Coexpression cluster: Cluster_839 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) 5.71% (4/70) 10.02 0.0 0.0
GO:0050660 flavin adenine dinucleotide binding 11.43% (8/70) 5.44 0.0 0.0
GO:0071949 FAD binding 8.57% (6/70) 6.46 0.0 0.0
GO:0009773 photosynthetic electron transport in photosystem I 5.71% (4/70) 8.82 0.0 0.0
GO:0009767 photosynthetic electron transport chain 5.71% (4/70) 7.49 0.0 0.0
GO:0046624 sphingolipid transporter activity 4.29% (3/70) 9.07 0.0 0.0
GO:0035627 ceramide transport 4.29% (3/70) 9.07 0.0 0.0
GO:0046625 sphingolipid binding 4.29% (3/70) 9.07 0.0 0.0
GO:0097001 ceramide binding 4.29% (3/70) 9.07 0.0 0.0
GO:0120016 sphingolipid transfer activity 4.29% (3/70) 9.07 0.0 0.0
GO:0120017 ceramide transfer activity 4.29% (3/70) 9.07 0.0 0.0
GO:1902387 ceramide 1-phosphate binding 4.29% (3/70) 9.07 0.0 0.0
GO:1902388 ceramide 1-phosphate transfer activity 4.29% (3/70) 9.07 0.0 0.0
GO:0120009 intermembrane lipid transfer 4.29% (3/70) 8.9 0.0 1e-06
GO:0055035 plastid thylakoid membrane 7.14% (5/70) 5.53 0.0 1e-06
GO:0009535 chloroplast thylakoid membrane 7.14% (5/70) 5.53 0.0 1e-06
GO:0034357 photosynthetic membrane 7.14% (5/70) 5.41 0.0 2e-06
GO:0042651 thylakoid membrane 7.14% (5/70) 5.41 0.0 2e-06
GO:0003904 deoxyribodipyrimidine photo-lyase activity 4.29% (3/70) 7.76 0.0 5e-06
GO:0003913 DNA photolyase activity 4.29% (3/70) 7.76 0.0 5e-06
GO:0120014 phospholipid transfer activity 4.29% (3/70) 7.76 0.0 5e-06
GO:0120013 lipid transfer activity 4.29% (3/70) 7.69 0.0 5e-06
GO:0042170 plastid membrane 7.14% (5/70) 4.92 1e-06 8e-06
GO:0031968 organelle outer membrane 7.14% (5/70) 4.8 1e-06 1.2e-05
GO:0022900 electron transport chain 5.71% (4/70) 5.68 1e-06 1.3e-05
GO:0005548 phospholipid transporter activity 4.29% (3/70) 7.17 1e-06 1.3e-05
GO:0019867 outer membrane 7.14% (5/70) 4.73 1e-06 1.3e-05
GO:0042886 amide transport 4.29% (3/70) 6.61 4e-06 3.8e-05
GO:0009648 photoperiodism 2.86% (2/70) 8.26 2.1e-05 0.000158
GO:0032922 circadian regulation of gene expression 2.86% (2/70) 8.26 2.1e-05 0.000158
GO:0043153 entrainment of circadian clock by photoperiod 2.86% (2/70) 8.26 2.1e-05 0.000158
GO:0009649 entrainment of circadian clock 2.86% (2/70) 8.07 2.7e-05 0.0002
GO:0048511 rhythmic process 2.86% (2/70) 7.26 8.2e-05 0.00058
GO:0007623 circadian rhythm 2.86% (2/70) 7.26 8.2e-05 0.00058
GO:0033218 amide binding 4.29% (3/70) 5.14 9.3e-05 0.000633
GO:0042752 regulation of circadian rhythm 2.86% (2/70) 7.01 0.000116 0.000772
GO:0098588 bounding membrane of organelle 7.14% (5/70) 3.39 0.000121 0.000781
GO:0005319 lipid transporter activity 4.29% (3/70) 4.9 0.00015 0.000943
GO:0006091 generation of precursor metabolites and energy 5.71% (4/70) 3.9 0.00016 0.00098
GO:0006869 lipid transport 4.29% (3/70) 4.72 0.000215 0.001284
GO:0016830 carbon-carbon lyase activity 4.29% (3/70) 4.37 0.000436 0.00254
GO:0005543 phospholipid binding 4.29% (3/70) 4.21 0.000605 0.003441
GO:0031090 organelle membrane 7.14% (5/70) 2.81 0.000766 0.004258
GO:0048578 positive regulation of long-day photoperiodism, flowering 1.43% (1/70) 10.07 0.000932 0.00506
GO:0003677 DNA binding 11.43% (8/70) 1.96 0.001051 0.005583
GO:0061024 membrane organization 4.29% (3/70) 3.91 0.001107 0.005751
GO:0048582 positive regulation of post-embryonic development 1.43% (1/70) 9.61 0.001281 0.006512
GO:0010468 regulation of gene expression 11.43% (8/70) 1.89 0.001408 0.007012
GO:0010556 regulation of macromolecule biosynthetic process 11.43% (8/70) 1.88 0.00147 0.007168
GO:0009889 regulation of biosynthetic process 11.43% (8/70) 1.85 0.00165 0.007732
GO:0031326 regulation of cellular biosynthetic process 11.43% (8/70) 1.85 0.001642 0.007851
GO:0043168 anion binding 18.57% (13/70) 1.33 0.00172 0.007905
GO:0031323 regulation of cellular metabolic process 11.43% (8/70) 1.74 0.002682 0.011444
GO:0051240 positive regulation of multicellular organismal process 1.43% (1/70) 8.54 0.002676 0.011628
GO:0051094 positive regulation of developmental process 1.43% (1/70) 8.54 0.002676 0.011628
GO:0060255 regulation of macromolecule metabolic process 11.43% (8/70) 1.75 0.002584 0.011653
GO:0008289 lipid binding 4.29% (3/70) 3.39 0.003033 0.012082
GO:0010346 shoot axis formation 1.43% (1/70) 8.37 0.003024 0.012251
GO:0010223 secondary shoot formation 1.43% (1/70) 8.37 0.003024 0.012251
GO:1905393 plant organ formation 1.43% (1/70) 8.37 0.003024 0.012251
GO:0019222 regulation of metabolic process 11.43% (8/70) 1.69 0.003251 0.012736
GO:0048586 regulation of long-day photoperiodism, flowering 1.43% (1/70) 8.16 0.003489 0.013449
GO:0048646 anatomical structure formation involved in morphogenesis 1.43% (1/70) 8.02 0.003837 0.014556
GO:0001763 morphogenesis of a branching structure 1.43% (1/70) 7.98 0.003953 0.014762
GO:1901601 strigolactone biosynthetic process 1.43% (1/70) 7.78 0.004533 0.016415
GO:1901600 strigolactone metabolic process 1.43% (1/70) 7.78 0.004533 0.016415
GO:0009416 response to light stimulus 2.86% (2/70) 4.28 0.004907 0.017503
GO:1901336 lactone biosynthetic process 1.43% (1/70) 7.54 0.005345 0.018784
GO:0016106 sesquiterpenoid biosynthetic process 1.43% (1/70) 7.51 0.00546 0.018914
GO:0043565 sequence-specific DNA binding 5.71% (4/70) 2.5 0.005609 0.019149
GO:0009314 response to radiation 2.86% (2/70) 4.16 0.005706 0.019208
GO:0006355 regulation of DNA-templated transcription 8.57% (6/70) 1.88 0.005942 0.019453
GO:2001141 regulation of RNA biosynthetic process 8.57% (6/70) 1.88 0.005942 0.019453
GO:0016829 lyase activity 4.29% (3/70) 3.03 0.006134 0.019811
GO:0006714 sesquiterpenoid metabolic process 1.43% (1/70) 7.26 0.006503 0.020722
GO:0006290 pyrimidine dimer repair 1.43% (1/70) 7.09 0.007313 0.022697
GO:0000719 photoreactive repair 1.43% (1/70) 7.09 0.007313 0.022697
GO:2000028 regulation of photoperiodism, flowering 1.43% (1/70) 7.05 0.007544 0.022822
GO:0051252 regulation of RNA metabolic process 8.57% (6/70) 1.8 0.007517 0.023034
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.57% (6/70) 1.75 0.009029 0.026976
GO:1901334 lactone metabolic process 1.43% (1/70) 6.68 0.009738 0.028384
GO:2000243 positive regulation of reproductive process 1.43% (1/70) 6.69 0.009623 0.028394
GO:0043167 ion binding 20.0% (14/70) 0.96 0.011173 0.032173
GO:0008131 primary amine oxidase activity 1.43% (1/70) 5.99 0.015605 0.044401
GO:0051171 regulation of nitrogen compound metabolic process 8.57% (6/70) 1.57 0.015882 0.044656
GO:0080090 regulation of primary metabolic process 8.57% (6/70) 1.55 0.01656 0.046022
GO:0140097 catalytic activity, acting on DNA 4.29% (3/70) 2.46 0.017567 0.048258
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 1.43% (1/70) 5.8 0.017782 0.048295
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (70) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms