Coexpression cluster: Cluster_545 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0036080 purine nucleotide-sugar transmembrane transporter activity 5.0% (4/80) 9.63 0.0 0.0
GO:0005457 GDP-fucose transmembrane transporter activity 5.0% (4/80) 9.63 0.0 0.0
GO:0005338 nucleotide-sugar transmembrane transporter activity 5.0% (4/80) 6.77 0.0 5e-06
GO:0003867 4-aminobutyrate transaminase activity 3.75% (3/80) 8.68 0.0 6e-06
GO:0009448 gamma-aminobutyric acid metabolic process 3.75% (3/80) 8.19 0.0 1.1e-05
GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity 3.75% (3/80) 8.1 0.0 1.1e-05
GO:0006768 biotin metabolic process 3.75% (3/80) 7.64 1e-06 1.9e-05
GO:0009102 biotin biosynthetic process 3.75% (3/80) 7.64 1e-06 1.9e-05
GO:0009725 response to hormone 6.25% (5/80) 5.08 0.0 2.1e-05
GO:0009719 response to endogenous stimulus 6.25% (5/80) 4.91 1e-06 2.6e-05
GO:1901505 carbohydrate derivative transmembrane transporter activity 5.0% (4/80) 5.64 1e-06 4.3e-05
GO:0015932 nucleobase-containing compound transmembrane transporter activity 5.0% (4/80) 5.53 2e-06 5.4e-05
GO:0022857 transmembrane transporter activity 13.75% (11/80) 2.37 9e-06 0.000224
GO:0010033 response to organic substance 6.25% (5/80) 4.04 1.5e-05 0.00032
GO:0005215 transporter activity 13.75% (11/80) 2.3 1.4e-05 0.000323
GO:0042364 water-soluble vitamin biosynthetic process 3.75% (3/80) 5.61 3.5e-05 0.000705
GO:0042221 response to chemical 6.25% (5/80) 3.67 5e-05 0.000934
GO:0006767 water-soluble vitamin metabolic process 3.75% (3/80) 5.34 6.1e-05 0.001034
GO:0009110 vitamin biosynthetic process 3.75% (3/80) 5.36 5.9e-05 0.001057
GO:0008483 transaminase activity 3.75% (3/80) 5.24 7.5e-05 0.001096
GO:0016769 transferase activity, transferring nitrogenous groups 3.75% (3/80) 5.24 7.5e-05 0.001096
GO:0015297 antiporter activity 5.0% (4/80) 4.22 7e-05 0.001115
GO:0006766 vitamin metabolic process 3.75% (3/80) 5.13 9.5e-05 0.001323
GO:0000209 protein polyubiquitination 3.75% (3/80) 4.84 0.000171 0.002282
GO:0015291 secondary active transmembrane transporter activity 5.0% (4/80) 3.86 0.000181 0.00232
GO:0030170 pyridoxal phosphate binding 3.75% (3/80) 4.75 0.000206 0.002437
GO:0070279 vitamin B6 binding 3.75% (3/80) 4.75 0.000206 0.002437
GO:0017069 snRNA binding 2.5% (2/80) 6.35 0.00029 0.003315
GO:0044272 sulfur compound biosynthetic process 3.75% (3/80) 4.51 0.000331 0.003655
GO:0019842 vitamin binding 3.75% (3/80) 4.43 0.000392 0.00392
GO:0005794 Golgi apparatus 5.0% (4/80) 3.57 0.000383 0.003955
GO:0072330 monocarboxylic acid biosynthetic process 3.75% (3/80) 4.45 0.000373 0.003976
GO:0006511 ubiquitin-dependent protein catabolic process 5.0% (4/80) 3.46 0.000511 0.004959
GO:0043604 amide biosynthetic process 5.0% (4/80) 3.41 0.000578 0.005438
GO:1990904 ribonucleoprotein complex 6.25% (5/80) 2.86 0.000658 0.006015
GO:0019941 modification-dependent protein catabolic process 5.0% (4/80) 3.32 0.000728 0.006468
GO:0043632 modification-dependent macromolecule catabolic process 5.0% (4/80) 3.26 0.000848 0.007334
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.5% (2/80) 5.49 0.000951 0.008011
GO:0003714 transcription corepressor activity 2.5% (2/80) 5.44 0.001008 0.008272
GO:0061630 ubiquitin protein ligase activity 3.75% (3/80) 3.84 0.001272 0.01018
GO:0061659 ubiquitin-like protein ligase activity 3.75% (3/80) 3.78 0.001438 0.011221
GO:0043603 amide metabolic process 5.0% (4/80) 2.99 0.001691 0.012582
GO:0051603 proteolysis involved in protein catabolic process 5.0% (4/80) 2.98 0.001737 0.01263
GO:0030490 maturation of SSU-rRNA 2.5% (2/80) 5.07 0.001671 0.012734
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 3.75% (3/80) 3.66 0.001798 0.012789
GO:0016567 protein ubiquitination 5.0% (4/80) 2.9 0.002144 0.014598
GO:0005684 U2-type spliceosomal complex 2.5% (2/80) 4.91 0.0021 0.014606
GO:0010498 proteasomal protein catabolic process 3.75% (3/80) 3.52 0.002354 0.015692
GO:0005575 cellular_component 33.75% (27/80) 0.76 0.002747 0.016279
GO:0000160 phosphorelay signal transduction system 2.5% (2/80) 4.72 0.002702 0.016316
GO:0006790 sulfur compound metabolic process 3.75% (3/80) 3.43 0.002812 0.016362
GO:0030623 U5 snRNA binding 1.25% (1/80) 8.55 0.002659 0.016364
GO:0006396 RNA processing 6.25% (5/80) 2.38 0.002882 0.016467
GO:0030532 small nuclear ribonucleoprotein complex 2.5% (2/80) 4.74 0.002629 0.016494
GO:0097525 spliceosomal snRNP complex 2.5% (2/80) 4.74 0.00262 0.016765
GO:0030163 protein catabolic process 3.75% (3/80) 3.4 0.002993 0.016804
GO:0032446 protein modification by small protein conjugation 5.0% (4/80) 2.82 0.002602 0.016995
GO:0120114 Sm-like protein family complex 2.5% (2/80) 4.61 0.003154 0.017401
GO:0016070 RNA metabolic process 8.75% (7/80) 1.85 0.003355 0.018196
GO:0006520 amino acid metabolic process 5.0% (4/80) 2.7 0.00351 0.018415
GO:0034641 cellular nitrogen compound metabolic process 13.75% (11/80) 1.36 0.0035 0.018665
GO:0006364 rRNA processing 3.75% (3/80) 3.26 0.003912 0.020193
GO:0032040 small-subunit processome 2.5% (2/80) 4.23 0.005234 0.024274
GO:0017077 oxidative phosphorylation uncoupler activity 1.25% (1/80) 7.55 0.005311 0.024281
GO:0016072 rRNA metabolic process 3.75% (3/80) 3.15 0.004864 0.02432
GO:0006420 arginyl-tRNA aminoacylation 1.25% (1/80) 7.59 0.005179 0.024372
GO:0004814 arginine-tRNA ligase activity 1.25% (1/80) 7.59 0.005179 0.024372
GO:0110165 cellular anatomical entity 30.0% (24/80) 0.76 0.004827 0.024517
GO:0043226 organelle 17.5% (14/80) 1.1 0.005057 0.02452
GO:0043229 intracellular organelle 17.5% (14/80) 1.1 0.005053 0.024875
GO:0070647 protein modification by small protein conjugation or removal 5.0% (4/80) 2.49 0.005853 0.026013
GO:0030619 U1 snRNA binding 1.25% (1/80) 7.38 0.005973 0.026185
GO:0055085 transmembrane transport 7.5% (6/80) 1.89 0.005828 0.026269
GO:0009057 macromolecule catabolic process 5.0% (4/80) 2.47 0.006118 0.026456
GO:0030941 chloroplast targeting sequence binding 1.25% (1/80) 7.15 0.007032 0.027441
GO:0071007 U2-type catalytic step 2 spliceosome 1.25% (1/80) 7.15 0.007032 0.027441
GO:0022804 active transmembrane transporter activity 5.0% (4/80) 2.42 0.006931 0.027724
GO:0050794 regulation of cellular process 12.5% (10/80) 1.31 0.006901 0.027952
GO:0004842 ubiquitin-protein transferase activity 3.75% (3/80) 2.98 0.00666 0.028043
GO:0046483 heterocycle metabolic process 12.5% (10/80) 1.31 0.006836 0.028046
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.25% (1/80) 7.2 0.006767 0.028123
GO:0008150 biological_process 41.25% (33/80) 0.57 0.006616 0.028226
GO:0019787 ubiquitin-like protein transferase activity 3.75% (3/80) 2.93 0.007331 0.028264
GO:0044271 cellular nitrogen compound biosynthetic process 6.25% (5/80) 2.04 0.007611 0.028994
GO:0016755 aminoacyltransferase activity 3.75% (3/80) 2.9 0.007807 0.029389
GO:0016053 organic acid biosynthetic process 3.75% (3/80) 2.85 0.008639 0.031776
GO:0046394 carboxylic acid biosynthetic process 3.75% (3/80) 2.85 0.008639 0.031776
GO:0034660 ncRNA metabolic process 5.0% (4/80) 2.32 0.00878 0.031928
GO:0003677 DNA binding 8.75% (7/80) 1.57 0.009381 0.033731
GO:0043231 intracellular membrane-bounded organelle 15.0% (12/80) 1.1 0.009746 0.033898
GO:1901360 organic cyclic compound metabolic process 12.5% (10/80) 1.24 0.009669 0.034001
GO:0050789 regulation of biological process 12.5% (10/80) 1.24 0.009591 0.034103
GO:0043227 membrane-bounded organelle 15.0% (12/80) 1.09 0.010308 0.035469
GO:2001141 regulation of RNA biosynthetic process 7.5% (6/80) 1.68 0.011201 0.037335
GO:0006355 regulation of DNA-templated transcription 7.5% (6/80) 1.68 0.011201 0.037335
GO:0000398 mRNA splicing, via spliceosome 2.5% (2/80) 3.66 0.011107 0.037811
GO:0018130 heterocycle biosynthetic process 5.0% (4/80) 2.19 0.011919 0.038525
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.5% (2/80) 3.58 0.012308 0.038615
GO:0043687 post-translational protein modification 5.0% (4/80) 2.19 0.011889 0.03882
GO:0032787 monocarboxylic acid metabolic process 3.75% (3/80) 2.66 0.012302 0.038976
GO:0010468 regulation of gene expression 8.75% (7/80) 1.5 0.011869 0.039157
GO:0010556 regulation of macromolecule biosynthetic process 8.75% (7/80) 1.49 0.012282 0.039303
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome 1.25% (1/80) 6.29 0.012701 0.039458
GO:0009889 regulation of biosynthetic process 8.75% (7/80) 1.47 0.013477 0.041072
GO:0031326 regulation of cellular biosynthetic process 8.75% (7/80) 1.47 0.013427 0.041315
GO:0051252 regulation of RNA metabolic process 7.5% (6/80) 1.61 0.014034 0.042367
GO:0000375 RNA splicing, via transesterification reactions 2.5% (2/80) 3.47 0.014292 0.042741
GO:0065007 biological regulation 12.5% (10/80) 1.14 0.015187 0.044999
GO:0042170 plastid membrane 2.5% (2/80) 3.4 0.015651 0.045119
GO:0031359 obsolete integral component of chloroplast outer membrane 1.25% (1/80) 5.99 0.015589 0.045349
GO:0045036 protein targeting to chloroplast 1.25% (1/80) 6.0 0.015458 0.04538
GO:0030684 preribosome 2.5% (2/80) 3.35 0.016764 0.047055
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.5% (6/80) 1.55 0.016723 0.047357
GO:0003712 transcription coregulator activity 2.5% (2/80) 3.36 0.016615 0.04747
GO:0005681 spliceosomal complex 2.5% (2/80) 3.32 0.01743 0.0485
GO:1901566 organonitrogen compound biosynthetic process 5.0% (4/80) 2.01 0.017846 0.04923
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (80) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms