Coexpression cluster: Cluster_874 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005669 transcription factor TFIID complex 5.41% (4/74) 6.91 0.0 1.8e-05
GO:0009583 detection of light stimulus 2.7% (2/74) 9.18 6e-06 0.000563
GO:0090575 RNA polymerase II transcription regulator complex 5.41% (4/74) 5.33 3e-06 0.000694
GO:0009584 detection of visible light 2.7% (2/74) 9.23 5e-06 0.000697
GO:0009582 detection of abiotic stimulus 2.7% (2/74) 8.1 2.5e-05 0.001452
GO:0009581 detection of external stimulus 2.7% (2/74) 8.1 2.5e-05 0.001452
GO:0051606 detection of stimulus 2.7% (2/74) 8.1 2.5e-05 0.001452
GO:0031968 organelle outer membrane 5.41% (4/74) 4.39 4.3e-05 0.002159
GO:0140096 catalytic activity, acting on a protein 18.92% (14/74) 1.75 6e-05 0.002183
GO:0005667 transcription regulator complex 5.41% (4/74) 4.31 5.5e-05 0.00219
GO:0019867 outer membrane 5.41% (4/74) 4.32 5.2e-05 0.002315
GO:0098588 bounding membrane of organelle 6.76% (5/74) 3.31 0.000157 0.003693
GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity 2.7% (2/74) 6.92 0.000132 0.003759
GO:0004575 sucrose alpha-glucosidase activity 2.7% (2/74) 6.95 0.000126 0.003869
GO:0005987 sucrose catabolic process 2.7% (2/74) 6.95 0.000126 0.003869
GO:0004564 beta-fructofuranosidase activity 2.7% (2/74) 6.8 0.000157 0.003904
GO:0090599 alpha-glucosidase activity 2.7% (2/74) 6.81 0.000154 0.004107
GO:0006465 signal peptide processing 2.7% (2/74) 6.59 0.00021 0.004645
GO:0010027 thylakoid membrane organization 2.7% (2/74) 6.44 0.000256 0.004649
GO:0009668 plastid membrane organization 2.7% (2/74) 6.44 0.000256 0.004649
GO:0046352 disaccharide catabolic process 2.7% (2/74) 6.47 0.000246 0.004899
GO:0140103 catalytic activity, acting on a glycoprotein 2.7% (2/74) 6.5 0.000235 0.004934
GO:0009313 oligosaccharide catabolic process 2.7% (2/74) 6.25 0.000335 0.005815
GO:0042147 retrograde transport, endosome to Golgi 2.7% (2/74) 5.73 0.000677 0.010804
GO:0005741 mitochondrial outer membrane 2.7% (2/74) 5.75 0.000659 0.010964
GO:0005575 cellular_component 36.49% (27/74) 0.87 0.000734 0.01126
GO:0016482 cytosolic transport 2.7% (2/74) 5.52 0.000904 0.013355
GO:0005985 sucrose metabolic process 2.7% (2/74) 5.45 0.001002 0.01379
GO:0031090 organelle membrane 6.76% (5/74) 2.73 0.000986 0.014053
GO:0050794 regulation of cellular process 14.86% (11/74) 1.56 0.001174 0.01562
GO:1901575 organic substance catabolic process 8.11% (6/74) 2.23 0.00179 0.022322
GO:0050789 regulation of biological process 14.86% (11/74) 1.49 0.001738 0.022372
GO:0016485 protein processing 2.7% (2/74) 4.98 0.001893 0.022892
GO:0009056 catabolic process 8.11% (6/74) 2.16 0.002295 0.026931
GO:0008670 2,4-dienoyl-CoA reductase (NADPH) activity 1.35% (1/74) 8.34 0.003074 0.029916
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity 1.35% (1/74) 8.34 0.003074 0.029916
GO:0030291 protein serine/threonine kinase inhibitor activity 1.35% (1/74) 8.34 0.003074 0.029916
GO:0051248 negative regulation of protein metabolic process 2.7% (2/74) 4.69 0.002811 0.030309
GO:0008883 glutamyl-tRNA reductase activity 1.35% (1/74) 8.53 0.002706 0.030845
GO:0019538 protein metabolic process 16.22% (12/74) 1.32 0.002809 0.031139
GO:0016192 vesicle-mediated transport 5.41% (4/74) 2.72 0.00328 0.031164
GO:0065007 biological regulation 14.86% (11/74) 1.39 0.003016 0.031664
GO:0005984 disaccharide metabolic process 2.7% (2/74) 4.54 0.003452 0.032034
GO:0004860 protein kinase inhibitor activity 1.35% (1/74) 7.94 0.004056 0.036779
GO:0009311 oligosaccharide metabolic process 2.7% (2/74) 4.38 0.004261 0.036961
GO:0007165 signal transduction 6.76% (5/74) 2.24 0.004246 0.037645
GO:0031966 mitochondrial membrane 2.7% (2/74) 4.33 0.004552 0.038645
GO:0140513 nuclear protein-containing complex 6.76% (5/74) 2.18 0.005067 0.039646
GO:0009416 response to light stimulus 2.7% (2/74) 4.2 0.005466 0.039657
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity 1.35% (1/74) 7.63 0.005037 0.040192
GO:1904030 negative regulation of cyclin-dependent protein kinase activity 1.35% (1/74) 7.63 0.005037 0.040192
GO:0043170 macromolecule metabolic process 21.62% (16/74) 0.99 0.005447 0.040248
GO:0055035 plastid thylakoid membrane 2.7% (2/74) 4.13 0.006002 0.040591
GO:0009535 chloroplast thylakoid membrane 2.7% (2/74) 4.13 0.006002 0.040591
GO:0051604 protein maturation 2.7% (2/74) 4.28 0.004886 0.040614
GO:0016197 endosomal transport 2.7% (2/74) 4.2 0.005419 0.040795
GO:0009314 response to radiation 2.7% (2/74) 4.08 0.006355 0.040899
GO:0018209 peptidyl-serine modification 2.7% (2/74) 4.05 0.006678 0.040994
GO:0018105 peptidyl-serine phosphorylation 2.7% (2/74) 4.05 0.006678 0.040994
GO:0019210 kinase inhibitor activity 1.35% (1/74) 7.13 0.007118 0.041158
GO:0004842 ubiquitin-protein transferase activity 4.05% (3/74) 3.1 0.005366 0.041175
GO:0016755 aminoacyltransferase activity 4.05% (3/74) 3.01 0.006298 0.041193
GO:0019787 ubiquitin-like protein transferase activity 4.05% (3/74) 3.05 0.005911 0.041377
GO:0044238 primary metabolic process 25.68% (19/74) 0.84 0.007514 0.041639
GO:0032991 protein-containing complex 12.16% (9/74) 1.39 0.007109 0.04171
GO:0006807 nitrogen compound metabolic process 22.97% (17/74) 0.93 0.006277 0.041743
GO:0015926 glucosidase activity 2.7% (2/74) 3.93 0.007761 0.041845
GO:0071704 organic substance metabolic process 27.03% (20/74) 0.82 0.006616 0.041899
GO:0006468 protein phosphorylation 9.46% (7/74) 1.62 0.007676 0.041957
GO:0034357 photosynthetic membrane 2.7% (2/74) 4.01 0.007049 0.041976
GO:0042651 thylakoid membrane 2.7% (2/74) 4.01 0.007049 0.041976
GO:0046695 SLIK (SAGA-like) complex 1.35% (1/74) 7.4 0.005894 0.041995
GO:1901564 organonitrogen compound metabolic process 17.57% (13/74) 1.08 0.007493 0.042109
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 2.7% (2/74) 3.97 0.007401 0.042184
GO:0071901 negative regulation of protein serine/threonine kinase activity 1.35% (1/74) 6.92 0.008218 0.043717
GO:0004672 protein kinase activity 9.46% (7/74) 1.57 0.009204 0.045337
GO:0042326 negative regulation of phosphorylation 1.35% (1/74) 6.76 0.009194 0.045857
GO:0006469 negative regulation of protein kinase activity 1.35% (1/74) 6.76 0.009194 0.045857
GO:0033673 negative regulation of kinase activity 1.35% (1/74) 6.76 0.009194 0.045857
GO:0001933 negative regulation of protein phosphorylation 1.35% (1/74) 6.76 0.009194 0.045857
GO:1990414 replication-born double-strand break repair via sister chromatid exchange 1.35% (1/74) 6.72 0.009438 0.045926
GO:0016310 phosphorylation 9.46% (7/74) 1.58 0.008992 0.047208
GO:0005737 cytoplasm 9.46% (7/74) 1.55 0.009866 0.047429
GO:0005524 ATP binding 12.16% (9/74) 1.3 0.010492 0.049836
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (74) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms