Coexpression cluster: Cluster_174 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005200 structural constituent of cytoskeleton 18.18% (14/77) 9.18 0.0 0.0
GO:0032561 guanyl ribonucleotide binding 27.27% (21/77) 6.24 0.0 0.0
GO:0005525 GTP binding 27.27% (21/77) 6.24 0.0 0.0
GO:0019001 guanyl nucleotide binding 27.27% (21/77) 6.19 0.0 0.0
GO:0000278 mitotic cell cycle 18.18% (14/77) 7.76 0.0 0.0
GO:0005737 cytoplasm 41.56% (32/77) 3.69 0.0 0.0
GO:0007049 cell cycle 18.18% (14/77) 7.28 0.0 0.0
GO:0017076 purine nucleotide binding 51.95% (40/77) 2.9 0.0 0.0
GO:1901265 nucleoside phosphate binding 51.95% (40/77) 2.84 0.0 0.0
GO:0000166 nucleotide binding 51.95% (40/77) 2.84 0.0 0.0
GO:1901363 heterocyclic compound binding 51.95% (40/77) 2.8 0.0 0.0
GO:0036094 small molecule binding 51.95% (40/77) 2.79 0.0 0.0
GO:0005874 microtubule 18.18% (14/77) 6.61 0.0 0.0
GO:0099081 supramolecular polymer 18.18% (14/77) 6.48 0.0 0.0
GO:0099512 supramolecular fiber 18.18% (14/77) 6.48 0.0 0.0
GO:0099513 polymeric cytoskeletal fiber 18.18% (14/77) 6.48 0.0 0.0
GO:0046705 CDP biosynthetic process 10.39% (8/77) 10.0 0.0 0.0
GO:0046704 CDP metabolic process 10.39% (8/77) 10.0 0.0 0.0
GO:0000226 microtubule cytoskeleton organization 18.18% (14/77) 6.13 0.0 0.0
GO:0009188 ribonucleoside diphosphate biosynthetic process 10.39% (8/77) 9.57 0.0 0.0
GO:0033862 UMP kinase activity 10.39% (8/77) 9.57 0.0 0.0
GO:0009041 UMP/dUMP kinase activity 10.39% (8/77) 9.57 0.0 0.0
GO:0006225 UDP biosynthetic process 10.39% (8/77) 9.57 0.0 0.0
GO:0009194 pyrimidine ribonucleoside diphosphate biosynthetic process 10.39% (8/77) 9.57 0.0 0.0
GO:0004127 cytidylate kinase activity 10.39% (8/77) 9.61 0.0 0.0
GO:0009193 pyrimidine ribonucleoside diphosphate metabolic process 10.39% (8/77) 9.56 0.0 0.0
GO:0046048 UDP metabolic process 10.39% (8/77) 9.56 0.0 0.0
GO:0009133 nucleoside diphosphate biosynthetic process 10.39% (8/77) 9.49 0.0 0.0
GO:0009139 pyrimidine nucleoside diphosphate biosynthetic process 10.39% (8/77) 9.49 0.0 0.0
GO:0009138 pyrimidine nucleoside diphosphate metabolic process 10.39% (8/77) 9.47 0.0 0.0
GO:0043168 anion binding 46.75% (36/77) 2.66 0.0 0.0
GO:0099080 supramolecular complex 18.18% (14/77) 5.75 0.0 0.0
GO:0007010 cytoskeleton organization 18.18% (14/77) 5.73 0.0 0.0
GO:0007017 microtubule-based process 18.18% (14/77) 5.53 0.0 0.0
GO:0051287 NAD binding 14.29% (11/77) 6.67 0.0 0.0
GO:0050145 nucleoside monophosphate kinase activity 10.39% (8/77) 8.52 0.0 0.0
GO:0005198 structural molecule activity 18.18% (14/77) 5.25 0.0 0.0
GO:0042732 D-xylose metabolic process 9.09% (7/77) 9.21 0.0 0.0
GO:0048040 UDP-glucuronate decarboxylase activity 9.09% (7/77) 9.21 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 37.66% (29/77) 2.83 0.0 0.0
GO:0110165 cellular anatomical entity 61.04% (47/77) 1.79 0.0 0.0
GO:0070403 NAD+ binding 9.09% (7/77) 8.42 0.0 0.0
GO:0019205 nucleobase-containing compound kinase activity 10.39% (8/77) 7.5 0.0 0.0
GO:0009218 pyrimidine ribonucleotide metabolic process 10.39% (8/77) 7.38 0.0 0.0
GO:0043167 ion binding 46.75% (36/77) 2.18 0.0 0.0
GO:0009220 pyrimidine ribonucleotide biosynthetic process 10.39% (8/77) 7.38 0.0 0.0
GO:0016776 phosphotransferase activity, phosphate group as acceptor 10.39% (8/77) 7.36 0.0 0.0
GO:0019321 pentose metabolic process 9.09% (7/77) 8.06 0.0 0.0
GO:0006220 pyrimidine nucleotide metabolic process 10.39% (8/77) 7.13 0.0 0.0
GO:0006221 pyrimidine nucleotide biosynthetic process 10.39% (8/77) 7.13 0.0 0.0
GO:1901137 carbohydrate derivative biosynthetic process 15.58% (12/77) 5.09 0.0 0.0
GO:0005575 cellular_component 61.04% (47/77) 1.61 0.0 0.0
GO:0032555 purine ribonucleotide binding 37.66% (29/77) 2.49 0.0 0.0
GO:0032553 ribonucleotide binding 37.66% (29/77) 2.48 0.0 0.0
GO:0097367 carbohydrate derivative binding 37.66% (29/77) 2.47 0.0 0.0
GO:0097159 organic cyclic compound binding 51.95% (40/77) 1.86 0.0 0.0
GO:0072528 pyrimidine-containing compound biosynthetic process 10.39% (8/77) 6.76 0.0 0.0
GO:0072527 pyrimidine-containing compound metabolic process 10.39% (8/77) 6.64 0.0 0.0
GO:1901135 carbohydrate derivative metabolic process 16.88% (13/77) 4.27 0.0 0.0
GO:0009185 ribonucleoside diphosphate metabolic process 10.39% (8/77) 6.06 0.0 0.0
GO:0009132 nucleoside diphosphate metabolic process 10.39% (8/77) 6.06 0.0 0.0
GO:0030203 glycosaminoglycan metabolic process 6.49% (5/77) 8.47 0.0 0.0
GO:0003979 UDP-glucose 6-dehydrogenase activity 5.19% (4/77) 10.18 0.0 0.0
GO:0006996 organelle organization 18.18% (14/77) 3.69 0.0 0.0
GO:0009260 ribonucleotide biosynthetic process 10.39% (8/77) 5.66 0.0 0.0
GO:0046390 ribose phosphate biosynthetic process 10.39% (8/77) 5.61 0.0 0.0
GO:0016831 carboxy-lyase activity 9.09% (7/77) 6.13 0.0 0.0
GO:0005488 binding 57.14% (44/77) 1.34 0.0 0.0
GO:0009165 nucleotide biosynthetic process 10.39% (8/77) 5.2 0.0 0.0
GO:1901293 nucleoside phosphate biosynthetic process 10.39% (8/77) 5.2 0.0 0.0
GO:0006024 glycosaminoglycan biosynthetic process 5.19% (4/77) 9.02 0.0 0.0
GO:0006023 aminoglycan biosynthetic process 5.19% (4/77) 9.02 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 15.58% (12/77) 3.65 0.0 0.0
GO:0008150 biological_process 62.34% (48/77) 1.16 0.0 0.0
GO:0006022 aminoglycan metabolic process 6.49% (5/77) 7.21 0.0 0.0
GO:0016830 carbon-carbon lyase activity 9.09% (7/77) 5.46 0.0 0.0
GO:0015098 molybdate ion transmembrane transporter activity 5.19% (4/77) 8.63 0.0 0.0
GO:0015689 molybdate ion transport 5.19% (4/77) 8.63 0.0 0.0
GO:0044281 small molecule metabolic process 19.48% (15/77) 3.04 0.0 0.0
GO:0005996 monosaccharide metabolic process 9.09% (7/77) 5.38 0.0 0.0
GO:0009259 ribonucleotide metabolic process 10.39% (8/77) 4.58 0.0 0.0
GO:0019693 ribose phosphate metabolic process 10.39% (8/77) 4.52 0.0 0.0
GO:0003924 GTPase activity 9.09% (7/77) 4.71 0.0 0.0
GO:0009987 cellular process 46.75% (36/77) 1.34 0.0 0.0
GO:0016043 cellular component organization 18.18% (14/77) 2.78 0.0 0.0
GO:0009117 nucleotide metabolic process 10.39% (8/77) 4.15 0.0 0.0
GO:0006753 nucleoside phosphate metabolic process 10.39% (8/77) 4.14 0.0 0.0
GO:0090407 organophosphate biosynthetic process 10.39% (8/77) 4.09 0.0 0.0
GO:0003674 molecular_function 66.23% (51/77) 0.91 0.0 0.0
GO:0071840 cellular component organization or biogenesis 18.18% (14/77) 2.62 0.0 0.0
GO:0055086 nucleobase-containing small molecule metabolic process 10.39% (8/77) 3.93 0.0 0.0
GO:0016829 lyase activity 9.09% (7/77) 4.11 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 10.39% (8/77) 3.6 0.0 1e-06
GO:0030554 adenyl nucleotide binding 24.68% (19/77) 1.91 0.0 1e-06
GO:0015698 inorganic anion transport 5.19% (4/77) 6.1 0.0 1e-06
GO:0015103 inorganic anion transmembrane transporter activity 5.19% (4/77) 5.91 1e-06 2e-06
GO:0018130 heterocycle biosynthetic process 10.39% (8/77) 3.24 2e-06 5e-06
GO:0019637 organophosphate metabolic process 10.39% (8/77) 3.19 3e-06 6e-06
GO:0044249 cellular biosynthetic process 15.58% (12/77) 2.37 3e-06 7e-06
GO:0019438 aromatic compound biosynthetic process 10.39% (8/77) 3.17 3e-06 7e-06
GO:0016192 vesicle-mediated transport 9.09% (7/77) 3.47 4e-06 8e-06
GO:0043231 intracellular membrane-bounded organelle 23.38% (18/77) 1.74 5e-06 1e-05
GO:0043227 membrane-bounded organelle 23.38% (18/77) 1.73 5e-06 1.1e-05
GO:1901362 organic cyclic compound biosynthetic process 10.39% (8/77) 3.02 7e-06 1.5e-05
GO:1901576 organic substance biosynthetic process 15.58% (12/77) 2.25 8e-06 1.6e-05
GO:0009058 biosynthetic process 15.58% (12/77) 2.17 1.3e-05 2.7e-05
GO:0005975 carbohydrate metabolic process 10.39% (8/77) 2.8 2.1e-05 4.3e-05
GO:0044271 cellular nitrogen compound biosynthetic process 10.39% (8/77) 2.77 2.4e-05 4.8e-05
GO:0017111 ribonucleoside triphosphate phosphatase activity 9.09% (7/77) 3.04 2.4e-05 4.9e-05
GO:0005634 nucleus 15.58% (12/77) 2.08 2.6e-05 5.1e-05
GO:0071705 nitrogen compound transport 9.09% (7/77) 3.01 2.7e-05 5.4e-05
GO:0043226 organelle 23.38% (18/77) 1.52 3.8e-05 7.2e-05
GO:0016462 pyrophosphatase activity 9.09% (7/77) 2.95 3.7e-05 7.2e-05
GO:0043229 intracellular organelle 23.38% (18/77) 1.52 3.8e-05 7.2e-05
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 9.09% (7/77) 2.92 4.1e-05 7.8e-05
GO:0016817 hydrolase activity, acting on acid anhydrides 9.09% (7/77) 2.91 4.4e-05 8.3e-05
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 2.6% (2/77) 7.59 5.2e-05 9.7e-05
GO:0003824 catalytic activity 36.36% (28/77) 1.01 0.000113 0.000209
GO:0006810 transport 14.29% (11/77) 1.94 0.000127 0.000234
GO:0051234 establishment of localization 14.29% (11/77) 1.88 0.000188 0.000342
GO:0051179 localization 14.29% (11/77) 1.83 0.000258 0.000464
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 5.19% (4/77) 3.62 0.000336 0.0006
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 5.19% (4/77) 3.49 0.000475 0.000841
GO:1901702 salt transmembrane transporter activity 5.19% (4/77) 3.47 0.000493 0.000866
GO:0019856 pyrimidine nucleobase biosynthetic process 2.6% (2/77) 5.72 0.00069 0.001204
GO:0005768 endosome 3.9% (3/77) 4.02 0.000884 0.001529
GO:0006206 pyrimidine nucleobase metabolic process 2.6% (2/77) 5.52 0.000903 0.00155
GO:0046112 nucleobase biosynthetic process 2.6% (2/77) 5.33 0.001172 0.001997
GO:0008152 metabolic process 29.87% (23/77) 0.9 0.001732 0.002927
GO:0009112 nucleobase metabolic process 2.6% (2/77) 4.97 0.001925 0.003227
GO:0031410 cytoplasmic vesicle 3.9% (3/77) 3.55 0.002225 0.003675
GO:0097708 intracellular vesicle 3.9% (3/77) 3.55 0.002225 0.003675
GO:0015318 inorganic molecular entity transmembrane transporter activity 5.19% (4/77) 2.87 0.002266 0.003714
GO:0031982 vesicle 3.9% (3/77) 3.29 0.003687 0.005999
GO:0140647 P450-containing electron transport chain 1.3% (1/77) 7.89 0.00422 0.006764
GO:0005460 UDP-glucose transmembrane transporter activity 1.3% (1/77) 7.89 0.00422 0.006764
GO:0005794 Golgi apparatus 3.9% (3/77) 3.21 0.004314 0.006865
GO:0005096 GTPase activator activity 2.6% (2/77) 4.29 0.004824 0.007621
GO:0071704 organic substance metabolic process 27.27% (21/77) 0.84 0.004894 0.007676
GO:0004563 beta-N-acetylhexosaminidase activity 1.3% (1/77) 7.32 0.00626 0.009678
GO:0015929 hexosaminidase activity 1.3% (1/77) 7.32 0.00626 0.009678
GO:0016301 kinase activity 10.39% (8/77) 1.5 0.007464 0.011458
GO:0006886 intracellular protein transport 3.9% (3/77) 2.86 0.008395 0.012797
GO:0043733 DNA-3-methylbase glycosylase activity 1.3% (1/77) 6.84 0.008676 0.013044
GO:0008725 DNA-3-methyladenine glycosylase activity 1.3% (1/77) 6.84 0.008676 0.013044
GO:0005459 UDP-galactose transmembrane transporter activity 1.3% (1/77) 6.8 0.00893 0.013334
GO:0003905 alkylbase DNA N-glycosylase activity 1.3% (1/77) 6.7 0.009565 0.014185
GO:0006139 nucleobase-containing compound metabolic process 11.69% (9/77) 1.31 0.010044 0.014794
GO:1901564 organonitrogen compound metabolic process 16.88% (13/77) 1.03 0.01044 0.015274
GO:0030695 GTPase regulator activity 2.6% (2/77) 3.65 0.011306 0.016322
GO:0060589 nucleoside-triphosphatase regulator activity 2.6% (2/77) 3.65 0.011306 0.016322
GO:0005543 phospholipid binding 2.6% (2/77) 3.49 0.013986 0.020058
GO:0046483 heterocycle metabolic process 11.69% (9/77) 1.22 0.015201 0.021659
GO:0015031 protein transport 3.9% (3/77) 2.53 0.015588 0.022065
GO:0016772 transferase activity, transferring phosphorus-containing groups 10.39% (8/77) 1.3 0.015814 0.022241
GO:0008047 enzyme activator activity 2.6% (2/77) 3.38 0.016078 0.022467
GO:0009059 macromolecule biosynthetic process 5.19% (4/77) 2.04 0.016593 0.02304
GO:0006725 cellular aromatic compound metabolic process 11.69% (9/77) 1.18 0.017398 0.024005
GO:0140677 molecular function activator activity 2.6% (2/77) 3.29 0.018039 0.024733
GO:1901360 organic cyclic compound metabolic process 11.69% (9/77) 1.14 0.020572 0.02803
GO:0034641 cellular nitrogen compound metabolic process 11.69% (9/77) 1.13 0.021546 0.029175
GO:0006796 phosphate-containing compound metabolic process 10.39% (8/77) 1.21 0.021977 0.029575
GO:0006793 phosphorus metabolic process 10.39% (8/77) 1.2 0.022656 0.0303
GO:0016787 hydrolase activity 11.69% (9/77) 1.09 0.024921 0.033127
GO:0045184 establishment of protein localization 3.9% (3/77) 2.22 0.027083 0.035782
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 1.3% (1/77) 5.13 0.028177 0.037003
GO:0044237 cellular metabolic process 19.48% (15/77) 0.73 0.032673 0.042651
GO:0051537 2 iron, 2 sulfur cluster binding 1.3% (1/77) 4.85 0.034138 0.044298
GO:0019104 DNA N-glycosylase activity 1.3% (1/77) 4.83 0.03451 0.044515
GO:0005338 nucleotide-sugar transmembrane transporter activity 1.3% (1/77) 4.82 0.034757 0.044571
GO:0033036 macromolecule localization 3.9% (3/77) 2.06 0.036008 0.044855
GO:0005524 ATP binding 10.39% (8/77) 1.08 0.035876 0.044948
GO:0046907 intracellular transport 3.9% (3/77) 2.07 0.035325 0.045034
GO:0070727 cellular macromolecule localization 3.9% (3/77) 2.06 0.035832 0.045153
GO:0008104 protein localization 3.9% (3/77) 2.06 0.035626 0.045153
GO:0051649 establishment of localization in cell 3.9% (3/77) 2.02 0.038444 0.047618
GO:0008289 lipid binding 2.6% (2/77) 2.67 0.039837 0.049065
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (77) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms