Coexpression cluster: Cluster_1403 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0045116 protein neddylation 75.0% (3/4) 12.74 0.0 0.0
GO:0097602 cullin family protein binding 75.0% (3/4) 11.94 0.0 0.0
GO:0031624 ubiquitin conjugating enzyme binding 75.0% (3/4) 10.61 0.0 0.0
GO:0044390 ubiquitin-like protein conjugating enzyme binding 75.0% (3/4) 10.38 0.0 0.0
GO:0032182 ubiquitin-like protein binding 75.0% (3/4) 9.49 0.0 0.0
GO:0000151 ubiquitin ligase complex 75.0% (3/4) 8.13 0.0 1e-06
GO:0019899 enzyme binding 75.0% (3/4) 7.77 0.0 2e-06
GO:0032446 protein modification by small protein conjugation 75.0% (3/4) 6.72 1e-06 1.4e-05
GO:0140535 intracellular protein-containing complex 75.0% (3/4) 6.39 3e-06 2.2e-05
GO:1990234 transferase complex 75.0% (3/4) 6.34 3e-06 2.2e-05
GO:0070647 protein modification by small protein conjugation or removal 75.0% (3/4) 6.39 3e-06 2.4e-05
GO:0043687 post-translational protein modification 75.0% (3/4) 6.09 5e-06 3.4e-05
GO:1902494 catalytic complex 75.0% (3/4) 5.52 1.7e-05 0.000105
GO:1901564 organonitrogen compound metabolic process 100.0% (4/4) 3.59 4.7e-05 0.000263
GO:0006807 nitrogen compound metabolic process 100.0% (4/4) 3.05 0.000212 0.001103
GO:0004834 tryptophan synthase activity 25.0% (1/4) 11.52 0.000339 0.001655
GO:0032991 protein-containing complex 75.0% (3/4) 4.02 0.000383 0.001758
GO:0044238 primary metabolic process 100.0% (4/4) 2.8 0.000429 0.001859
GO:0036211 protein modification process 75.0% (3/4) 3.92 0.000472 0.001936
GO:0071704 organic substance metabolic process 100.0% (4/4) 2.71 0.000546 0.002131
GO:0043412 macromolecule modification 75.0% (3/4) 3.73 0.000686 0.002432
GO:0008152 metabolic process 100.0% (4/4) 2.64 0.000662 0.00246
GO:0019538 protein metabolic process 75.0% (3/4) 3.53 0.001041 0.003529
GO:0042430 indole-containing compound metabolic process 25.0% (1/4) 9.21 0.001683 0.004235
GO:0006586 indolalkylamine metabolic process 25.0% (1/4) 9.21 0.001683 0.004235
GO:0006568 tryptophan metabolic process 25.0% (1/4) 9.21 0.001683 0.004235
GO:0000162 tryptophan biosynthetic process 25.0% (1/4) 9.46 0.001417 0.004251
GO:0042435 indole-containing compound biosynthetic process 25.0% (1/4) 9.46 0.001417 0.004251
GO:0046219 indolalkylamine biosynthetic process 25.0% (1/4) 9.46 0.001417 0.004251
GO:0005575 cellular_component 100.0% (4/4) 2.32 0.001597 0.00445
GO:0005515 protein binding 75.0% (3/4) 3.32 0.001586 0.004583
GO:0042401 biogenic amine biosynthetic process 25.0% (1/4) 8.73 0.002348 0.005549
GO:0009309 amine biosynthetic process 25.0% (1/4) 8.73 0.002348 0.005549
GO:0009073 aromatic amino acid family biosynthetic process 25.0% (1/4) 8.49 0.002773 0.006361
GO:0006576 biogenic amine metabolic process 25.0% (1/4) 8.23 0.003337 0.007437
GO:0043170 macromolecule metabolic process 75.0% (3/4) 2.78 0.004741 0.010272
GO:0016836 hydro-lyase activity 25.0% (1/4) 7.68 0.004877 0.010281
GO:0009072 aromatic amino acid metabolic process 25.0% (1/4) 7.6 0.005155 0.010582
GO:0009308 amine metabolic process 25.0% (1/4) 7.53 0.005414 0.010828
GO:0008150 biological_process 100.0% (4/4) 1.85 0.005987 0.011676
GO:0016835 carbon-oxygen lyase activity 25.0% (1/4) 6.91 0.008308 0.015805
GO:1901607 alpha-amino acid biosynthetic process 25.0% (1/4) 6.6 0.010238 0.019013
GO:0008652 amino acid biosynthetic process 25.0% (1/4) 6.49 0.011063 0.020068
GO:0003674 molecular_function 100.0% (4/4) 1.5 0.015629 0.027705
GO:1901605 alpha-amino acid metabolic process 25.0% (1/4) 5.93 0.016287 0.028232
GO:0016829 lyase activity 25.0% (1/4) 5.57 0.020888 0.033944
GO:0016053 organic acid biosynthetic process 25.0% (1/4) 5.58 0.020698 0.03435
GO:0046394 carboxylic acid biosynthetic process 25.0% (1/4) 5.58 0.020698 0.03435
GO:0009507 chloroplast 25.0% (1/4) 5.37 0.024003 0.038209
GO:0009536 plastid 25.0% (1/4) 5.33 0.024657 0.038465
GO:0006520 amino acid metabolic process 25.0% (1/4) 5.02 0.030497 0.045746
GO:0044283 small molecule biosynthetic process 25.0% (1/4) 5.02 0.030374 0.046454
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (4) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms