Coexpression cluster: Cluster_614 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005737 cytoplasm 16.81% (20/119) 2.38 0.0 1e-06
GO:0004306 ethanolamine-phosphate cytidylyltransferase activity 2.52% (3/119) 9.03 0.0 4e-06
GO:0008676 3-deoxy-8-phosphooctulonate synthase activity 2.52% (3/119) 9.13 0.0 5e-06
GO:0003993 acid phosphatase activity 3.36% (4/119) 6.05 0.0 5.2e-05
GO:0006646 phosphatidylethanolamine biosynthetic process 2.52% (3/119) 7.03 2e-06 0.000132
GO:0046337 phosphatidylethanolamine metabolic process 2.52% (3/119) 7.03 2e-06 0.000132
GO:0070567 cytidylyltransferase activity 2.52% (3/119) 6.44 6e-06 0.000382
GO:0009450 gamma-aminobutyric acid catabolic process 1.68% (2/119) 8.78 1e-05 0.000412
GO:0004777 succinate-semialdehyde dehydrogenase (NAD+) activity 1.68% (2/119) 8.84 9e-06 0.000418
GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity 1.68% (2/119) 8.84 9e-06 0.000418
GO:0044238 primary metabolic process 29.41% (35/119) 1.03 1.9e-05 0.000737
GO:0110165 cellular anatomical entity 33.61% (40/119) 0.93 2.1e-05 0.000743
GO:0046364 monosaccharide biosynthetic process 2.52% (3/119) 5.66 3.2e-05 0.001034
GO:0003727 single-stranded RNA binding 2.52% (3/119) 5.41 5.4e-05 0.001515
GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters 3.36% (4/119) 4.33 5.3e-05 0.00159
GO:0006807 nitrogen compound metabolic process 25.21% (30/119) 1.06 6.2e-05 0.001627
GO:0005575 cellular_component 35.29% (42/119) 0.82 7.3e-05 0.001698
GO:0071704 organic substance metabolic process 29.41% (35/119) 0.94 6.9e-05 0.00171
GO:0008152 metabolic process 30.25% (36/119) 0.92 8e-05 0.001758
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 3.36% (4/119) 4.12 9.1e-05 0.001918
GO:0051131 chaperone-mediated protein complex assembly 1.68% (2/119) 7.11 0.000101 0.002025
GO:0046474 glycerophospholipid biosynthetic process 3.36% (4/119) 4.04 0.000115 0.002094
GO:0009448 gamma-aminobutyric acid metabolic process 1.68% (2/119) 7.04 0.000113 0.002151
GO:0043171 peptide catabolic process 1.68% (2/119) 6.6 0.000206 0.003453
GO:0045017 glycerolipid biosynthetic process 3.36% (4/119) 3.82 0.000202 0.003532
GO:0008654 phospholipid biosynthetic process 3.36% (4/119) 3.66 0.000308 0.004792
GO:0046872 metal ion binding 10.08% (12/119) 1.72 0.000303 0.004902
GO:1901565 organonitrogen compound catabolic process 5.04% (6/119) 2.71 0.00034 0.005093
GO:0004521 RNA endonuclease activity 3.36% (4/119) 3.59 0.000371 0.005194
GO:0043169 cation binding 10.08% (12/119) 1.68 0.000385 0.005211
GO:0006281 DNA repair 5.04% (6/119) 2.69 0.000368 0.005335
GO:0003824 catalytic activity 31.09% (37/119) 0.78 0.000419 0.005339
GO:0043170 macromolecule metabolic process 21.85% (26/119) 1.0 0.000407 0.005339
GO:0006650 glycerophospholipid metabolic process 3.36% (4/119) 3.47 0.000509 0.006289
GO:0044237 cellular metabolic process 22.69% (27/119) 0.95 0.000545 0.006545
GO:0006974 DNA damage response 5.04% (6/119) 2.56 0.000596 0.006767
GO:0009987 cellular process 31.09% (37/119) 0.76 0.000595 0.006939
GO:0033554 cellular response to stress 5.88% (7/119) 2.28 0.000652 0.00721
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 1.68% (2/119) 5.74 0.000674 0.007262
GO:0051716 cellular response to stimulus 5.88% (7/119) 2.24 0.000773 0.008113
GO:0070006 metalloaminopeptidase activity 1.68% (2/119) 5.61 0.000807 0.00827
GO:0046486 glycerolipid metabolic process 3.36% (4/119) 3.26 0.000864 0.008441
GO:0005730 nucleolus 3.36% (4/119) 3.27 0.000848 0.008477
GO:0004540 RNA nuclease activity 3.36% (4/119) 3.2 0.001006 0.009394
GO:0004519 endonuclease activity 3.36% (4/119) 3.21 0.00099 0.009447
GO:0019104 DNA N-glycosylase activity 1.68% (2/119) 5.2 0.001404 0.012819
GO:0004177 aminopeptidase activity 1.68% (2/119) 5.14 0.001528 0.01365
GO:0016788 hydrolase activity, acting on ester bonds 6.72% (8/119) 1.88 0.0016 0.014004
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 1.68% (2/119) 5.07 0.001689 0.014187
GO:0016779 nucleotidyltransferase activity 3.36% (4/119) 3.0 0.001668 0.014301
GO:0000413 protein peptidyl-prolyl isomerization 1.68% (2/119) 5.0 0.001858 0.015008
GO:0004176 ATP-dependent peptidase activity 1.68% (2/119) 5.01 0.001835 0.015113
GO:0008235 metalloexopeptidase activity 1.68% (2/119) 4.96 0.001963 0.015559
GO:0043167 ion binding 19.33% (23/119) 0.91 0.002248 0.016856
GO:0016787 hydrolase activity 12.61% (15/119) 1.2 0.002247 0.017157
GO:0005996 monosaccharide metabolic process 2.52% (3/119) 3.53 0.00237 0.017162
GO:0006284 base-excision repair 1.68% (2/119) 4.87 0.00222 0.017265
GO:0006644 phospholipid metabolic process 3.36% (4/119) 2.87 0.002352 0.017334
GO:0034080 CENP-A containing chromatin assembly 0.84% (1/119) 8.6 0.002571 0.017999
GO:0031055 chromatin remodeling at centromere 0.84% (1/119) 8.6 0.002571 0.017999
GO:0008270 zinc ion binding 5.04% (6/119) 2.13 0.002677 0.018434
GO:0005759 mitochondrial matrix 1.68% (2/119) 4.72 0.002721 0.018436
GO:0018208 peptidyl-proline modification 1.68% (2/119) 4.67 0.00289 0.019267
GO:0003999 adenine phosphoribosyltransferase activity 0.84% (1/119) 7.98 0.003953 0.025543
GO:0030623 U5 snRNA binding 0.84% (1/119) 7.98 0.003953 0.025543
GO:0007005 mitochondrion organization 1.68% (2/119) 4.39 0.004219 0.026849
GO:1901564 organonitrogen compound metabolic process 15.97% (19/119) 0.95 0.004306 0.02699
GO:1990052 ER to chloroplast lipid transport 0.84% (1/119) 7.66 0.004939 0.027658
GO:0034196 acylglycerol transport 0.84% (1/119) 7.66 0.004939 0.027658
GO:1901965 endoplasmic reticulum to chloroplast transport 0.84% (1/119) 7.66 0.004939 0.027658
GO:0003723 RNA binding 6.72% (8/119) 1.61 0.005009 0.027683
GO:0003684 damaged DNA binding 1.68% (2/119) 4.34 0.004548 0.028093
GO:0070013 intracellular organelle lumen 1.68% (2/119) 4.29 0.004853 0.028307
GO:0043233 organelle lumen 1.68% (2/119) 4.29 0.004853 0.028307
GO:0031974 membrane-enclosed lumen 1.68% (2/119) 4.29 0.004853 0.028307
GO:0004518 nuclease activity 3.36% (4/119) 2.59 0.004675 0.028456
GO:0106130 purine phosphoribosyltransferase activity 0.84% (1/119) 7.55 0.005333 0.02909
GO:0016791 phosphatase activity 3.36% (4/119) 2.52 0.005507 0.029655
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 2.52% (3/119) 3.07 0.005692 0.030262
GO:0051267 CP2 mannose-ethanolamine phosphotransferase activity 0.84% (1/119) 7.4 0.005924 0.030717
GO:0042277 peptide binding 1.68% (2/119) 4.15 0.005859 0.030762
GO:0090407 organophosphate biosynthetic process 3.36% (4/119) 2.46 0.006273 0.032128
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.68% (2/119) 4.07 0.00651 0.03294
GO:0008150 biological_process 38.66% (46/119) 0.47 0.006759 0.033395
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 1.68% (2/119) 4.02 0.006932 0.033464
GO:0006335 DNA replication-dependent chromatin assembly 0.84% (1/119) 7.21 0.006711 0.033556
GO:0008773 [protein-PII] uridylyltransferase activity 0.84% (1/119) 7.17 0.006908 0.033736
GO:0007165 signal transduction 5.04% (6/119) 1.82 0.007509 0.035837
GO:0106035 protein maturation by [4Fe-4S] cluster transfer 0.84% (1/119) 7.02 0.007694 0.03631
GO:0090304 nucleic acid metabolic process 9.24% (11/119) 1.21 0.008343 0.038934
GO:0070300 phosphatidic acid binding 0.84% (1/119) 6.84 0.008676 0.040045
GO:0016859 cis-trans isomerase activity 1.68% (2/119) 3.8 0.009271 0.041871
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds 1.68% (2/119) 3.8 0.009271 0.041871
GO:0033218 amide binding 1.68% (2/119) 3.79 0.009468 0.042303
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.68% (2/119) 3.77 0.009716 0.042955
GO:0004084 branched-chain-amino-acid transaminase activity 0.84% (1/119) 6.66 0.009854 0.04311
GO:0071007 U2-type catalytic step 2 spliceosome 0.84% (1/119) 6.57 0.010442 0.044299
GO:0016036 cellular response to phosphate starvation 0.84% (1/119) 6.6 0.010246 0.044364
GO:0019538 protein metabolic process 12.61% (15/119) 0.96 0.010352 0.044365
GO:0140640 catalytic activity, acting on a nucleic acid 5.88% (7/119) 1.54 0.010702 0.04495
GO:0016051 carbohydrate biosynthetic process 2.52% (3/119) 2.71 0.011172 0.046459
GO:0009063 amino acid catabolic process 1.68% (2/119) 3.6 0.012077 0.049248
GO:0016772 transferase activity, transferring phosphorus-containing groups 9.24% (11/119) 1.13 0.012065 0.049677
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (119) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms