6.67% (6/90) 6.74 0.0 0.0
GO:0071806 protein transmembrane transport 6.67% (6/90) 6.12 0.0 0.0
GO:0003712 transcription coregulator activity 7.78% (7/90) 4.99 0.0 0.0
GO:0043226 organelle 28.89% (26/90) 1.82 0.0 0.0
GO:0043229 intracellular organelle 28.89% (26/90) 1.82 0.0 0.0
GO:0042579 microbody 6.67% (6/90) 5.09 0.0 1e-06
GO:0005575 cellular_component 45.56% (41/90) 1.19 0.0 1e-06
GO:0043231 intracellular membrane-bounded organelle 25.56% (23/90) 1.87 0.0 1e-06
GO:0043227 membrane-bounded organelle 25.56% (23/90) 1.85 0.0 1e-06
GO:0110165 cellular anatomical entity 41.11% (37/90) 1.22 0.0 3e-06
GO:0006357 regulation of transcription by RNA polymerase II 8.89% (8/90) 3.74 0.0 3e-06
GO:0072594 establishment of protein localization to organelle 6.67% (6/90) 4.22 1e-06 1.7e-05
GO:0033365 protein localization to organelle 6.67% (6/90) 4.11 2e-06 2.6e-05
GO:0098588 bounding membrane of organelle 7.78% (7/90) 3.52 3e-06 4.7e-05
GO:0010468 regulation of gene expression 14.44% (13/90) 2.23 4e-06 6e-05
GO:0010556 regulation of macromolecule biosynthetic process 14.44% (13/90) 2.22 4e-06 6.2e-05
GO:0009889 regulation of biosynthetic process 14.44% (13/90) 2.19 5e-06 6.8e-05
GO:0031326 regulation of cellular biosynthetic process 14.44% (13/90) 2.19 5e-06 7e-05
GO:0003676 nucleic acid binding 21.11% (19/90) 1.68 5e-06 7.2e-05
GO:0016887 ATP hydrolysis activity 7.78% (7/90) 3.36 6e-06 7.7e-05
GO:2001141 regulation of RNA biosynthetic process 12.22% (11/90) 2.39 9e-06 9.9e-05
GO:0006355 regulation of DNA-templated transcription 12.22% (11/90) 2.39 9e-06 9.9e-05
GO:0006886 intracellular protein transport 6.67% (6/90) 3.64 1e-05 0.000112
GO:0060255 regulation of macromolecule metabolic process 14.44% (13/90) 2.09 1.1e-05 0.000124
GO:0031323 regulation of cellular metabolic process 14.44% (13/90) 2.08 1.2e-05 0.000129
GO:0097159 organic cyclic compound binding 32.22% (29/90) 1.17 1.4e-05 0.000138
GO:0051252 regulation of RNA metabolic process 12.22% (11/90) 2.32 1.4e-05 0.000139
GO:0140110 transcription regulator activity 10.0% (9/90) 2.64 1.5e-05 0.000146
GO:0019222 regulation of metabolic process 14.44% (13/90) 2.03 1.7e-05 0.00016
GO:0019219 regulation of nucleobase-containing compound metabolic process 12.22% (11/90) 2.26 2e-05 0.000179
GO:0015031 protein transport 6.67% (6/90) 3.3 3.6e-05 0.000326
GO:0031090 organelle membrane 7.78% (7/90) 2.93 4.1e-05 0.000353
GO:0003690 double-stranded DNA binding 6.67% (6/90) 3.18 5.8e-05 0.00049
GO:0051171 regulation of nitrogen compound metabolic process 12.22% (11/90) 2.08 6e-05 0.000499
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.78% (7/90) 2.82 6.7e-05 0.000529
GO:0080090 regulation of primary metabolic process 12.22% (11/90) 2.07 6.5e-05 0.000531
GO:0003677 DNA binding 12.22% (11/90) 2.05 7e-05 0.000547
GO:0016462 pyrophosphatase activity 7.78% (7/90) 2.72 0.000101 0.000768
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.78% (7/90) 2.7 0.000112 0.000835
GO:0016817 hydrolase activity, acting on acid anhydrides 7.78% (7/90) 2.68 0.000119 0.00085
GO:0045184 establishment of protein localization 6.67% (6/90) 2.99 0.000117 0.000852
GO:0005634 nucleus 13.33% (12/90) 1.85 0.000122 0.000854
GO:0003674 molecular_function 54.44% (49/90) 0.62 0.000165 0.001133
GO:0016836 hydro-lyase activity 3.33% (3/90) 4.77 0.000197 0.001327
GO:0033036 macromolecule localization 6.67% (6/90) 2.83 0.000214 0.001342
GO:0070727 cellular macromolecule localization 6.67% (6/90) 2.83 0.000212 0.001352
GO:0008104 protein localization 6.67% (6/90) 2.84 0.000209 0.00136
GO:0046907 intracellular transport 6.67% (6/90) 2.84 0.000206 0.00136
GO:0051649 establishment of localization in cell 6.67% (6/90) 2.79 0.000247 0.001517
GO:0006996 organelle organization 7.78% (7/90) 2.46 0.000301 0.001822
GO:0071705 nitrogen compound transport 6.67% (6/90) 2.57 0.000562 0.003343
GO:0050794 regulation of cellular process 14.44% (13/90) 1.52 0.000579 0.003391
GO:0005488 binding 37.78% (34/90) 0.74 0.000807 0.004648
GO:0016835 carbon-oxygen lyase activity 3.33% (3/90) 4.0 0.000926 0.005165
GO:0050789 regulation of biological process 14.44% (13/90) 1.45 0.000913 0.005171
GO:0051641 cellular localization 6.67% (6/90) 2.33 0.001302 0.007151
GO:0033290 eukaryotic 48S preinitiation complex 1.11% (1/90) 9.25 0.001646 0.008905
GO:0003729 mRNA binding 4.44% (4/90) 2.98 0.001744 0.009156
GO:0065007 biological regulation 14.44% (13/90) 1.35 0.001726 0.009199
GO:0071702 organic substance transport 6.67% (6/90) 2.24 0.001789 0.009254
GO:0005829 cytosol 6.67% (6/90) 2.23 0.001837 0.009366
GO:0009081 branched-chain amino acid metabolic process 2.22% (2/90) 4.96 0.001953 0.009822
GO:0006082 organic acid metabolic process 6.67% (6/90) 2.19 0.002125 0.009854
GO:0043436 oxoacid metabolic process 6.67% (6/90) 2.19 0.002117 0.009945
GO:0008652 amino acid biosynthetic process 3.33% (3/90) 3.59 0.002098 0.009989
GO:0004198 calcium-dependent cysteine-type endopeptidase activity 1.11% (1/90) 8.9 0.002095 0.010106
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 1.11% (1/90) 8.9 0.002095 0.010106
GO:0019752 carboxylic acid metabolic process 6.67% (6/90) 2.2 0.002087 0.010349
GO:0055085 transmembrane transport 7.78% (7/90) 1.94 0.002435 0.011143
GO:0004333 fumarate hydratase activity 1.11% (1/90) 8.62 0.002543 0.011348
GO:0006106 fumarate metabolic process 1.11% (1/90) 8.62 0.002543 0.011348
GO:0016020 membrane 14.44% (13/90) 1.26 0.002832 0.012482
GO:0070993 translation preinitiation complex 1.11% (1/90) 8.38 0.002991 0.013022
GO:0003723 RNA binding 7.78% (7/90) 1.82 0.003824 0.016449
GO:0008150 biological_process 41.11% (37/90) 0.56 0.004497 0.019114
GO:0003852 2-isopropylmalate synthase activity 1.11% (1/90) 7.75 0.004633 0.019457
GO:0047769 arogenate dehydratase activity 1.11% (1/90) 7.62 0.00508 0.020844
GO:0004664 prephenate dehydratase activity 1.11% (1/90) 7.62 0.00508 0.020844
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 1.11% (1/90) 7.58 0.005229 0.020973
GO:0009094 L-phenylalanine biosynthetic process 1.11% (1/90) 7.58 0.005229 0.020973
GO:0006520 amino acid metabolic process 4.44% (4/90) 2.53 0.005338 0.021176
GO:0009098 leucine biosynthetic process 1.11% (1/90) 7.28 0.00642 0.025186
GO:0004084 branched-chain-amino-acid transaminase activity 1.11% (1/90) 7.06 0.007461 0.028953
GO:0005850 eukaryotic translation initiation factor 2 complex 1.11% (1/90) 7.03 0.00761 0.029212
GO:0071039 nuclear polyadenylation-dependent CUT catabolic process 1.11% (1/90) 6.75 0.009244 0.032353
GO:0071037 nuclear polyadenylation-dependent snRNA catabolic process 1.11% (1/90) 6.75 0.009244 0.032353
GO:0071036 nuclear polyadenylation-dependent snoRNA catabolic process 1.11% (1/90) 6.75 0.009244 0.032353
GO:0016077 sno(s)RNA catabolic process 1.11% (1/90) 6.75 0.009244 0.032353
GO:0016076 snRNA catabolic process 1.11% (1/90) 6.75 0.009244 0.032353
GO:0071040 nuclear polyadenylation-dependent antisense transcript catabolic process 1.11% (1/90) 6.8 0.008947 0.032928
GO:0071044 histone mRNA catabolic process 1.11% (1/90) 6.8 0.008947 0.032928
GO:0071041 antisense RNA transcript catabolic process 1.11% (1/90) 6.8 0.008947 0.032928
GO:0042868 antisense RNA metabolic process 1.11% (1/90) 6.8 0.008947 0.032928
GO:0016043 cellular component organization 7.78% (7/90) 1.56 0.010026 0.03475
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 1.11% (1/90) 6.56 0.010579 0.036313
GO:0046394 carboxylic acid biosynthetic process 3.33% (3/90) 2.68 0.011889 0.04004
GO:0016053 organic acid biosynthetic process 3.33% (3/90) 2.68 0.011889 0.04004
GO:0016829 lyase activity 3.33% (3/90) 2.66 0.012184 0.040652
GO:0071043 CUT metabolic process 1.11% (1/90) 6.23 0.013243 0.043373
GO:0071034 CUT catabolic process 1.11% (1/90) 6.23 0.013243 0.043373
GO:0016602 CCAAT-binding factor complex 1.11% (1/90) 6.05 0.015015 0.048731
GO:0000105 histidine biosynthetic process 1.11% (1/90) 6.0 0.015458 0.049271
GO:0006547 histidine metabolic process 1.11% (1/90) 6.0 0.015458 0.049271
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (90) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms