Coexpression cluster: Cluster_66 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008092 cytoskeletal protein binding 13.37% (25/187) 4.48 0.0 0.0
GO:0051015 actin filament binding 8.02% (15/187) 5.46 0.0 0.0
GO:0003779 actin binding 8.02% (15/187) 5.21 0.0 0.0
GO:0008352 katanin complex 3.21% (6/187) 7.88 0.0 0.0
GO:0051261 protein depolymerization 3.74% (7/187) 6.39 0.0 0.0
GO:0007019 microtubule depolymerization 3.21% (6/187) 7.26 0.0 0.0
GO:0044877 protein-containing complex binding 8.02% (15/187) 3.45 0.0 0.0
GO:0031109 microtubule polymerization or depolymerization 3.21% (6/187) 6.88 0.0 0.0
GO:0007010 cytoskeleton organization 5.88% (11/187) 4.11 0.0 0.0
GO:0000226 microtubule cytoskeleton organization 5.35% (10/187) 4.37 0.0 0.0
GO:0005875 microtubule associated complex 3.74% (7/187) 5.66 0.0 0.0
GO:0007017 microtubule-based process 5.88% (11/187) 3.91 0.0 0.0
GO:0032984 protein-containing complex disassembly 3.74% (7/187) 5.39 0.0 0.0
GO:0008017 microtubule binding 5.35% (10/187) 4.0 0.0 0.0
GO:1990937 xylan acetylation 2.14% (4/187) 8.1 0.0 0.0
GO:0071840 cellular component organization or biogenesis 12.83% (24/187) 2.12 0.0 0.0
GO:0015631 tubulin binding 5.35% (10/187) 3.91 0.0 0.0
GO:0005515 protein binding 20.32% (38/187) 1.44 0.0 0.0
GO:0022411 cellular component disassembly 3.74% (7/187) 4.64 0.0 0.0
GO:0045492 xylan biosynthetic process 2.67% (5/187) 5.83 0.0 1e-06
GO:0009834 plant-type secondary cell wall biogenesis 2.67% (5/187) 5.76 0.0 1e-06
GO:0000271 polysaccharide biosynthetic process 4.28% (8/187) 3.96 0.0 1e-06
GO:0005794 Golgi apparatus 4.81% (9/187) 3.52 0.0 2e-06
GO:0005464 UDP-xylose transmembrane transporter activity 1.6% (3/187) 7.99 0.0 4e-06
GO:0045491 xylan metabolic process 2.67% (5/187) 5.16 0.0 6e-06
GO:0097435 supramolecular fiber organization 3.74% (7/187) 3.98 0.0 7e-06
GO:0006996 organelle organization 7.49% (14/187) 2.41 1e-06 9e-06
GO:0016043 cellular component organization 10.16% (19/187) 1.94 1e-06 1.1e-05
GO:0016051 carbohydrate biosynthetic process 4.28% (8/187) 3.48 1e-06 1.2e-05
GO:0070592 cell wall polysaccharide biosynthetic process 2.67% (5/187) 4.83 1e-06 1.6e-05
GO:0005976 polysaccharide metabolic process 4.28% (8/187) 3.37 1e-06 1.9e-05
GO:0010411 xyloglucan metabolic process 2.14% (4/187) 5.55 2e-06 2.6e-05
GO:0010410 hemicellulose metabolic process 2.67% (5/187) 4.57 3e-06 3.4e-05
GO:0010383 cell wall polysaccharide metabolic process 2.67% (5/187) 4.37 5e-06 6.5e-05
GO:0044036 cell wall macromolecule metabolic process 2.67% (5/187) 4.14 1.2e-05 0.00014
GO:0009832 plant-type cell wall biogenesis 2.67% (5/187) 3.98 1.9e-05 0.000226
GO:0044042 glucan metabolic process 3.21% (6/187) 3.44 2.3e-05 0.00026
GO:0071554 cell wall organization or biogenesis 3.21% (6/187) 3.39 2.8e-05 0.000309
GO:0005874 microtubule 2.67% (5/187) 3.84 3e-05 0.00032
GO:0005975 carbohydrate metabolic process 6.42% (12/187) 2.1 3e-05 0.000321
GO:0071669 plant-type cell wall organization or biogenesis 2.67% (5/187) 3.77 3.8e-05 0.000395
GO:0042546 cell wall biogenesis 2.67% (5/187) 3.74 4.2e-05 0.000426
GO:0099081 supramolecular polymer 2.67% (5/187) 3.72 4.6e-05 0.000433
GO:0099512 supramolecular fiber 2.67% (5/187) 3.72 4.6e-05 0.000433
GO:0099513 polymeric cytoskeletal fiber 2.67% (5/187) 3.72 4.6e-05 0.000448
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 1.6% (3/187) 5.43 5.1e-05 0.000473
GO:0043933 protein-containing complex organization 4.81% (9/187) 2.42 5.9e-05 0.00053
GO:0003878 ATP citrate synthase activity 1.07% (2/187) 7.36 7.1e-05 0.000624
GO:0072583 clathrin-dependent endocytosis 1.6% (3/187) 5.21 8.1e-05 0.000699
GO:0005338 nucleotide-sugar transmembrane transporter activity 1.6% (3/187) 5.13 9.7e-05 0.000817
GO:0006898 receptor-mediated endocytosis 1.6% (3/187) 4.82 0.000181 0.001504
GO:0030276 clathrin binding 1.6% (3/187) 4.77 0.000199 0.001618
GO:0061024 membrane organization 2.67% (5/187) 3.23 0.000223 0.00178
GO:0044085 cellular component biogenesis 2.67% (5/187) 3.11 0.000325 0.002546
GO:0048040 UDP-glucuronate decarboxylase activity 1.07% (2/187) 6.13 0.000396 0.00299
GO:0042732 D-xylose metabolic process 1.07% (2/187) 6.13 0.000396 0.00299
GO:0099080 supramolecular complex 2.67% (5/187) 2.98 0.00048 0.003561
GO:0032561 guanyl ribonucleotide binding 2.67% (5/187) 2.89 0.000645 0.004626
GO:0005525 GTP binding 2.67% (5/187) 2.89 0.000645 0.004626
GO:0007098 centrosome cycle 1.07% (2/187) 5.7 0.000716 0.00505
GO:0019001 guanyl nucleotide binding 2.67% (5/187) 2.84 0.000737 0.005112
GO:0016407 acetyltransferase activity 2.14% (4/187) 3.32 0.000759 0.00518
GO:0004707 MAP kinase activity 1.07% (2/187) 5.55 0.000873 0.00586
GO:1901505 carbohydrate derivative transmembrane transporter activity 1.6% (3/187) 4.0 0.00094 0.006117
GO:0031023 microtubule organizing center organization 1.07% (2/187) 5.5 0.000937 0.006193
GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer 1.07% (2/187) 5.47 0.000977 0.006259
GO:0005905 clathrin-coated pit 1.07% (2/187) 5.44 0.001017 0.00642
GO:0070403 NAD+ binding 1.07% (2/187) 5.34 0.001172 0.007182
GO:0005545 1-phosphatidylinositol binding 1.07% (2/187) 5.31 0.001216 0.007242
GO:0048268 clathrin coat assembly 1.07% (2/187) 5.31 0.001216 0.007242
GO:0015932 nucleobase-containing compound transmembrane transporter activity 1.6% (3/187) 3.89 0.00117 0.00728
GO:0051643 endoplasmic reticulum localization 1.07% (2/187) 5.26 0.001306 0.007366
GO:0061817 endoplasmic reticulum-plasma membrane tethering 1.07% (2/187) 5.26 0.001306 0.007366
GO:0030136 clathrin-coated vesicle 1.07% (2/187) 5.27 0.001275 0.007391
GO:0032050 clathrin heavy chain binding 1.07% (2/187) 5.28 0.00126 0.007405
GO:0006897 endocytosis 1.6% (3/187) 3.74 0.001584 0.008816
GO:0015297 antiporter activity 2.14% (4/187) 2.99 0.001733 0.009518
GO:0000149 SNARE binding 1.6% (3/187) 3.66 0.001852 0.010042
GO:0098590 plasma membrane region 1.07% (2/187) 4.97 0.001932 0.010216
GO:0019321 pentose metabolic process 1.07% (2/187) 4.97 0.001932 0.010216
GO:0016050 vesicle organization 1.6% (3/187) 3.57 0.002191 0.011444
GO:0051287 NAD binding 1.6% (3/187) 3.52 0.002435 0.012563
GO:0009059 macromolecule biosynthetic process 4.28% (8/187) 1.76 0.002807 0.014135
GO:0006085 acetyl-CoA biosynthetic process 1.07% (2/187) 4.7 0.002805 0.014296
GO:0035384 thioester biosynthetic process 1.07% (2/187) 4.64 0.003007 0.014792
GO:0071616 acyl-CoA biosynthetic process 1.07% (2/187) 4.64 0.003007 0.014792
GO:0098657 import into cell 1.6% (3/187) 3.36 0.003314 0.016113
GO:0006900 vesicle budding from membrane 1.07% (2/187) 4.43 0.004012 0.019285
GO:0003924 GTPase activity 2.14% (4/187) 2.62 0.004307 0.019803
GO:0070161 anchoring junction 1.6% (3/187) 3.21 0.004376 0.019904
GO:0009506 plasmodesma 1.6% (3/187) 3.23 0.004249 0.019971
GO:0005911 cell-cell junction 1.6% (3/187) 3.22 0.004306 0.020018
GO:0015291 secondary active transmembrane transporter activity 2.14% (4/187) 2.63 0.004228 0.020094
GO:0030054 cell junction 1.6% (3/187) 3.2 0.004482 0.020167
GO:0090158 endoplasmic reticulum membrane organization 1.07% (2/187) 4.31 0.004747 0.02049
GO:0005488 binding 31.02% (58/187) 0.46 0.004733 0.020641
GO:0016192 vesicle-mediated transport 3.21% (6/187) 1.97 0.004698 0.020699
GO:0006084 acetyl-CoA metabolic process 1.07% (2/187) 4.29 0.004861 0.020769
GO:0030135 coated vesicle 1.07% (2/187) 4.31 0.004691 0.020886
GO:0034030 ribonucleoside bisphosphate biosynthetic process 1.07% (2/187) 4.08 0.006388 0.026491
GO:0034033 purine nucleoside bisphosphate biosynthetic process 1.07% (2/187) 4.08 0.006388 0.026491
GO:0033866 nucleoside bisphosphate biosynthetic process 1.07% (2/187) 4.08 0.006388 0.026491
GO:0051013 microtubule severing 0.53% (1/187) 7.06 0.007442 0.030562
GO:0005813 centrosome 1.07% (2/187) 3.95 0.007675 0.031218
GO:0003979 UDP-glucose 6-dehydrogenase activity 0.53% (1/187) 6.9 0.008368 0.032475
GO:0140056 organelle localization by membrane tethering 1.07% (2/187) 3.88 0.008359 0.032741
GO:0022406 membrane docking 1.07% (2/187) 3.88 0.008359 0.032741
GO:0006099 tricarboxylic acid cycle 1.07% (2/187) 3.88 0.008359 0.032741
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 1.6% (3/187) 2.88 0.008267 0.033306
GO:0015786 UDP-glucose transmembrane transport 0.53% (1/187) 6.79 0.008985 0.034553
GO:0005789 endoplasmic reticulum membrane 1.6% (3/187) 2.81 0.009347 0.035619
GO:0000987 cis-regulatory region sequence-specific DNA binding 1.6% (3/187) 2.79 0.009793 0.036337
GO:0008514 organic anion transmembrane transporter activity 1.6% (3/187) 2.79 0.009774 0.036588
GO:0005815 microtubule organizing center 1.07% (2/187) 3.76 0.009766 0.036886
GO:0051225 spindle assembly 1.07% (2/187) 3.7 0.010568 0.038871
GO:0035383 thioester metabolic process 1.07% (2/187) 3.62 0.011865 0.042897
GO:0006637 acyl-CoA metabolic process 1.07% (2/187) 3.62 0.011865 0.042897
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific 1.6% (3/187) 2.65 0.012706 0.045548
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 0.53% (1/187) 6.22 0.013294 0.047256
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (187) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms