Coexpression cluster: Cluster_421 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003713 transcription coactivator activity 6.98% (6/86) 6.9 0.0 0.0
GO:0016592 mediator complex 6.98% (6/86) 6.33 0.0 0.0
GO:0045944 positive regulation of transcription by RNA polymerase II 8.14% (7/86) 5.48 0.0 0.0
GO:0009891 positive regulation of biosynthetic process 9.3% (8/86) 4.6 0.0 0.0
GO:0010557 positive regulation of macromolecule biosynthetic process 9.3% (8/86) 4.6 0.0 0.0
GO:0031328 positive regulation of cellular biosynthetic process 9.3% (8/86) 4.6 0.0 0.0
GO:0003712 transcription coregulator activity 8.14% (7/86) 5.06 0.0 0.0
GO:0031325 positive regulation of cellular metabolic process 9.3% (8/86) 4.29 0.0 0.0
GO:0045893 positive regulation of DNA-templated transcription 8.14% (7/86) 4.7 0.0 0.0
GO:1902680 positive regulation of RNA biosynthetic process 8.14% (7/86) 4.7 0.0 0.0
GO:0009893 positive regulation of metabolic process 9.3% (8/86) 4.07 0.0 1e-06
GO:0048522 positive regulation of cellular process 9.3% (8/86) 4.11 0.0 1e-06
GO:0051173 positive regulation of nitrogen compound metabolic process 9.3% (8/86) 4.09 0.0 1e-06
GO:0010604 positive regulation of macromolecule metabolic process 9.3% (8/86) 4.07 0.0 1e-06
GO:0051254 positive regulation of RNA metabolic process 8.14% (7/86) 4.44 0.0 1e-06
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 8.14% (7/86) 4.37 0.0 1e-06
GO:0048518 positive regulation of biological process 9.3% (8/86) 3.85 0.0 2e-06
GO:0006357 regulation of transcription by RNA polymerase II 9.3% (8/86) 3.81 0.0 2e-06
GO:0010468 regulation of gene expression 16.28% (14/86) 2.4 0.0 7e-06
GO:0010556 regulation of macromolecule biosynthetic process 16.28% (14/86) 2.39 0.0 8e-06
GO:0009889 regulation of biosynthetic process 16.28% (14/86) 2.36 1e-06 9e-06
GO:0031326 regulation of cellular biosynthetic process 16.28% (14/86) 2.36 1e-06 9e-06
GO:0060255 regulation of macromolecule metabolic process 16.28% (14/86) 2.26 1e-06 1.9e-05
GO:0031323 regulation of cellular metabolic process 16.28% (14/86) 2.25 1e-06 2e-05
GO:0019222 regulation of metabolic process 16.28% (14/86) 2.2 2e-06 2.7e-05
GO:0050794 regulation of cellular process 18.6% (16/86) 1.88 6e-06 7.8e-05
GO:0050789 regulation of biological process 18.6% (16/86) 1.81 1.1e-05 0.000129
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.49% (3/86) 6.23 1e-05 0.00013
GO:0140110 transcription regulator activity 10.47% (9/86) 2.71 1e-05 0.000131
GO:0016071 mRNA metabolic process 6.98% (6/86) 3.6 1.2e-05 0.000137
GO:0006402 mRNA catabolic process 4.65% (4/86) 4.67 2.1e-05 0.000237
GO:0065007 biological regulation 18.6% (16/86) 1.71 2.5e-05 0.000278
GO:0046700 heterocycle catabolic process 5.81% (5/86) 3.73 4.2e-05 0.000427
GO:0044270 cellular nitrogen compound catabolic process 5.81% (5/86) 3.73 4.2e-05 0.000427
GO:0006401 RNA catabolic process 4.65% (4/86) 4.43 4e-05 0.000429
GO:0019439 aromatic compound catabolic process 5.81% (5/86) 3.56 7.4e-05 0.000722
GO:1901361 organic cyclic compound catabolic process 5.81% (5/86) 3.53 8e-05 0.000762
GO:0018026 peptidyl-lysine monomethylation 2.33% (2/86) 6.98 0.000122 0.001136
GO:0006355 regulation of DNA-templated transcription 10.47% (9/86) 2.16 0.000188 0.001577
GO:2001141 regulation of RNA biosynthetic process 10.47% (9/86) 2.16 0.000188 0.001577
GO:1904680 peptide transmembrane transporter activity 3.49% (3/86) 4.81 0.00018 0.001587
GO:0035673 oligopeptide transmembrane transporter activity 3.49% (3/86) 4.81 0.00018 0.001587
GO:0051171 regulation of nitrogen compound metabolic process 11.63% (10/86) 2.01 0.000195 0.001604
GO:0080090 regulation of primary metabolic process 11.63% (10/86) 1.99 0.000211 0.00169
GO:0051252 regulation of RNA metabolic process 10.47% (9/86) 2.09 0.000271 0.002125
GO:0000956 nuclear-transcribed mRNA catabolic process 3.49% (3/86) 4.57 0.000295 0.002267
GO:0140513 nuclear protein-containing complex 8.14% (7/86) 2.45 0.000315 0.002364
GO:0018205 peptidyl-lysine modification 3.49% (3/86) 4.5 0.000341 0.002511
GO:0019219 regulation of nucleobase-containing compound metabolic process 10.47% (9/86) 2.03 0.000361 0.0026
GO:0042887 amide transmembrane transporter activity 3.49% (3/86) 4.38 0.000435 0.003013
GO:0034655 nucleobase-containing compound catabolic process 4.65% (4/86) 3.53 0.00043 0.003034
GO:0010629 negative regulation of gene expression 4.65% (4/86) 3.5 0.000462 0.003075
GO:0017025 TBP-class protein binding 2.33% (2/86) 6.02 0.000457 0.003099
GO:0140296 general transcription initiation factor binding 2.33% (2/86) 5.64 0.00077 0.005037
GO:0018193 peptidyl-amino acid modification 4.65% (4/86) 3.29 0.000792 0.005083
GO:0010558 negative regulation of macromolecule biosynthetic process 4.65% (4/86) 3.14 0.001176 0.007412
GO:0016279 protein-lysine N-methyltransferase activity 2.33% (2/86) 5.29 0.001238 0.007533
GO:0016278 lysine N-methyltransferase activity 2.33% (2/86) 5.29 0.001238 0.007533
GO:0009890 negative regulation of biosynthetic process 4.65% (4/86) 3.09 0.001326 0.007671
GO:0031327 negative regulation of cellular biosynthetic process 4.65% (4/86) 3.1 0.001305 0.007678
GO:0033971 hydroxyisourate hydrolase activity 1.16% (1/86) 9.6 0.001287 0.007702
GO:0018022 peptidyl-lysine methylation 2.33% (2/86) 5.16 0.001489 0.008475
GO:0008134 transcription factor binding 2.33% (2/86) 5.09 0.001626 0.009112
GO:0010605 negative regulation of macromolecule metabolic process 4.65% (4/86) 2.96 0.001819 0.010032
GO:0009892 negative regulation of metabolic process 4.65% (4/86) 2.93 0.001966 0.010358
GO:0044248 cellular catabolic process 5.81% (5/86) 2.51 0.00195 0.010432
GO:0031324 negative regulation of cellular metabolic process 4.65% (4/86) 2.94 0.001927 0.010467
GO:0097177 mitochondrial ribosome binding 1.16% (1/86) 8.77 0.002287 0.011874
GO:0005761 mitochondrial ribosome 1.16% (1/86) 8.52 0.002716 0.013695
GO:0000313 organellar ribosome 1.16% (1/86) 8.52 0.002716 0.013695
GO:0070274 RES complex 1.16% (1/86) 8.45 0.002858 0.014211
GO:0051997 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity 1.16% (1/86) 8.31 0.003144 0.015413
GO:0000012 single strand break repair 1.16% (1/86) 8.19 0.003429 0.016582
GO:0044877 protein-containing complex binding 4.65% (4/86) 2.67 0.003801 0.01813
GO:0043022 ribosome binding 2.33% (2/86) 4.41 0.004093 0.019263
GO:0048523 negative regulation of cellular process 4.65% (4/86) 2.56 0.004916 0.022247
GO:0008213 protein alkylation 2.33% (2/86) 4.28 0.004875 0.022351
GO:0006479 protein methylation 2.33% (2/86) 4.28 0.004875 0.022351
GO:0016070 RNA metabolic process 8.14% (7/86) 1.75 0.005009 0.022381
GO:0046415 urate metabolic process 1.16% (1/86) 7.6 0.005139 0.022397
GO:0019628 urate catabolic process 1.16% (1/86) 7.6 0.005139 0.022397
GO:0048519 negative regulation of biological process 4.65% (4/86) 2.53 0.00523 0.022515
GO:0008170 N-methyltransferase activity 2.33% (2/86) 4.11 0.006153 0.02617
GO:0032991 protein-containing complex 11.63% (10/86) 1.33 0.006436 0.027045
GO:0008276 protein methyltransferase activity 2.33% (2/86) 4.03 0.006813 0.027964
GO:0043021 ribonucleoprotein complex binding 2.33% (2/86) 4.03 0.006813 0.027964
GO:0009057 macromolecule catabolic process 4.65% (4/86) 2.36 0.007873 0.031946
GO:0140603 obsolete ATP hydrolysis activity 1.16% (1/86) 6.73 0.009402 0.037715
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides 1.16% (1/86) 6.4 0.01181 0.04684
GO:0000398 mRNA splicing, via spliceosome 2.33% (2/86) 3.56 0.012747 0.049998
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (86) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms