Coexpression cluster: Cluster_778 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032922 circadian regulation of gene expression 3.37% (3/89) 8.5 0.0 1.2e-05
GO:0009648 photoperiodism 3.37% (3/89) 8.5 0.0 1.2e-05
GO:0043153 entrainment of circadian clock by photoperiod 3.37% (3/89) 8.5 0.0 1.2e-05
GO:0009649 entrainment of circadian clock 3.37% (3/89) 8.31 0.0 1.4e-05
GO:0000150 DNA strand exchange activity 3.37% (3/89) 7.88 0.0 1.9e-05
GO:0004363 glutathione synthase activity 3.37% (3/89) 7.9 0.0 2.2e-05
GO:1904091 non-ribosomal peptide synthetase activity 3.37% (3/89) 7.9 0.0 2.2e-05
GO:0003904 deoxyribodipyrimidine photo-lyase activity 3.37% (3/89) 7.41 1e-06 2.3e-05
GO:0003913 DNA photolyase activity 3.37% (3/89) 7.41 1e-06 2.3e-05
GO:0019184 nonribosomal peptide biosynthetic process 3.37% (3/89) 7.35 1e-06 2.3e-05
GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity 3.37% (3/89) 7.32 1e-06 2.3e-05
GO:0005575 cellular_component 42.7% (38/89) 1.09 1e-06 2.3e-05
GO:0000730 DNA recombinase assembly 3.37% (3/89) 7.59 1e-06 2.5e-05
GO:0090735 DNA repair complex assembly 3.37% (3/89) 7.59 1e-06 2.5e-05
GO:0048511 rhythmic process 3.37% (3/89) 7.5 1e-06 2.5e-05
GO:0007623 circadian rhythm 3.37% (3/89) 7.5 1e-06 2.5e-05
GO:0042148 DNA strand invasion 3.37% (3/89) 7.69 0.0 2.5e-05
GO:0000794 condensed nuclear chromosome 3.37% (3/89) 7.42 1e-06 2.5e-05
GO:0006750 glutathione biosynthetic process 3.37% (3/89) 7.42 1e-06 2.5e-05
GO:0042752 regulation of circadian rhythm 3.37% (3/89) 7.25 1e-06 2.5e-05
GO:0009882 blue light photoreceptor activity 2.25% (2/89) 10.14 1e-06 2.9e-05
GO:0009881 photoreceptor activity 2.25% (2/89) 9.72 3e-06 4.6e-05
GO:0004470 malic enzyme activity 3.37% (3/89) 6.89 3e-06 4.7e-05
GO:0006312 mitotic recombination 3.37% (3/89) 6.9 2e-06 4.8e-05
GO:0000228 nuclear chromosome 3.37% (3/89) 6.65 4e-06 6.1e-05
GO:0065004 protein-DNA complex assembly 4.49% (4/89) 5.27 4e-06 6.3e-05
GO:0009785 blue light signaling pathway 2.25% (2/89) 9.4 4e-06 6.5e-05
GO:0030522 intracellular receptor signaling pathway 2.25% (2/89) 9.4 4e-06 6.5e-05
GO:0071483 cellular response to blue light 2.25% (2/89) 9.4 4e-06 6.5e-05
GO:0006108 malate metabolic process 3.37% (3/89) 6.45 6e-06 8.6e-05
GO:0000793 condensed chromosome 3.37% (3/89) 6.46 6e-06 8.7e-05
GO:0016615 malate dehydrogenase activity 3.37% (3/89) 6.41 7e-06 9.1e-05
GO:0051287 NAD binding 4.49% (4/89) 5.0 9e-06 0.00011
GO:0009416 response to light stimulus 4.49% (4/89) 4.93 1e-05 0.000129
GO:0110165 cellular anatomical entity 37.08% (33/89) 1.07 1.1e-05 0.000133
GO:0003677 DNA binding 13.48% (12/89) 2.19 1.2e-05 0.000145
GO:0009314 response to radiation 4.49% (4/89) 4.82 1.4e-05 0.000161
GO:0140664 ATP-dependent DNA damage sensor activity 3.37% (3/89) 6.03 1.5e-05 0.000162
GO:0140612 DNA damage sensor activity 3.37% (3/89) 6.03 1.5e-05 0.000162
GO:0043295 glutathione binding 3.37% (3/89) 5.95 1.8e-05 0.000187
GO:0019005 SCF ubiquitin ligase complex 3.37% (3/89) 5.92 1.9e-05 0.000193
GO:0009637 response to blue light 2.25% (2/89) 8.23 2.1e-05 0.000216
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process 3.37% (3/89) 5.77 2.5e-05 0.000249
GO:0070192 chromosome organization involved in meiotic cell cycle 3.37% (3/89) 5.76 2.6e-05 0.000253
GO:0140299 small molecule sensor activity 3.37% (3/89) 5.62 3.5e-05 0.000325
GO:0140527 reciprocal homologous recombination 3.37% (3/89) 5.51 4.3e-05 0.000381
GO:0007131 reciprocal meiotic recombination 3.37% (3/89) 5.51 4.3e-05 0.000381
GO:0035825 homologous recombination 3.37% (3/89) 5.51 4.3e-05 0.000381
GO:0016881 acid-amino acid ligase activity 3.37% (3/89) 5.37 5.8e-05 0.0005
GO:0071482 cellular response to light stimulus 2.25% (2/89) 7.38 7e-05 0.000591
GO:0140097 catalytic activity, acting on DNA 6.74% (6/89) 3.11 7.5e-05 0.00062
GO:0140640 catalytic activity, acting on a nucleic acid 10.11% (9/89) 2.33 8.2e-05 0.000666
GO:0009739 response to gibberellin 2.25% (2/89) 7.18 9.2e-05 0.000736
GO:0009723 response to ethylene 2.25% (2/89) 7.12 0.0001 0.000758
GO:0071478 cellular response to radiation 2.25% (2/89) 7.12 0.0001 0.000758
GO:0071949 FAD binding 3.37% (3/89) 5.12 9.7e-05 0.000765
GO:0005694 chromosome 3.37% (3/89) 5.03 0.000115 0.000856
GO:0071214 cellular response to abiotic stimulus 2.25% (2/89) 6.9 0.000136 0.000976
GO:0104004 cellular response to environmental stimulus 2.25% (2/89) 6.9 0.000136 0.000976
GO:0009628 response to abiotic stimulus 4.49% (4/89) 3.87 0.000176 0.001247
GO:0043648 dicarboxylic acid metabolic process 3.37% (3/89) 4.51 0.000337 0.002339
GO:0071824 protein-DNA complex organization 4.49% (4/89) 3.53 0.000431 0.002948
GO:0006749 glutathione metabolic process 3.37% (3/89) 4.32 0.000488 0.003286
GO:0031461 cullin-RING ubiquitin ligase complex 3.37% (3/89) 4.31 0.000498 0.003299
GO:0003690 double-stranded DNA binding 5.62% (5/89) 2.93 0.000532 0.003468
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 4.49% (4/89) 3.41 0.000582 0.003737
GO:0005737 cytoplasm 11.24% (10/89) 1.8 0.000601 0.003801
GO:0033993 response to lipid 2.25% (2/89) 5.8 0.000618 0.003853
GO:0003676 nucleic acid binding 16.85% (15/89) 1.36 0.000672 0.004132
GO:0006511 ubiquitin-dependent protein catabolic process 4.49% (4/89) 3.31 0.000764 0.00463
GO:0022607 cellular component assembly 5.62% (5/89) 2.8 0.000798 0.004765
GO:0003697 single-stranded DNA binding 3.37% (3/89) 4.06 0.000828 0.004811
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 4.49% (4/89) 3.28 0.00082 0.004826
GO:0016830 carbon-carbon lyase activity 3.37% (3/89) 4.03 0.000878 0.004964
GO:1903046 meiotic cell cycle process 3.37% (3/89) 4.03 0.00087 0.004985
GO:0016879 ligase activity, forming carbon-nitrogen bonds 3.37% (3/89) 4.0 0.000923 0.005085
GO:0016251 RNA polymerase II general transcription initiation factor activity 2.25% (2/89) 5.51 0.00092 0.005135
GO:0019941 modification-dependent protein catabolic process 4.49% (4/89) 3.17 0.001084 0.005894
GO:0006090 pyruvate metabolic process 3.37% (3/89) 3.9 0.001127 0.006047
GO:0043632 modification-dependent macromolecule catabolic process 4.49% (4/89) 3.11 0.001262 0.006687
GO:0140223 general transcription initiation factor activity 2.25% (2/89) 5.27 0.001288 0.006743
GO:0097159 organic cyclic compound binding 26.97% (24/89) 0.91 0.001379 0.007131
GO:0065003 protein-containing complex assembly 4.49% (4/89) 3.05 0.001447 0.007392
GO:0050660 flavin adenine dinucleotide binding 3.37% (3/89) 3.68 0.001753 0.00885
GO:0000166 nucleotide binding 16.85% (15/89) 1.21 0.001842 0.008975
GO:1901265 nucleoside phosphate binding 16.85% (15/89) 1.21 0.001842 0.008975
GO:0000151 ubiquitin ligase complex 3.37% (3/89) 3.66 0.00182 0.009078
GO:0043226 organelle 17.98% (16/89) 1.14 0.002145 0.01022
GO:0009507 chloroplast 4.49% (4/89) 2.89 0.002178 0.010261
GO:0043229 intracellular organelle 17.98% (16/89) 1.14 0.002143 0.010326
GO:0009536 plastid 4.49% (4/89) 2.85 0.002401 0.011064
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 3.37% (3/89) 3.51 0.002437 0.011112
GO:1901363 heterocyclic compound binding 16.85% (15/89) 1.17 0.002395 0.011161
GO:0051603 proteolysis involved in protein catabolic process 4.49% (4/89) 2.83 0.002563 0.01144
GO:0036094 small molecule binding 16.85% (15/89) 1.16 0.002554 0.011522
GO:0016874 ligase activity 4.49% (4/89) 2.78 0.002895 0.012785
GO:0010498 proteasomal protein catabolic process 3.37% (3/89) 3.37 0.003184 0.013917
GO:0022414 reproductive process 3.37% (3/89) 3.34 0.003355 0.014514
GO:0004399 histidinol dehydrogenase activity 1.12% (1/89) 8.2 0.003401 0.014566
GO:0006310 DNA recombination 3.37% (3/89) 3.31 0.003594 0.015239
GO:0009019 obsolete tRNA (guanine-N1-)-methyltransferase activity 1.12% (1/89) 7.97 0.003991 0.016591
GO:0002939 tRNA N1-guanine methylation 1.12% (1/89) 7.97 0.003991 0.016591
GO:0030163 protein catabolic process 3.37% (3/89) 3.25 0.004041 0.016634
GO:0043043 peptide biosynthetic process 3.37% (3/89) 3.24 0.004131 0.016841
GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity 1.12% (1/89) 7.63 0.005023 0.019906
GO:0004477 methenyltetrahydrofolate cyclohydrolase activity 1.12% (1/89) 7.63 0.005023 0.019906
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity 1.12% (1/89) 7.63 0.005023 0.019906
GO:0051716 cellular response to stimulus 5.62% (5/89) 2.17 0.005239 0.020568
GO:0008094 ATP-dependent activity, acting on DNA 3.37% (3/89) 3.03 0.006117 0.023793
GO:0010468 regulation of gene expression 8.99% (8/89) 1.54 0.006312 0.024328
GO:0010556 regulation of macromolecule biosynthetic process 8.99% (8/89) 1.53 0.006564 0.025073
GO:0006518 peptide metabolic process 3.37% (3/89) 2.98 0.006729 0.025473
GO:0008150 biological_process 40.45% (36/89) 0.54 0.006824 0.025606
GO:0046695 SLIK (SAGA-like) complex 1.12% (1/89) 7.14 0.007085 0.02635
GO:0009889 regulation of biosynthetic process 8.99% (8/89) 1.51 0.007301 0.02646
GO:0031326 regulation of cellular biosynthetic process 8.99% (8/89) 1.51 0.007271 0.026575
GO:0046510 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity 1.12% (1/89) 7.11 0.007232 0.026663
GO:0046506 sulfolipid biosynthetic process 1.12% (1/89) 6.91 0.00826 0.029432
GO:0046505 sulfolipid metabolic process 1.12% (1/89) 6.91 0.00826 0.029432
GO:0005829 cytosol 5.62% (5/89) 1.99 0.008916 0.030003
GO:0051276 chromosome organization 3.37% (3/89) 2.86 0.008504 0.030049
GO:1901700 response to oxygen-containing compound 2.25% (2/89) 3.83 0.008872 0.030094
GO:0140535 intracellular protein-containing complex 4.49% (4/89) 2.33 0.008589 0.030095
GO:0043604 amide biosynthetic process 3.37% (3/89) 2.84 0.008703 0.030247
GO:0043933 protein-containing complex organization 4.49% (4/89) 2.32 0.00878 0.030266
GO:0009057 macromolecule catabolic process 4.49% (4/89) 2.31 0.008863 0.030306
GO:1990234 transferase complex 4.49% (4/89) 2.28 0.009679 0.032315
GO:0050896 response to stimulus 10.11% (9/89) 1.32 0.010042 0.032502
GO:0006082 organic acid metabolic process 5.62% (5/89) 1.94 0.010031 0.032716
GO:0019752 carboxylic acid metabolic process 5.62% (5/89) 1.95 0.009885 0.032745
GO:0043436 oxoacid metabolic process 5.62% (5/89) 1.94 0.009999 0.032865
GO:0004818 glutamate-tRNA ligase activity 1.12% (1/89) 6.47 0.011194 0.035158
GO:0006424 glutamyl-tRNA aminoacylation 1.12% (1/89) 6.47 0.011194 0.035158
GO:0001046 core promoter sequence-specific DNA binding 1.12% (1/89) 6.49 0.011048 0.03522
GO:0031323 regulation of cellular metabolic process 8.99% (8/89) 1.39 0.011381 0.035222
GO:0060255 regulation of macromolecule metabolic process 8.99% (8/89) 1.4 0.011004 0.035345
GO:0055038 recycling endosome membrane 1.12% (1/89) 6.45 0.011341 0.035356
GO:0016829 lyase activity 3.37% (3/89) 2.68 0.011824 0.036328
GO:0009725 response to hormone 2.25% (2/89) 3.6 0.012023 0.036414
GO:0008152 metabolic process 25.84% (23/89) 0.69 0.012019 0.036662
GO:0019238 cyclohydrolase activity 1.12% (1/89) 6.25 0.013097 0.039383
GO:0032588 trans-Golgi network membrane 1.12% (1/89) 6.21 0.013389 0.039978
GO:0019222 regulation of metabolic process 8.99% (8/89) 1.35 0.013553 0.040186
GO:0035999 tetrahydrofolate interconversion 1.12% (1/89) 6.11 0.014412 0.042434
GO:0009719 response to endogenous stimulus 2.25% (2/89) 3.44 0.014931 0.04366
GO:0006547 histidine metabolic process 1.12% (1/89) 6.02 0.015287 0.044094
GO:0000105 histidine biosynthetic process 1.12% (1/89) 6.02 0.015287 0.044094
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.12% (1/89) 5.97 0.01587 0.045162
GO:1902494 catalytic complex 5.62% (5/89) 1.78 0.015814 0.045304
GO:0009640 photomorphogenesis 1.12% (1/89) 5.94 0.016162 0.045685
GO:0032787 monocarboxylic acid metabolic process 3.37% (3/89) 2.5 0.01635 0.045911
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (89) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms