Coexpression cluster: Cluster_402 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 10.34% (9/87) 10.34 0.0 0.0
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 10.34% (9/87) 10.34 0.0 0.0
GO:0008172 S-methyltransferase activity 10.34% (9/87) 9.64 0.0 0.0
GO:0008652 amino acid biosynthetic process 14.94% (13/87) 5.75 0.0 0.0
GO:0009086 methionine biosynthetic process 9.2% (8/87) 8.43 0.0 0.0
GO:1901605 alpha-amino acid metabolic process 16.09% (14/87) 5.3 0.0 0.0
GO:0006555 methionine metabolic process 9.2% (8/87) 8.32 0.0 0.0
GO:0006520 amino acid metabolic process 18.39% (16/87) 4.58 0.0 0.0
GO:0006082 organic acid metabolic process 20.69% (18/87) 3.82 0.0 0.0
GO:1901607 alpha-amino acid biosynthetic process 12.64% (11/87) 5.62 0.0 0.0
GO:0043436 oxoacid metabolic process 20.69% (18/87) 3.82 0.0 0.0
GO:0019752 carboxylic acid metabolic process 20.69% (18/87) 3.83 0.0 0.0
GO:0000097 sulfur amino acid biosynthetic process 9.2% (8/87) 7.32 0.0 0.0
GO:0044281 small molecule metabolic process 24.14% (21/87) 3.34 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 14.94% (13/87) 4.84 0.0 0.0
GO:0016053 organic acid biosynthetic process 14.94% (13/87) 4.84 0.0 0.0
GO:0000096 sulfur amino acid metabolic process 9.2% (8/87) 7.19 0.0 0.0
GO:0009067 aspartate family amino acid biosynthetic process 9.2% (8/87) 6.88 0.0 0.0
GO:0009066 aspartate family amino acid metabolic process 9.2% (8/87) 6.52 0.0 0.0
GO:0044283 small molecule biosynthetic process 14.94% (13/87) 4.28 0.0 0.0
GO:0044272 sulfur compound biosynthetic process 9.2% (8/87) 5.81 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 16.09% (14/87) 3.7 0.0 0.0
GO:0043169 cation binding 20.69% (18/87) 2.72 0.0 0.0
GO:0009069 serine family amino acid metabolic process 6.9% (6/87) 6.23 0.0 0.0
GO:0008270 zinc ion binding 13.79% (12/87) 3.58 0.0 0.0
GO:0006790 sulfur compound metabolic process 9.2% (8/87) 4.73 0.0 0.0
GO:0008168 methyltransferase activity 10.34% (9/87) 4.15 0.0 0.0
GO:2000762 regulation of phenylpropanoid metabolic process 4.6% (4/87) 7.9 0.0 0.0
GO:0043455 regulation of secondary metabolic process 4.6% (4/87) 7.79 0.0 0.0
GO:0016741 transferase activity, transferring one-carbon groups 10.34% (9/87) 4.09 0.0 0.0
GO:0016594 glycine binding 3.45% (3/87) 9.95 0.0 0.0
GO:0004375 glycine dehydrogenase (decarboxylating) activity 3.45% (3/87) 9.88 0.0 0.0
GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 3.45% (3/87) 9.88 0.0 0.0
GO:0019464 glycine decarboxylation via glycine cleavage system 3.45% (3/87) 9.29 0.0 0.0
GO:0005960 glycine cleavage complex 3.45% (3/87) 9.29 0.0 0.0
GO:0006546 glycine catabolic process 3.45% (3/87) 9.21 0.0 0.0
GO:0043167 ion binding 32.18% (28/87) 1.64 0.0 0.0
GO:0006564 L-serine biosynthetic process 3.45% (3/87) 9.09 0.0 0.0
GO:0046872 metal ion binding 17.24% (15/87) 2.5 0.0 0.0
GO:0016597 amino acid binding 3.45% (3/87) 8.09 0.0 1e-06
GO:0008150 biological_process 54.02% (47/87) 0.96 0.0 1e-06
GO:0009071 serine family amino acid catabolic process 3.45% (3/87) 7.93 0.0 2e-06
GO:0046914 transition metal ion binding 13.79% (12/87) 2.71 0.0 2e-06
GO:0044249 cellular biosynthetic process 16.09% (14/87) 2.42 0.0 2e-06
GO:0009987 cellular process 41.38% (36/87) 1.17 1e-06 3e-06
GO:0004024 alcohol dehydrogenase activity, zinc-dependent 3.45% (3/87) 7.51 1e-06 4e-06
GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity 3.45% (3/87) 7.51 1e-06 4e-06
GO:0046294 formaldehyde catabolic process 3.45% (3/87) 7.42 1e-06 4e-06
GO:0110095 cellular detoxification of aldehyde 3.45% (3/87) 7.42 1e-06 4e-06
GO:0046292 formaldehyde metabolic process 3.45% (3/87) 7.42 1e-06 4e-06
GO:1901576 organic substance biosynthetic process 16.09% (14/87) 2.3 1e-06 4e-06
GO:0044282 small molecule catabolic process 6.9% (6/87) 4.22 1e-06 5e-06
GO:0016592 mediator complex 4.6% (4/87) 5.73 1e-06 5e-06
GO:0004022 alcohol dehydrogenase (NAD+) activity 3.45% (3/87) 7.23 1e-06 5e-06
GO:0018455 alcohol dehydrogenase [NAD(P)+] activity 3.45% (3/87) 7.23 1e-06 5e-06
GO:0044237 cellular metabolic process 31.03% (27/87) 1.4 1e-06 6e-06
GO:0009058 biosynthetic process 16.09% (14/87) 2.22 2e-06 7e-06
GO:1901564 organonitrogen compound metabolic process 25.29% (22/87) 1.61 2e-06 7e-06
GO:0006544 glycine metabolic process 3.45% (3/87) 6.96 2e-06 9e-06
GO:1990748 cellular detoxification 3.45% (3/87) 6.67 4e-06 1.6e-05
GO:0046185 aldehyde catabolic process 3.45% (3/87) 6.58 5e-06 1.9e-05
GO:0006563 L-serine metabolic process 3.45% (3/87) 6.29 9e-06 3.3e-05
GO:0098754 detoxification 3.45% (3/87) 6.28 9e-06 3.4e-05
GO:0015144 carbohydrate transmembrane transporter activity 4.6% (4/87) 4.95 1e-05 3.6e-05
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 3.45% (3/87) 6.01 1.6e-05 5.7e-05
GO:0031406 carboxylic acid binding 3.45% (3/87) 5.85 2.2e-05 7.8e-05
GO:0043177 organic acid binding 3.45% (3/87) 5.85 2.2e-05 7.8e-05
GO:0048046 apoplast 3.45% (3/87) 5.84 2.2e-05 7.8e-05
GO:0009070 serine family amino acid biosynthetic process 3.45% (3/87) 5.47 4.7e-05 0.000162
GO:0006081 cellular aldehyde metabolic process 3.45% (3/87) 5.29 6.9e-05 0.000235
GO:0071704 organic substance metabolic process 31.03% (27/87) 1.02 0.000168 0.000565
GO:1901606 alpha-amino acid catabolic process 3.45% (3/87) 4.74 0.00021 0.000699
GO:1990204 oxidoreductase complex 3.45% (3/87) 4.69 0.000233 0.000764
GO:0030170 pyridoxal phosphate binding 3.45% (3/87) 4.63 0.000263 0.000828
GO:0070279 vitamin B6 binding 3.45% (3/87) 4.63 0.000263 0.000828
GO:0009063 amino acid catabolic process 3.45% (3/87) 4.64 0.000257 0.00083
GO:0009941 chloroplast envelope 3.45% (3/87) 4.61 0.000273 0.000835
GO:0009526 plastid envelope 3.45% (3/87) 4.61 0.000273 0.000835
GO:0044248 cellular catabolic process 6.9% (6/87) 2.76 0.000283 0.000855
GO:0008152 metabolic process 31.03% (27/87) 0.95 0.000373 0.001115
GO:0019842 vitamin binding 3.45% (3/87) 4.31 0.000501 0.001479
GO:0006807 nitrogen compound metabolic process 25.29% (22/87) 1.07 0.000532 0.001551
GO:0031975 envelope 3.45% (3/87) 4.25 0.000557 0.001585
GO:0031967 organelle envelope 3.45% (3/87) 4.25 0.000557 0.001585
GO:0000287 magnesium ion binding 3.45% (3/87) 4.21 0.000611 0.001717
GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity 1.15% (1/87) 10.17 0.000868 0.002413
GO:0005576 extracellular region 3.45% (3/87) 3.9 0.001121 0.003079
GO:0016054 organic acid catabolic process 3.45% (3/87) 3.69 0.001708 0.004588
GO:0046395 carboxylic acid catabolic process 3.45% (3/87) 3.69 0.001708 0.004588
GO:0044419 biological process involved in interspecies interaction between organisms 8.05% (7/87) 2.01 0.001822 0.004682
GO:0009607 response to biotic stimulus 8.05% (7/87) 2.01 0.001842 0.004684
GO:0043207 response to external biotic stimulus 8.05% (7/87) 2.01 0.001813 0.004711
GO:0051707 response to other organism 8.05% (7/87) 2.01 0.001812 0.00476
GO:0098542 defense response to other organism 8.05% (7/87) 2.01 0.001812 0.00476
GO:0016311 dephosphorylation 3.45% (3/87) 3.6 0.00202 0.005082
GO:0006952 defense response 8.05% (7/87) 1.94 0.00245 0.006098
GO:0009605 response to external stimulus 8.05% (7/87) 1.92 0.002597 0.006398
GO:1901575 organic substance catabolic process 6.9% (6/87) 2.0 0.004041 0.009856
GO:0003674 molecular_function 49.43% (43/87) 0.48 0.004864 0.011743
GO:0044238 primary metabolic process 25.29% (22/87) 0.81 0.005154 0.012195
GO:0009056 catabolic process 6.9% (6/87) 1.93 0.005132 0.012266
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 3.45% (3/87) 3.03 0.00612 0.014339
GO:0005452 solute:inorganic anion antiporter activity 1.15% (1/87) 7.29 0.006351 0.014736
GO:0016740 transferase activity 16.09% (14/87) 1.05 0.006927 0.015919
GO:0005488 binding 34.48% (30/87) 0.61 0.007522 0.017122
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 3.45% (3/87) 2.9 0.007876 0.017759
GO:0055085 transmembrane transport 6.9% (6/87) 1.77 0.008698 0.019247
GO:0070181 small ribosomal subunit rRNA binding 1.15% (1/87) 6.82 0.008793 0.019281
GO:0022857 transmembrane transporter activity 8.05% (7/87) 1.6 0.008633 0.019284
GO:0140513 nuclear protein-containing complex 5.75% (5/87) 1.95 0.009928 0.021571
GO:0003824 catalytic activity 28.74% (25/87) 0.67 0.010085 0.021715
GO:0016491 oxidoreductase activity 8.05% (7/87) 1.53 0.011112 0.023502
GO:0005215 transporter activity 8.05% (7/87) 1.53 0.011025 0.023526
GO:0043168 anion binding 14.94% (13/87) 1.01 0.011529 0.02417
GO:1901363 heterocyclic compound binding 14.94% (13/87) 1.0 0.012421 0.025814
GO:0036094 small molecule binding 14.94% (13/87) 0.99 0.013079 0.026947
GO:0035999 tetrahydrofolate interconversion 1.15% (1/87) 6.14 0.01409 0.028782
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.15% (1/87) 6.0 0.015517 0.031428
GO:0009507 chloroplast 3.45% (3/87) 2.51 0.01613 0.032395
GO:0009536 plastid 3.45% (3/87) 2.47 0.017318 0.034492
GO:0032991 protein-containing complex 10.34% (9/87) 1.16 0.0194 0.038319
GO:0051879 Hsp90 protein binding 1.15% (1/87) 5.61 0.02021 0.039592
GO:0006730 one-carbon metabolic process 1.15% (1/87) 5.54 0.021203 0.041199
GO:0046653 tetrahydrofolate metabolic process 1.15% (1/87) 5.51 0.02177 0.041959
GO:0031011 Ino80 complex 1.15% (1/87) 5.27 0.025587 0.048923
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (87) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms