Coexpression cluster: Cluster_191 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 52.56% (82/156) 0.85 0.0 0.0
GO:0003674 molecular_function 67.95% (106/156) 0.57 0.0 5e-06
GO:0032991 protein-containing complex 11.54% (18/156) 1.94 1e-06 0.000229
GO:0009987 cellular process 33.97% (53/156) 0.88 3e-06 0.000417
GO:0008150 biological_process 46.79% (73/156) 0.61 1.5e-05 0.001711
GO:0097159 organic cyclic compound binding 30.13% (47/156) 0.84 2.6e-05 0.002516
GO:0090304 nucleic acid metabolic process 9.62% (15/156) 1.79 3.3e-05 0.002789
GO:0043170 macromolecule metabolic process 22.44% (35/156) 1.01 4.1e-05 0.003003
GO:0005515 protein binding 21.79% (34/156) 0.99 6.5e-05 0.004244
GO:0005575 cellular_component 19.23% (30/156) 1.05 9.3e-05 0.005446
GO:0140513 nuclear protein-containing complex 4.49% (7/156) 2.69 0.000118 0.006287
GO:0006139 nucleobase-containing compound metabolic process 10.26% (16/156) 1.55 0.00013 0.00633
GO:0032555 purine ribonucleotide binding 16.67% (26/156) 1.1 0.000178 0.007996
GO:0006397 mRNA processing 3.21% (5/156) 3.21 0.000221 0.008613
GO:0097367 carbohydrate derivative binding 16.67% (26/156) 1.07 0.000247 0.009021
GO:0032553 ribonucleotide binding 16.67% (26/156) 1.08 0.000217 0.009063
GO:0000166 nucleotide binding 17.31% (27/156) 1.0 0.000383 0.011177
GO:1901265 nucleoside phosphate binding 17.31% (27/156) 1.0 0.000383 0.011177
GO:0017076 purine nucleotide binding 16.67% (26/156) 1.03 0.00038 0.012323
GO:0046483 heterocycle metabolic process 10.26% (16/156) 1.41 0.000372 0.012784
GO:0003676 nucleic acid binding 14.74% (23/156) 1.09 0.000475 0.013199
GO:0006725 cellular aromatic compound metabolic process 10.26% (16/156) 1.36 0.00053 0.01406
GO:0016071 mRNA metabolic process 3.21% (5/156) 2.91 0.000563 0.014287
GO:1901360 organic cyclic compound metabolic process 10.26% (16/156) 1.33 0.000657 0.015975
GO:0036094 small molecule binding 17.31% (27/156) 0.93 0.000805 0.016211
GO:0006396 RNA processing 4.49% (7/156) 2.23 0.000801 0.016707
GO:1901363 heterocyclic compound binding 17.31% (27/156) 0.95 0.000715 0.016712
GO:0032559 adenyl ribonucleotide binding 14.74% (23/156) 1.04 0.000788 0.017045
GO:0035639 purine ribonucleoside triphosphate binding 14.1% (22/156) 1.05 0.000916 0.017261
GO:0006807 nitrogen compound metabolic process 21.79% (34/156) 0.79 0.000889 0.017312
GO:0030117 membrane coat 1.92% (3/156) 4.07 0.000775 0.017399
GO:0043168 anion binding 16.67% (26/156) 0.93 0.00103 0.017684
GO:0016043 cellular component organization 5.77% (9/156) 1.85 0.000973 0.01776
GO:0044238 primary metabolic process 25.0% (39/156) 0.71 0.001017 0.018003
GO:0015631 tubulin binding 2.56% (4/156) 3.15 0.001127 0.018808
GO:0008092 cytoskeletal protein binding 3.21% (5/156) 2.66 0.001256 0.020369
GO:0007017 microtubule-based process 2.56% (4/156) 3.08 0.001327 0.02094
GO:0007018 microtubule-based movement 1.92% (3/156) 3.77 0.001408 0.021642
GO:0016070 RNA metabolic process 6.41% (10/156) 1.64 0.001489 0.021737
GO:0030554 adenyl nucleotide binding 14.74% (23/156) 0.97 0.001529 0.021778
GO:0003777 microtubule motor activity 1.92% (3/156) 3.74 0.001485 0.022238
GO:0015031 protein transport 3.21% (5/156) 2.49 0.002088 0.029029
GO:0036211 protein modification process 11.54% (18/156) 1.08 0.002157 0.029292
GO:0071840 cellular component organization or biogenesis 5.77% (9/156) 1.67 0.002289 0.030376
GO:0070603 SWI/SNF superfamily-type complex 1.28% (2/156) 4.77 0.002412 0.031304
GO:0004631 phosphomevalonate kinase activity 0.64% (1/156) 7.94 0.004069 0.031688
GO:0060560 developmental growth involved in morphogenesis 0.64% (1/156) 7.94 0.004069 0.031688
GO:0048588 developmental cell growth 0.64% (1/156) 7.94 0.004069 0.031688
GO:0005637 nuclear inner membrane 0.64% (1/156) 7.94 0.004069 0.031688
GO:0009932 cell tip growth 0.64% (1/156) 7.94 0.004069 0.031688
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity 0.64% (1/156) 7.94 0.004069 0.031688
GO:0009860 pollen tube growth 0.64% (1/156) 7.94 0.004069 0.031688
GO:0070985 transcription factor TFIIK complex 0.64% (1/156) 7.94 0.004069 0.031688
GO:0009846 pollen germination 0.64% (1/156) 7.94 0.004069 0.031688
GO:0009826 unidimensional cell growth 0.64% (1/156) 7.94 0.004069 0.031688
GO:1902494 catalytic complex 3.85% (6/156) 2.15 0.002511 0.031873
GO:0003774 cytoskeletal motor activity 1.92% (3/156) 3.44 0.00273 0.032532
GO:0043933 protein-containing complex organization 3.21% (5/156) 2.37 0.002987 0.032917
GO:0051641 cellular localization 3.85% (6/156) 2.11 0.002823 0.032967
GO:0043167 ion binding 21.79% (34/156) 0.7 0.002724 0.033141
GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity 1.28% (2/156) 4.69 0.002689 0.033409
GO:1904949 ATPase complex 1.28% (2/156) 4.62 0.002979 0.033462
GO:0034641 cellular nitrogen compound metabolic process 10.26% (16/156) 1.12 0.002947 0.033745
GO:0010605 negative regulation of macromolecule metabolic process 2.56% (4/156) 2.67 0.003707 0.033826
GO:0009892 negative regulation of metabolic process 2.56% (4/156) 2.67 0.003707 0.033826
GO:0005524 ATP binding 12.18% (19/156) 0.97 0.003804 0.034176
GO:0008104 protein localization 3.21% (5/156) 2.3 0.003683 0.03469
GO:0070727 cellular macromolecule localization 3.21% (5/156) 2.3 0.003683 0.03469
GO:0033036 macromolecule localization 3.21% (5/156) 2.3 0.003683 0.03469
GO:0005667 transcription regulator complex 1.92% (3/156) 3.34 0.003338 0.034808
GO:0071704 organic substance metabolic process 25.0% (39/156) 0.59 0.004544 0.034918
GO:0051649 establishment of localization in cell 3.21% (5/156) 2.31 0.003499 0.035232
GO:0045184 establishment of protein localization 3.21% (5/156) 2.33 0.003322 0.035274
GO:0046907 intracellular transport 3.21% (5/156) 2.33 0.003322 0.035274
GO:0031324 negative regulation of cellular metabolic process 2.56% (4/156) 2.7 0.003456 0.035409
GO:0006886 intracellular protein transport 2.56% (4/156) 2.68 0.003622 0.035851
GO:0003006 developmental process involved in reproduction 1.28% (2/156) 4.24 0.005016 0.037078
GO:0003697 single-stranded DNA binding 1.28% (2/156) 4.24 0.005016 0.037078
GO:0043412 macromolecule modification 11.54% (18/156) 0.97 0.004974 0.037721
GO:0010629 negative regulation of gene expression 1.92% (3/156) 3.1 0.005285 0.038581
GO:0044237 cellular metabolic process 19.23% (30/156) 0.69 0.005385 0.038824
GO:0060548 obsolete negative regulation of cell death 0.64% (1/156) 6.94 0.008123 0.043922
GO:0000339 RNA cap binding 0.64% (1/156) 6.94 0.008123 0.043922
GO:0032039 integrator complex 0.64% (1/156) 6.94 0.008123 0.043922
GO:0015377 chloride:monoatomic cation symporter activity 0.64% (1/156) 6.94 0.008123 0.043922
GO:0005846 nuclear cap binding complex 0.64% (1/156) 6.94 0.008123 0.043922
GO:0015296 monoatomic anion:monoatomic cation symporter activity 0.64% (1/156) 6.94 0.008123 0.043922
GO:0015294 solute:monoatomic cation symporter activity 0.64% (1/156) 6.94 0.008123 0.043922
GO:0032806 carboxy-terminal domain protein kinase complex 0.64% (1/156) 6.94 0.008123 0.043922
GO:0005675 transcription factor TFIIH holo complex 0.64% (1/156) 6.94 0.008123 0.043922
GO:0022821 solute:potassium antiporter activity 0.64% (1/156) 6.94 0.008123 0.043922
GO:0070939 Dsl1/NZR complex 0.64% (1/156) 6.94 0.008123 0.043922
GO:0015386 potassium:proton antiporter activity 0.64% (1/156) 6.94 0.008123 0.043922
GO:0016035 zeta DNA polymerase complex 0.64% (1/156) 6.94 0.008123 0.043922
GO:0048589 developmental growth 0.64% (1/156) 6.94 0.008123 0.043922
GO:0008174 mRNA methyltransferase activity 0.64% (1/156) 6.94 0.008123 0.043922
GO:0004482 mRNA 5'-cap (guanine-N7-)-methyltransferase activity 0.64% (1/156) 6.94 0.008123 0.043922
GO:0034518 RNA cap binding complex 0.64% (1/156) 6.94 0.008123 0.043922
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 1.28% (2/156) 4.08 0.006216 0.04427
GO:0016740 transferase activity 16.03% (25/156) 0.72 0.008479 0.04543
GO:0008170 N-methyltransferase activity 1.28% (2/156) 4.03 0.006642 0.046179
GO:0030120 vesicle coat 1.28% (2/156) 4.03 0.006642 0.046179
GO:0022853 active monoatomic ion transmembrane transporter activity 1.92% (3/156) 2.96 0.006961 0.046725
GO:0140534 endoplasmic reticulum protein-containing complex 1.28% (2/156) 3.99 0.007082 0.046995
GO:0006259 DNA metabolic process 3.21% (5/156) 2.08 0.006937 0.047104
GO:0006281 DNA repair 2.56% (4/156) 2.42 0.006925 0.047579
GO:0030244 cellulose biosynthetic process 1.28% (2/156) 3.81 0.008966 0.047599
GO:0008017 microtubule binding 1.92% (3/156) 2.91 0.007581 0.049195
GO:0048523 negative regulation of cellular process 2.56% (4/156) 2.29 0.00938 0.049353
GO:0030243 cellulose metabolic process 1.28% (2/156) 3.77 0.009468 0.049368
GO:0010608 post-transcriptional regulation of gene expression 1.28% (2/156) 3.94 0.007534 0.049434
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (156) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms