Coexpression cluster: Cluster_119 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004385 guanylate kinase activity 4.39% (5/114) 10.23 0.0 0.0
GO:0080162 endoplasmic reticulum to cytosol auxin transport 4.39% (5/114) 8.73 0.0 0.0
GO:0060918 auxin transport 4.39% (5/114) 7.83 0.0 0.0
GO:0009914 hormone transport 4.39% (5/114) 7.83 0.0 0.0
GO:0050145 nucleoside monophosphate kinase activity 4.39% (5/114) 7.28 0.0 0.0
GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity 4.39% (5/114) 6.85 0.0 0.0
GO:0000152 nuclear ubiquitin ligase complex 4.39% (5/114) 6.36 0.0 0.0
GO:0019205 nucleobase-containing compound kinase activity 4.39% (5/114) 6.26 0.0 0.0
GO:0016776 phosphotransferase activity, phosphate group as acceptor 4.39% (5/114) 6.11 0.0 1e-06
GO:0031398 positive regulation of protein ubiquitination 2.63% (3/114) 7.82 0.0 7e-06
GO:1905784 regulation of anaphase-promoting complex-dependent catabolic process 2.63% (3/114) 7.82 0.0 7e-06
GO:1990757 ubiquitin ligase activator activity 2.63% (3/114) 7.82 0.0 7e-06
GO:1904668 positive regulation of ubiquitin protein ligase activity 2.63% (3/114) 7.82 0.0 7e-06
GO:1905786 positive regulation of anaphase-promoting complex-dependent catabolic process 2.63% (3/114) 7.82 0.0 7e-06
GO:1903322 positive regulation of protein modification by small protein conjugation or removal 2.63% (3/114) 7.82 0.0 7e-06
GO:0051443 positive regulation of ubiquitin-protein transferase activity 2.63% (3/114) 7.82 0.0 7e-06
GO:0097027 ubiquitin-protein transferase activator activity 2.63% (3/114) 7.82 0.0 7e-06
GO:0010997 anaphase-promoting complex binding 2.63% (3/114) 7.76 0.0 8e-06
GO:0008146 sulfotransferase activity 3.51% (4/114) 6.35 0.0 8e-06
GO:1904666 regulation of ubiquitin protein ligase activity 2.63% (3/114) 7.63 1e-06 9e-06
GO:0051438 regulation of ubiquitin-protein transferase activity 2.63% (3/114) 7.63 1e-06 9e-06
GO:0010817 regulation of hormone levels 4.39% (5/114) 5.26 0.0 9e-06
GO:0035102 PRC1 complex 1.75% (2/114) 10.78 1e-06 1e-05
GO:0005794 Golgi apparatus 6.14% (7/114) 3.87 1e-06 1e-05
GO:1903320 regulation of protein modification by small protein conjugation or removal 2.63% (3/114) 7.47 1e-06 1.1e-05
GO:0031396 regulation of protein ubiquitination 2.63% (3/114) 7.47 1e-06 1.1e-05
GO:0055106 ubiquitin-protein transferase regulator activity 2.63% (3/114) 7.26 1e-06 1.7e-05
GO:0005247 voltage-gated chloride channel activity 2.63% (3/114) 7.03 2e-06 2.6e-05
GO:1901875 positive regulation of post-translational protein modification 2.63% (3/114) 6.97 2e-06 2.8e-05
GO:0016782 transferase activity, transferring sulphur-containing groups 3.51% (4/114) 5.47 2e-06 3.2e-05
GO:0034647 histone H3K4me/H3K4me2/H3K4me3 demethylase activity 2.63% (3/114) 6.88 3e-06 3.2e-05
GO:0032453 histone H3K4 demethylase activity 2.63% (3/114) 6.8 3e-06 3.7e-05
GO:1901873 regulation of post-translational protein modification 2.63% (3/114) 6.7 4e-06 4.4e-05
GO:0005254 chloride channel activity 2.63% (3/114) 6.66 4e-06 4.5e-05
GO:0055085 transmembrane transport 10.53% (12/114) 2.38 4e-06 4.5e-05
GO:0035098 ESC/E(Z) complex 1.75% (2/114) 9.36 4e-06 4.6e-05
GO:0006821 chloride transport 2.63% (3/114) 6.59 5e-06 4.9e-05
GO:0043085 positive regulation of catalytic activity 3.51% (4/114) 5.07 7e-06 7.3e-05
GO:0051923 sulfation 2.63% (3/114) 6.37 7e-06 7.4e-05
GO:0015108 chloride transmembrane transporter activity 2.63% (3/114) 6.28 9e-06 8.6e-05
GO:0044093 positive regulation of molecular function 3.51% (4/114) 4.97 9e-06 8.9e-05
GO:0031145 anaphase-promoting complex-dependent catabolic process 2.63% (3/114) 6.12 1.3e-05 0.000116
GO:0051347 positive regulation of transferase activity 2.63% (3/114) 6.02 1.5e-05 0.000137
GO:0000151 ubiquitin ligase complex 4.39% (5/114) 4.04 1.6e-05 0.000137
GO:0005680 anaphase-promoting complex 2.63% (3/114) 5.94 1.8e-05 0.000157
GO:0008308 voltage-gated monoatomic anion channel activity 2.63% (3/114) 5.87 2.1e-05 0.000175
GO:0005575 cellular_component 36.84% (42/114) 0.88 2.3e-05 0.000189
GO:0141052 histone H3 demethylase activity 2.63% (3/114) 5.74 2.7e-05 0.000219
GO:0031519 PcG protein complex 1.75% (2/114) 8.01 2.9e-05 0.000231
GO:0005253 monoatomic anion channel activity 2.63% (3/114) 5.7 3e-05 0.000232
GO:0031401 positive regulation of protein modification process 2.63% (3/114) 5.64 3.3e-05 0.000245
GO:0032452 histone demethylase activity 2.63% (3/114) 5.65 3.3e-05 0.000247
GO:0140457 protein demethylase activity 2.63% (3/114) 5.65 3.3e-05 0.000247
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process 2.63% (3/114) 5.59 3.7e-05 0.000261
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process 2.63% (3/114) 5.59 3.7e-05 0.000261
GO:0006820 monoatomic anion transport 2.63% (3/114) 5.54 4.1e-05 0.000285
GO:0008509 monoatomic anion transmembrane transporter activity 2.63% (3/114) 5.45 5e-05 0.000329
GO:1903052 positive regulation of proteolysis involved in protein catabolic process 2.63% (3/114) 5.45 4.9e-05 0.000329
GO:1901800 positive regulation of proteasomal protein catabolic process 2.63% (3/114) 5.45 4.9e-05 0.000329
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process 2.63% (3/114) 5.43 5.2e-05 0.000334
GO:2000058 regulation of ubiquitin-dependent protein catabolic process 2.63% (3/114) 5.35 6.1e-05 0.000387
GO:0045862 positive regulation of proteolysis 2.63% (3/114) 5.3 6.7e-05 0.00042
GO:0061136 regulation of proteasomal protein catabolic process 2.63% (3/114) 5.2 8.3e-05 0.000503
GO:0045732 positive regulation of protein catabolic process 2.63% (3/114) 5.2 8.2e-05 0.000508
GO:0006810 transport 12.28% (14/114) 1.73 8.9e-05 0.000532
GO:1903050 regulation of proteolysis involved in protein catabolic process 2.63% (3/114) 5.13 9.6e-05 0.000562
GO:0015698 inorganic anion transport 2.63% (3/114) 5.12 9.8e-05 0.000568
GO:0065008 regulation of biological quality 4.39% (5/114) 3.46 0.000102 0.000583
GO:0005244 voltage-gated monoatomic ion channel activity 2.63% (3/114) 5.03 0.000118 0.000651
GO:0022832 voltage-gated channel activity 2.63% (3/114) 5.03 0.000118 0.000651
GO:0050790 regulation of catalytic activity 3.51% (4/114) 4.02 0.000119 0.000652
GO:0030162 regulation of proteolysis 2.63% (3/114) 4.99 0.000126 0.000681
GO:0008194 UDP-glycosyltransferase activity 5.26% (6/114) 2.97 0.000131 0.000695
GO:0015103 inorganic anion transmembrane transporter activity 2.63% (3/114) 4.93 0.000143 0.000723
GO:0065009 regulation of molecular function 3.51% (4/114) 3.96 0.00014 0.000725
GO:0051234 establishment of localization 12.28% (14/114) 1.66 0.000142 0.000726
GO:0042176 regulation of protein catabolic process 2.63% (3/114) 4.95 0.000139 0.000727
GO:0032451 demethylase activity 2.63% (3/114) 4.87 0.000162 0.000806
GO:0051179 localization 12.28% (14/114) 1.61 0.000207 0.001005
GO:0044877 protein-containing complex binding 5.26% (6/114) 2.84 0.00021 0.001006
GO:0008047 enzyme activator activity 3.51% (4/114) 3.81 0.000207 0.001016
GO:0016706 2-oxoglutarate-dependent dioxygenase activity 2.63% (3/114) 4.68 0.000237 0.001121
GO:0140677 molecular function activator activity 3.51% (4/114) 3.73 0.000261 0.00122
GO:0016758 hexosyltransferase activity 5.26% (6/114) 2.76 0.00029 0.001339
GO:0051338 regulation of transferase activity 2.63% (3/114) 4.53 0.000324 0.001479
GO:0005975 carbohydrate metabolic process 7.02% (8/114) 2.23 0.000337 0.001518
GO:0009896 positive regulation of catabolic process 2.63% (3/114) 4.5 0.000341 0.00152
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport 1.75% (2/114) 6.08 0.000423 0.001845
GO:0015780 nucleotide-sugar transmembrane transport 1.75% (2/114) 6.08 0.000423 0.001845
GO:0004427 inorganic diphosphate phosphatase activity 1.75% (2/114) 6.07 0.000429 0.001847
GO:0016757 glycosyltransferase activity 6.14% (7/114) 2.37 0.000461 0.001964
GO:0110165 cellular anatomical entity 30.7% (35/114) 0.8 0.000487 0.002054
GO:0031399 regulation of protein modification process 2.63% (3/114) 4.28 0.000534 0.002229
GO:0000785 chromatin 2.63% (3/114) 4.15 0.000691 0.002852
GO:0035097 histone methyltransferase complex 1.75% (2/114) 5.6 0.000821 0.003355
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 1.75% (2/114) 5.56 0.000859 0.003472
GO:0051247 positive regulation of protein metabolic process 2.63% (3/114) 4.02 0.000903 0.003613
GO:0033843 xyloglucan 6-xylosyltransferase activity 0.88% (1/114) 10.04 0.000948 0.003754
GO:0031461 cullin-RING ubiquitin ligase complex 2.63% (3/114) 3.95 0.001022 0.004005
GO:0022836 gated channel activity 2.63% (3/114) 3.87 0.001197 0.004643
GO:0005829 cytosol 6.14% (7/114) 2.11 0.001269 0.004873
GO:0005338 nucleotide-sugar transmembrane transporter activity 1.75% (2/114) 5.26 0.001309 0.004978
GO:0030173 obsolete integral component of Golgi membrane 1.75% (2/114) 5.17 0.001472 0.005491
GO:0009894 regulation of catabolic process 2.63% (3/114) 3.77 0.001464 0.005513
GO:0051213 dioxygenase activity 2.63% (3/114) 3.76 0.0015 0.005542
GO:0140993 histone modifying activity 2.63% (3/114) 3.7 0.001681 0.006155
GO:1901264 carbohydrate derivative transport 1.75% (2/114) 5.02 0.001794 0.006504
GO:0034708 methyltransferase complex 1.75% (2/114) 4.98 0.001893 0.006799
GO:0033290 eukaryotic 48S preinitiation complex 0.88% (1/114) 8.9 0.002085 0.007421
GO:0005216 monoatomic ion channel activity 2.63% (3/114) 3.52 0.002399 0.008385
GO:0030246 carbohydrate binding 3.51% (4/114) 2.86 0.002394 0.008444
GO:0032993 protein-DNA complex 2.63% (3/114) 3.48 0.00261 0.009041
GO:0016740 transferase activity 15.79% (18/114) 1.03 0.002978 0.010225
GO:0070993 translation preinitiation complex 0.88% (1/114) 8.04 0.003787 0.012778
GO:0140535 intracellular protein-containing complex 4.39% (5/114) 2.29 0.003772 0.012837
GO:0006338 chromatin remodeling 2.63% (3/114) 3.21 0.004402 0.014473
GO:1990234 transferase complex 4.39% (5/114) 2.24 0.004372 0.014498
GO:0004352 glutamate dehydrogenase (NAD+) activity 0.88% (1/114) 7.84 0.004354 0.014564
GO:0015267 channel activity 2.63% (3/114) 3.14 0.004947 0.015732
GO:0022803 passive transmembrane transporter activity 2.63% (3/114) 3.14 0.004947 0.015732
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2.63% (3/114) 3.15 0.004886 0.015798
GO:0030234 enzyme regulator activity 3.51% (4/114) 2.57 0.004883 0.015919
GO:0009507 chloroplast 3.51% (4/114) 2.53 0.005286 0.016675
GO:0006325 chromatin organization 2.63% (3/114) 3.08 0.00558 0.01746
GO:0009536 plastid 3.51% (4/114) 2.5 0.005808 0.018027
GO:1901505 carbohydrate derivative transmembrane transporter activity 1.75% (2/114) 4.13 0.006011 0.018509
GO:0098772 molecular function regulator activity 3.51% (4/114) 2.48 0.006098 0.018629
GO:0010498 proteasomal protein catabolic process 2.63% (3/114) 3.01 0.006348 0.019243
GO:0015932 nucleobase-containing compound transmembrane transporter activity 1.75% (2/114) 4.02 0.006965 0.02095
GO:0006114 glycerol biosynthetic process 0.88% (1/114) 7.12 0.007184 0.021116
GO:0043136 glycerol-3-phosphatase activity 0.88% (1/114) 7.12 0.007184 0.021116
GO:0019401 alditol biosynthetic process 0.88% (1/114) 7.12 0.007184 0.021116
GO:0035252 UDP-xylosyltransferase activity 0.88% (1/114) 7.04 0.00756 0.021729
GO:0140513 nuclear protein-containing complex 5.26% (6/114) 1.82 0.007468 0.021788
GO:0006790 sulfur compound metabolic process 2.63% (3/114) 2.92 0.007544 0.021845
GO:0030163 protein catabolic process 2.63% (3/114) 2.89 0.008015 0.022866
GO:0008150 biological_process 38.6% (44/114) 0.47 0.008185 0.02318
GO:0051246 regulation of protein metabolic process 2.63% (3/114) 2.84 0.008887 0.024986
GO:0005850 eukaryotic translation initiation factor 2 complex 0.88% (1/114) 6.69 0.00963 0.02688
GO:0071824 protein-DNA complex organization 2.63% (3/114) 2.76 0.010301 0.028549
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 3.51% (4/114) 2.21 0.011409 0.031395
GO:0000139 Golgi membrane 1.75% (2/114) 3.63 0.011592 0.031673
GO:1901565 organonitrogen compound catabolic process 3.51% (4/114) 2.19 0.011911 0.032317
GO:0004353 glutamate dehydrogenase [NAD(P)+] activity 0.88% (1/114) 6.36 0.01207 0.032521
GO:0065007 biological regulation 11.4% (13/114) 1.0 0.012974 0.034718
GO:0043231 intracellular membrane-bounded organelle 13.16% (15/114) 0.91 0.013699 0.036404
GO:0043227 membrane-bounded organelle 13.16% (15/114) 0.9 0.014581 0.037717
GO:0072319 vesicle uncoating 0.88% (1/114) 6.1 0.014503 0.037767
GO:0072318 clathrin coat disassembly 0.88% (1/114) 6.1 0.014503 0.037767
GO:0006538 glutamate catabolic process 0.88% (1/114) 6.1 0.014503 0.037767
GO:0003674 molecular_function 45.61% (52/114) 0.37 0.015234 0.039145
GO:0006511 ubiquitin-dependent protein catabolic process 2.63% (3/114) 2.53 0.015515 0.039605
GO:0043649 dicarboxylic acid catabolic process 0.88% (1/114) 5.94 0.016185 0.041044
GO:1901702 salt transmembrane transporter activity 2.63% (3/114) 2.49 0.016738 0.04217
GO:0016798 hydrolase activity, acting on glycosyl bonds 3.51% (4/114) 2.0 0.018617 0.046602
GO:0003824 catalytic activity 26.32% (30/114) 0.54 0.01877 0.046684
GO:0000287 magnesium ion binding 1.75% (2/114) 3.23 0.019509 0.048213
GO:0019941 modification-dependent protein catabolic process 2.63% (3/114) 2.4 0.019885 0.048525
GO:0016020 membrane 11.4% (13/114) 0.92 0.019818 0.048666
GO:0043933 protein-containing complex organization 3.51% (4/114) 1.96 0.020141 0.048842
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (114) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms