Coexpression cluster: Cluster_56 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015291 secondary active transmembrane transporter activity 8.97% (7/78) 4.75 0.0 1e-06
GO:0005215 transporter activity 19.23% (15/78) 2.71 0.0 1e-06
GO:0022857 transmembrane transporter activity 19.23% (15/78) 2.74 0.0 1e-06
GO:0055085 transmembrane transport 17.95% (14/78) 2.94 0.0 2e-06
GO:0003674 molecular_function 76.92% (60/78) 0.75 0.0 2e-06
GO:0022804 active transmembrane transporter activity 11.54% (9/78) 3.74 0.0 2e-06
GO:0006810 transport 19.23% (15/78) 2.31 0.0 1.6e-05
GO:0051234 establishment of localization 19.23% (15/78) 2.28 0.0 1.6e-05
GO:0042910 xenobiotic transmembrane transporter activity 6.41% (5/78) 5.13 0.0 1.6e-05
GO:0051179 localization 19.23% (15/78) 2.26 0.0 1.6e-05
GO:0009987 cellular process 43.59% (34/78) 1.24 0.0 1.8e-05
GO:0015297 antiporter activity 6.41% (5/78) 4.69 2e-06 5.6e-05
GO:0016020 membrane 15.38% (12/78) 2.33 4e-06 0.000141
GO:0006090 pyruvate metabolic process 5.13% (4/78) 4.79 1.4e-05 0.000434
GO:0008150 biological_process 52.56% (41/78) 0.78 4.2e-05 0.001213
GO:0032787 monocarboxylic acid metabolic process 6.41% (5/78) 3.64 5.3e-05 0.001449
GO:0008271 secondary active sulfate transmembrane transporter activity 2.56% (2/78) 6.48 0.000222 0.00211
GO:1901682 sulfur compound transmembrane transporter activity 2.56% (2/78) 6.48 0.000222 0.00211
GO:0072348 sulfur compound transport 2.56% (2/78) 6.48 0.000222 0.00211
GO:0015116 sulfate transmembrane transporter activity 2.56% (2/78) 6.48 0.000222 0.00211
GO:0008272 sulfate transport 2.56% (2/78) 6.48 0.000222 0.00211
GO:0009132 nucleoside diphosphate metabolic process 3.85% (3/78) 4.67 0.000231 0.002145
GO:0072526 pyridine-containing compound catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009185 ribonucleoside diphosphate metabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009261 ribonucleotide catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009181 purine ribonucleoside diphosphate catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009179 purine ribonucleoside diphosphate metabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0072523 purine-containing compound catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009191 ribonucleoside diphosphate catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0006096 glycolytic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0006195 purine nucleotide catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0046032 ADP catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0046031 ADP metabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009134 nucleoside diphosphate catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009135 purine nucleoside diphosphate metabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009137 purine nucleoside diphosphate catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0009154 purine ribonucleotide catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0019364 pyridine nucleotide catabolic process 3.85% (3/78) 4.74 0.000197 0.002207
GO:0019693 ribose phosphate metabolic process 5.13% (4/78) 3.79 0.000208 0.002273
GO:1901292 nucleoside phosphate catabolic process 3.85% (3/78) 4.6 0.000268 0.002295
GO:0004743 pyruvate kinase activity 2.56% (2/78) 6.36 0.000266 0.002327
GO:0030955 potassium ion binding 2.56% (2/78) 6.36 0.000266 0.002327
GO:0031420 alkali metal ion binding 2.56% (2/78) 6.36 0.000266 0.002327
GO:0009166 nucleotide catabolic process 3.85% (3/78) 4.69 0.000219 0.002335
GO:0046434 organophosphate catabolic process 3.85% (3/78) 4.48 0.000338 0.002788
GO:0006091 generation of precursor metabolites and energy 5.13% (4/78) 3.61 0.000336 0.002821
GO:0006082 organic acid metabolic process 8.97% (7/78) 2.66 0.000123 0.00284
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 2.56% (2/78) 6.13 0.000366 0.002909
GO:1901565 organonitrogen compound catabolic process 5.13% (4/78) 3.58 0.00036 0.002913
GO:0043436 oxoacid metabolic process 8.97% (7/78) 2.66 0.000122 0.002964
GO:0019752 carboxylic acid metabolic process 8.97% (7/78) 2.67 0.000118 0.003033
GO:0016116 carotenoid metabolic process 2.56% (2/78) 6.77 0.000146 0.003034
GO:0016108 tetraterpenoid metabolic process 2.56% (2/78) 6.77 0.000146 0.003034
GO:0003824 catalytic activity 41.03% (32/78) 0.81 0.000405 0.003103
GO:0009150 purine ribonucleotide metabolic process 5.13% (4/78) 3.9 0.000157 0.003124
GO:0006163 purine nucleotide metabolic process 5.13% (4/78) 3.54 0.000403 0.003147
GO:0009259 ribonucleotide metabolic process 5.13% (4/78) 3.83 0.000187 0.003544
GO:0072521 purine-containing compound metabolic process 5.13% (4/78) 3.46 0.000501 0.003774
GO:0046496 nicotinamide nucleotide metabolic process 3.85% (3/78) 4.17 0.000639 0.004656
GO:0046034 ATP metabolic process 3.85% (3/78) 4.17 0.000639 0.004656
GO:0019362 pyridine nucleotide metabolic process 3.85% (3/78) 4.13 0.000686 0.004913
GO:1901136 carbohydrate derivative catabolic process 3.85% (3/78) 4.1 0.000734 0.005177
GO:0016052 carbohydrate catabolic process 3.85% (3/78) 4.08 0.00076 0.005269
GO:0009205 purine ribonucleoside triphosphate metabolic process 3.85% (3/78) 4.05 0.000811 0.005373
GO:0009144 purine nucleoside triphosphate metabolic process 3.85% (3/78) 4.05 0.000811 0.005373
GO:0009117 nucleotide metabolic process 5.13% (4/78) 3.28 0.000787 0.005375
GO:0006753 nucleoside phosphate metabolic process 5.13% (4/78) 3.25 0.000847 0.005441
GO:0072524 pyridine-containing compound metabolic process 3.85% (3/78) 4.03 0.000838 0.005467
GO:0009199 ribonucleoside triphosphate metabolic process 3.85% (3/78) 3.99 0.000922 0.005838
GO:0009141 nucleoside triphosphate metabolic process 3.85% (3/78) 3.91 0.001073 0.006696
GO:0032561 guanyl ribonucleotide binding 5.13% (4/78) 3.09 0.001293 0.007846
GO:0005525 GTP binding 5.13% (4/78) 3.09 0.001293 0.007846
GO:0019001 guanyl nucleotide binding 5.13% (4/78) 3.04 0.001465 0.008767
GO:0034655 nucleobase-containing compound catabolic process 3.85% (3/78) 3.74 0.001496 0.008832
GO:0055086 nucleobase-containing small molecule metabolic process 5.13% (4/78) 2.99 0.001676 0.009767
GO:0044281 small molecule metabolic process 8.97% (7/78) 2.01 0.00176 0.009987
GO:0006720 isoprenoid metabolic process 3.85% (3/78) 3.67 0.001741 0.010012
GO:0022834 ligand-gated channel activity 2.56% (2/78) 4.9 0.002072 0.010287
GO:0015276 ligand-gated monoatomic ion channel activity 2.56% (2/78) 4.9 0.002072 0.010287
GO:0004375 glycine dehydrogenase (decarboxylating) activity 1.28% (1/78) 8.94 0.002035 0.010339
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 1.28% (1/78) 8.94 0.002035 0.010339
GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor 1.28% (1/78) 8.94 0.002035 0.010339
GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.28% (1/78) 8.94 0.002035 0.010339
GO:0016719 9,9'-di-cis-zeta-carotene desaturase activity 1.28% (1/78) 8.94 0.002035 0.010339
GO:0008942 nitrite reductase [NAD(P)H] activity 1.28% (1/78) 8.94 0.002035 0.010339
GO:0098809 nitrite reductase activity 1.28% (1/78) 8.94 0.002035 0.010339
GO:0044270 cellular nitrogen compound catabolic process 3.85% (3/78) 3.62 0.001918 0.010746
GO:0046700 heterocycle catabolic process 3.85% (3/78) 3.61 0.001964 0.010864
GO:1901135 carbohydrate derivative metabolic process 5.13% (4/78) 2.87 0.002221 0.010906
GO:0110165 cellular anatomical entity 16.67% (13/78) 1.29 0.00226 0.010972
GO:0051537 2 iron, 2 sulfur cluster binding 2.56% (2/78) 4.81 0.002328 0.011181
GO:0043168 anion binding 19.23% (15/78) 1.14 0.002803 0.013314
GO:0015318 inorganic molecular entity transmembrane transporter activity 5.13% (4/78) 2.75 0.003023 0.014206
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.41% (5/78) 2.33 0.003227 0.014689
GO:1901702 salt transmembrane transporter activity 3.85% (3/78) 3.36 0.003214 0.014786
GO:0015103 inorganic anion transmembrane transporter activity 2.56% (2/78) 4.58 0.003183 0.0148
GO:0030001 metal ion transport 3.85% (3/78) 3.31 0.003538 0.015938
GO:0006083 acetate metabolic process 1.28% (1/78) 7.94 0.004065 0.016299
GO:0003987 acetate-CoA ligase activity 1.28% (1/78) 7.94 0.004065 0.016299
GO:0050242 pyruvate, phosphate dikinase activity 1.28% (1/78) 7.94 0.004065 0.016299
GO:0016781 phosphotransferase activity, paired acceptors 1.28% (1/78) 7.94 0.004065 0.016299
GO:0016208 AMP binding 1.28% (1/78) 7.94 0.004065 0.016299
GO:0019427 acetyl-CoA biosynthetic process from acetate 1.28% (1/78) 7.94 0.004065 0.016299
GO:0010343 singlet oxygen-mediated programmed cell death 1.28% (1/78) 7.94 0.004065 0.016299
GO:0097468 programmed cell death in response to reactive oxygen species 1.28% (1/78) 7.94 0.004065 0.016299
GO:0009882 blue light photoreceptor activity 1.28% (1/78) 7.94 0.004065 0.016299
GO:1901363 heterocyclic compound binding 19.23% (15/78) 1.1 0.003698 0.01649
GO:0016462 pyrophosphatase activity 6.41% (5/78) 2.25 0.004154 0.016502
GO:0015698 inorganic anion transport 2.56% (2/78) 4.36 0.004339 0.017083
GO:0015075 monoatomic ion transmembrane transporter activity 5.13% (4/78) 2.59 0.00447 0.017285
GO:0019439 aromatic compound catabolic process 3.85% (3/78) 3.19 0.004469 0.017437
GO:0016817 hydrolase activity, acting on acid anhydrides 6.41% (5/78) 2.21 0.004646 0.017502
GO:0017076 purine nucleotide binding 17.95% (14/78) 1.14 0.004006 0.017507
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.41% (5/78) 2.21 0.004573 0.017531
GO:0036094 small molecule binding 19.23% (15/78) 1.09 0.003979 0.017566
GO:1901361 organic cyclic compound catabolic process 3.85% (3/78) 3.17 0.004624 0.017572
GO:0016491 oxidoreductase activity 11.54% (9/78) 1.45 0.005669 0.021175
GO:0034755 iron ion transmembrane transport 1.28% (1/78) 7.36 0.006092 0.021644
GO:0005381 iron ion transmembrane transporter activity 1.28% (1/78) 7.36 0.006092 0.021644
GO:0015930 glutamate synthase activity 1.28% (1/78) 7.36 0.006092 0.021644
GO:0070402 NADPH binding 1.28% (1/78) 7.36 0.006092 0.021644
GO:0006537 glutamate biosynthetic process 1.28% (1/78) 7.36 0.006092 0.021644
GO:0004134 4-alpha-glucanotransferase activity 1.28% (1/78) 7.36 0.006092 0.021644
GO:1901265 nucleoside phosphate binding 17.95% (14/78) 1.06 0.006526 0.022815
GO:0000166 nucleotide binding 17.95% (14/78) 1.06 0.006526 0.022815
GO:0044248 cellular catabolic process 5.13% (4/78) 2.41 0.006952 0.024111
GO:0003924 GTPase activity 3.85% (3/78) 2.94 0.007145 0.024584
GO:0050661 NADP binding 2.56% (2/78) 3.94 0.007594 0.025926
GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors 1.28% (1/78) 6.94 0.008115 0.026463
GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor 1.28% (1/78) 6.94 0.008115 0.026463
GO:0030522 intracellular receptor signaling pathway 1.28% (1/78) 6.94 0.008115 0.026463
GO:0009785 blue light signaling pathway 1.28% (1/78) 6.94 0.008115 0.026463
GO:0071483 cellular response to blue light 1.28% (1/78) 6.94 0.008115 0.026463
GO:0019637 organophosphate metabolic process 5.13% (4/78) 2.36 0.0079 0.026764
GO:0005488 binding 42.31% (33/78) 0.54 0.008881 0.028747
GO:0006721 terpenoid metabolic process 2.56% (2/78) 3.81 0.009026 0.029001
GO:0046524 sucrose-phosphate synthase activity 1.28% (1/78) 6.62 0.010133 0.030539
GO:0140647 P450-containing electron transport chain 1.28% (1/78) 6.62 0.010133 0.030539
GO:0043650 dicarboxylic acid biosynthetic process 1.28% (1/78) 6.62 0.010133 0.030539
GO:0016109 tetraterpenoid biosynthetic process 1.28% (1/78) 6.62 0.010133 0.030539
GO:0071478 cellular response to radiation 1.28% (1/78) 6.62 0.010133 0.030539
GO:0016117 carotenoid biosynthetic process 1.28% (1/78) 6.62 0.010133 0.030539
GO:0071482 cellular response to light stimulus 1.28% (1/78) 6.62 0.010133 0.030539
GO:0104004 cellular response to environmental stimulus 1.28% (1/78) 6.62 0.010133 0.030539
GO:0071214 cellular response to abiotic stimulus 1.28% (1/78) 6.62 0.010133 0.030539
GO:0022836 gated channel activity 2.56% (2/78) 3.64 0.01138 0.034062
GO:0009881 photoreceptor activity 1.28% (1/78) 6.36 0.012147 0.035627
GO:0006546 glycine catabolic process 1.28% (1/78) 6.36 0.012147 0.035627
GO:0009071 serine family amino acid catabolic process 1.28% (1/78) 6.36 0.012147 0.035627
GO:0051536 iron-sulfur cluster binding 2.56% (2/78) 3.53 0.013083 0.037863
GO:0051540 metal cluster binding 2.56% (2/78) 3.53 0.013083 0.037863
GO:0005975 carbohydrate metabolic process 6.41% (5/78) 1.83 0.013307 0.038259
GO:0090079 translation regulator activity, nucleic acid binding 2.56% (2/78) 3.5 0.013674 0.038802
GO:0008135 translation factor activity, RNA binding 2.56% (2/78) 3.5 0.013674 0.038802
GO:0004332 fructose-bisphosphate aldolase activity 1.28% (1/78) 6.13 0.014158 0.039158
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity 1.28% (1/78) 6.13 0.014158 0.039158
GO:0009637 response to blue light 1.28% (1/78) 6.13 0.014158 0.039158
GO:0006812 monoatomic cation transport 3.85% (3/78) 2.57 0.014252 0.039172
GO:0043167 ion binding 23.08% (18/78) 0.78 0.01396 0.039359
GO:0045182 translation regulator activity 2.56% (2/78) 3.4 0.015515 0.042375
GO:0006796 phosphate-containing compound metabolic process 11.54% (9/78) 1.2 0.016307 0.043453
GO:0035639 purine ribonucleoside triphosphate binding 14.1% (11/78) 1.05 0.016245 0.043552
GO:0006536 glutamate metabolic process 1.28% (1/78) 5.94 0.016164 0.043603
GO:0005986 sucrose biosynthetic process 1.28% (1/78) 5.94 0.016164 0.043603
GO:0006793 phosphorus metabolic process 11.54% (9/78) 1.19 0.016558 0.043853
GO:0032555 purine ribonucleotide binding 15.38% (12/78) 0.98 0.017005 0.044767
GO:0016878 acid-thiol ligase activity 1.28% (1/78) 5.77 0.018166 0.045364
GO:0008079 translation termination factor activity 1.28% (1/78) 5.77 0.018166 0.045364
GO:0003747 translation release factor activity 1.28% (1/78) 5.77 0.018166 0.045364
GO:0006826 iron ion transport 1.28% (1/78) 5.77 0.018166 0.045364
GO:0016405 CoA-ligase activity 1.28% (1/78) 5.77 0.018166 0.045364
GO:0016157 sucrose synthase activity 1.28% (1/78) 5.77 0.018166 0.045364
GO:0016787 hydrolase activity 14.1% (11/78) 1.03 0.01759 0.045755
GO:0008324 monoatomic cation transmembrane transporter activity 3.85% (3/78) 2.46 0.017492 0.045773
GO:0032553 ribonucleotide binding 15.38% (12/78) 0.97 0.018608 0.046203
GO:0008299 isoprenoid biosynthetic process 2.56% (2/78) 3.28 0.018124 0.046866
GO:0044237 cellular metabolic process 20.51% (16/78) 0.78 0.020224 0.048294
GO:0006811 monoatomic ion transport 3.85% (3/78) 2.38 0.020356 0.048346
GO:0017022 myosin binding 1.28% (1/78) 5.62 0.020164 0.048417
GO:0006415 translational termination 1.28% (1/78) 5.62 0.020164 0.048417
GO:0012501 programmed cell death 1.28% (1/78) 5.62 0.020164 0.048417
GO:0008219 cell death 1.28% (1/78) 5.62 0.020164 0.048417
GO:0016832 aldehyde-lyase activity 1.28% (1/78) 5.62 0.020164 0.048417
GO:0097367 carbohydrate derivative binding 15.38% (12/78) 0.95 0.019723 0.048695
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (78) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms