Coexpression cluster: Cluster_6 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005575 cellular_component 39.71% (27/68) 2.1 0.0 0.0
GO:0032991 protein-containing complex 25.0% (17/68) 3.06 0.0 0.0
GO:0140535 intracellular protein-containing complex 13.24% (9/68) 4.78 0.0 0.0
GO:0005839 proteasome core complex 7.35% (5/68) 6.94 0.0 0.0
GO:0036402 proteasome-activating activity 5.88% (4/68) 7.44 0.0 0.0
GO:1902494 catalytic complex 13.24% (9/68) 3.93 0.0 0.0
GO:0017111 ribonucleoside triphosphate phosphatase activity 13.24% (9/68) 3.38 0.0 1.1e-05
GO:0009057 macromolecule catabolic process 10.29% (7/68) 4.0 0.0 1.3e-05
GO:0016462 pyrophosphatase activity 13.24% (9/68) 3.29 0.0 1.4e-05
GO:0016817 hydrolase activity, acting on acid anhydrides 13.24% (9/68) 3.25 0.0 1.4e-05
GO:1901565 organonitrogen compound catabolic process 8.82% (6/68) 4.37 0.0 1.5e-05
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 13.24% (9/68) 3.26 0.0 1.5e-05
GO:0019773 proteasome core complex, alpha-subunit complex 4.41% (3/68) 7.4 1e-06 1.8e-05
GO:1901575 organic substance catabolic process 13.24% (9/68) 3.14 1e-06 2.2e-05
GO:0016887 ATP hydrolysis activity 10.29% (7/68) 3.74 1e-06 2.4e-05
GO:0009056 catabolic process 13.24% (9/68) 3.09 1e-06 2.5e-05
GO:0030163 protein catabolic process 5.88% (4/68) 5.62 1e-06 3.1e-05
GO:0005737 cytoplasm 8.82% (6/68) 4.04 2e-06 3.8e-05
GO:0051603 proteolysis involved in protein catabolic process 7.35% (5/68) 4.2 8e-06 0.000158
GO:0005838 proteasome regulatory particle 2.94% (2/68) 8.55 9e-06 0.000173
GO:0008150 biological_process 54.41% (37/68) 0.83 3.6e-05 0.000644
GO:0000502 proteasome complex 2.94% (2/68) 7.55 4.6e-05 0.000783
GO:0030117 membrane coat 4.41% (3/68) 5.26 6.7e-05 0.001085
GO:0016192 vesicle-mediated transport 7.35% (5/68) 3.54 7.3e-05 0.001124
GO:0042176 regulation of protein catabolic process 2.94% (2/68) 6.68 0.000169 0.002325
GO:0035639 purine ribonucleoside triphosphate binding 20.59% (14/68) 1.6 0.000165 0.002361
GO:0006886 intracellular protein transport 5.88% (4/68) 3.88 0.000163 0.002424
GO:0048193 Golgi vesicle transport 4.41% (3/68) 4.75 0.000196 0.00261
GO:1901564 organonitrogen compound metabolic process 25.0% (17/68) 1.35 0.000241 0.002895
GO:0004298 threonine-type endopeptidase activity 2.94% (2/68) 6.44 0.000239 0.002961
GO:1905369 endopeptidase complex 2.94% (2/68) 6.44 0.000239 0.002961
GO:0019538 protein metabolic process 22.06% (15/68) 1.46 0.000256 0.002971
GO:0030131 clathrin adaptor complex 2.94% (2/68) 6.33 0.000278 0.003137
GO:0070003 threonine-type peptidase activity 2.94% (2/68) 6.23 0.000321 0.003509
GO:0009894 regulation of catabolic process 2.94% (2/68) 6.14 0.000366 0.003681
GO:0008152 metabolic process 35.29% (24/68) 1.0 0.000361 0.00373
GO:0043170 macromolecule metabolic process 26.47% (18/68) 1.25 0.000359 0.003817
GO:0043167 ion binding 29.41% (20/68) 1.13 0.000444 0.004348
GO:0030119 AP-type membrane coat adaptor complex 2.94% (2/68) 5.89 0.00052 0.004835
GO:0051246 regulation of protein metabolic process 4.41% (3/68) 4.28 0.000509 0.004851
GO:0032555 purine ribonucleotide binding 20.59% (14/68) 1.4 0.000644 0.005703
GO:0015031 protein transport 5.88% (4/68) 3.36 0.000634 0.005752
GO:0016787 hydrolase activity 19.12% (13/68) 1.47 0.000665 0.005754
GO:0032553 ribonucleotide binding 20.59% (14/68) 1.39 0.00073 0.00617
GO:0097367 carbohydrate derivative binding 20.59% (14/68) 1.37 0.000791 0.006542
GO:0017076 purine nucleotide binding 20.59% (14/68) 1.33 0.001039 0.006778
GO:0008104 protein localization 5.88% (4/68) 3.17 0.001037 0.006887
GO:0033036 macromolecule localization 5.88% (4/68) 3.17 0.001037 0.006887
GO:0070727 cellular macromolecule localization 5.88% (4/68) 3.17 0.001037 0.006887
GO:0044238 primary metabolic process 30.88% (21/68) 1.02 0.000878 0.007098
GO:0005524 ATP binding 17.65% (12/68) 1.51 0.000897 0.007099
GO:0071704 organic substance metabolic process 32.35% (22/68) 0.97 0.001025 0.007192
GO:0046907 intracellular transport 5.88% (4/68) 3.21 0.000948 0.007195
GO:0045184 establishment of protein localization 5.88% (4/68) 3.21 0.000948 0.007195
GO:0051649 establishment of localization in cell 5.88% (4/68) 3.19 0.000992 0.007232
GO:0098796 membrane protein complex 5.88% (4/68) 3.14 0.001132 0.007257
GO:0006508 proteolysis 8.82% (6/68) 2.39 0.001019 0.007287
GO:1905368 peptidase complex 2.94% (2/68) 5.44 0.00098 0.007293
GO:0030120 vesicle coat 2.94% (2/68) 5.23 0.001306 0.008235
GO:0006807 nitrogen compound metabolic process 26.47% (18/68) 1.07 0.00148 0.009174
GO:0043632 modification-dependent macromolecule catabolic process 4.41% (3/68) 3.65 0.001811 0.009624
GO:0006511 ubiquitin-dependent protein catabolic process 4.41% (3/68) 3.65 0.001811 0.009624
GO:0019941 modification-dependent protein catabolic process 4.41% (3/68) 3.65 0.001811 0.009624
GO:0043625 delta DNA polymerase complex 1.47% (1/68) 9.14 0.001774 0.009849
GO:2000640 positive regulation of SREBP signaling pathway 1.47% (1/68) 9.14 0.001774 0.009849
GO:2000638 regulation of SREBP signaling pathway 1.47% (1/68) 9.14 0.001774 0.009849
GO:0018279 protein N-linked glycosylation via asparagine 1.47% (1/68) 9.14 0.001774 0.009849
GO:0140657 ATP-dependent activity 7.35% (5/68) 2.55 0.001659 0.010117
GO:0043168 anion binding 20.59% (14/68) 1.24 0.001968 0.010311
GO:0110165 cellular anatomical entity 17.65% (12/68) 1.37 0.001999 0.01033
GO:1901265 nucleoside phosphate binding 20.59% (14/68) 1.25 0.001768 0.010437
GO:0000166 nucleotide binding 20.59% (14/68) 1.25 0.001768 0.010437
GO:1901363 heterocyclic compound binding 20.59% (14/68) 1.2 0.002581 0.013153
GO:0036094 small molecule binding 20.59% (14/68) 1.18 0.002773 0.013942
GO:0071705 nitrogen compound transport 5.88% (4/68) 2.77 0.002879 0.014281
GO:0006091 generation of precursor metabolites and energy 4.41% (3/68) 3.39 0.002984 0.014603
GO:0032559 adenyl ribonucleotide binding 17.65% (12/68) 1.3 0.00307 0.014831
GO:0051641 cellular localization 5.88% (4/68) 2.73 0.003202 0.015273
GO:0046031 ADP metabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0046032 ADP catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0006096 glycolytic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0019364 pyridine nucleotide catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009181 purine ribonucleoside diphosphate catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009179 purine ribonucleoside diphosphate metabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009154 purine ribonucleotide catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009185 ribonucleoside diphosphate metabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009137 purine nucleoside diphosphate catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009191 ribonucleoside diphosphate catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009261 ribonucleotide catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009134 nucleoside diphosphate catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0006195 purine nucleotide catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0072523 purine-containing compound catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0009135 purine nucleoside diphosphate metabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0072526 pyridine-containing compound catabolic process 2.94% (2/68) 4.36 0.004333 0.017148
GO:0030554 adenyl nucleotide binding 17.65% (12/68) 1.23 0.004595 0.017993
GO:0009166 nucleotide catabolic process 2.94% (2/68) 4.31 0.004646 0.018005
GO:0009132 nucleoside diphosphate metabolic process 2.94% (2/68) 4.28 0.004807 0.018246
GO:0009250 glucan biosynthetic process 2.94% (2/68) 4.28 0.004807 0.018246
GO:0004478 methionine adenosyltransferase activity 1.47% (1/68) 7.55 0.005312 0.018643
GO:0019430 removal of superoxide radicals 1.47% (1/68) 7.55 0.005312 0.018643
GO:0009967 positive regulation of signal transduction 1.47% (1/68) 7.55 0.005312 0.018643
GO:0046500 S-adenosylmethionine metabolic process 1.47% (1/68) 7.55 0.005312 0.018643
GO:0006556 S-adenosylmethionine biosynthetic process 1.47% (1/68) 7.55 0.005312 0.018643
GO:0010647 positive regulation of cell communication 1.47% (1/68) 7.55 0.005312 0.018643
GO:0023056 positive regulation of signaling 1.47% (1/68) 7.55 0.005312 0.018643
GO:0003674 molecular_function 61.76% (42/68) 0.44 0.005511 0.01916
GO:1901292 nucleoside phosphate catabolic process 2.94% (2/68) 4.21 0.005303 0.019928
GO:0000271 polysaccharide biosynthetic process 2.94% (2/68) 4.09 0.006181 0.020903
GO:0046434 organophosphate catabolic process 2.94% (2/68) 4.09 0.006181 0.020903
GO:0005488 binding 44.12% (30/68) 0.6 0.006084 0.020955
GO:0006090 pyruvate metabolic process 2.94% (2/68) 3.99 0.00712 0.022638
GO:0004634 phosphopyruvate hydratase activity 1.47% (1/68) 7.14 0.007077 0.022695
GO:0030121 AP-1 adaptor complex 1.47% (1/68) 7.14 0.007077 0.022695
GO:0006900 vesicle budding from membrane 1.47% (1/68) 7.14 0.007077 0.022695
GO:0017053 transcription repressor complex 1.47% (1/68) 7.14 0.007077 0.022695
GO:0090114 COPII-coated vesicle budding 1.47% (1/68) 7.14 0.007077 0.022695
GO:0000015 phosphopyruvate hydratase complex 1.47% (1/68) 7.14 0.007077 0.022695
GO:0071702 organic substance transport 5.88% (4/68) 2.35 0.008008 0.025245
GO:0004791 thioredoxin-disulfide reductase (NADP) activity 1.47% (1/68) 6.82 0.008838 0.02763
GO:0003824 catalytic activity 36.76% (25/68) 0.65 0.009055 0.02807
GO:0046496 nicotinamide nucleotide metabolic process 2.94% (2/68) 3.78 0.009397 0.028653
GO:0046034 ATP metabolic process 2.94% (2/68) 3.78 0.009397 0.028653
GO:0019362 pyridine nucleotide metabolic process 2.94% (2/68) 3.75 0.009841 0.029764
GO:1901136 carbohydrate derivative catabolic process 2.94% (2/68) 3.71 0.010295 0.030885
GO:0030008 TRAPP complex 1.47% (1/68) 6.55 0.010597 0.03104
GO:0070534 protein K63-linked ubiquitination 1.47% (1/68) 6.55 0.010597 0.03104
GO:0016052 carbohydrate catabolic process 2.94% (2/68) 3.7 0.010525 0.031324
GO:0009144 purine nucleoside triphosphate metabolic process 2.94% (2/68) 3.66 0.010993 0.0317
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.94% (2/68) 3.66 0.010993 0.0317
GO:0072524 pyridine-containing compound metabolic process 2.94% (2/68) 3.65 0.01123 0.032135
GO:0044042 glucan metabolic process 2.94% (2/68) 3.62 0.011711 0.033255
GO:0009199 ribonucleoside triphosphate metabolic process 2.94% (2/68) 3.6 0.011955 0.03369
GO:0006487 protein N-linked glycosylation 1.47% (1/68) 6.33 0.012352 0.034037
GO:0098656 monoatomic anion transmembrane transport 1.47% (1/68) 6.33 0.012352 0.034037
GO:0008878 glucose-1-phosphate adenylyltransferase activity 1.47% (1/68) 6.33 0.012352 0.034037
GO:0031090 organelle membrane 2.94% (2/68) 3.54 0.012952 0.035427
GO:0009141 nucleoside triphosphate metabolic process 2.94% (2/68) 3.52 0.013207 0.035861
GO:0016051 carbohydrate biosynthetic process 2.94% (2/68) 3.51 0.013464 0.036294
GO:0009737 response to abscisic acid 1.47% (1/68) 6.14 0.014105 0.036692
GO:0098869 cellular oxidant detoxification 1.47% (1/68) 6.14 0.014105 0.036692
GO:0035304 regulation of protein dephosphorylation 1.47% (1/68) 6.14 0.014105 0.036692
GO:0097305 response to alcohol 1.47% (1/68) 6.14 0.014105 0.036692
GO:0043666 regulation of phosphoprotein phosphatase activity 1.47% (1/68) 6.14 0.014105 0.036692
GO:0043227 membrane-bounded organelle 5.88% (4/68) 2.08 0.014947 0.038347
GO:0043231 intracellular membrane-bounded organelle 5.88% (4/68) 2.08 0.014947 0.038347
GO:0080135 regulation of cellular response to stress 1.47% (1/68) 5.97 0.015854 0.039849
GO:0098754 detoxification 1.47% (1/68) 5.97 0.015854 0.039849
GO:1990748 cellular detoxification 1.47% (1/68) 5.97 0.015854 0.039849
GO:0006810 transport 10.29% (7/68) 1.41 0.016303 0.040702
GO:0034655 nucleobase-containing compound catabolic process 2.94% (2/68) 3.36 0.016433 0.040753
GO:0005741 mitochondrial outer membrane 1.47% (1/68) 5.82 0.0176 0.04224
GO:0030127 COPII vesicle coat 1.47% (1/68) 5.82 0.0176 0.04224
GO:0000209 protein polyubiquitination 1.47% (1/68) 5.82 0.0176 0.04224
GO:0016050 vesicle organization 1.47% (1/68) 5.82 0.0176 0.04224
GO:0010921 regulation of phosphatase activity 1.47% (1/68) 5.82 0.0176 0.04224
GO:0051234 establishment of localization 10.29% (7/68) 1.38 0.017813 0.042478
GO:0044270 cellular nitrogen compound catabolic process 2.94% (2/68) 3.23 0.019351 0.043365
GO:0000287 magnesium ion binding 2.94% (2/68) 3.22 0.019654 0.043519
GO:0046700 heterocycle catabolic process 2.94% (2/68) 3.22 0.019654 0.043519
GO:0035303 regulation of dephosphorylation 1.47% (1/68) 5.68 0.019343 0.04361
GO:0005794 Golgi apparatus 1.47% (1/68) 5.68 0.019343 0.04361
GO:0042575 DNA polymerase complex 1.47% (1/68) 5.68 0.019343 0.04361
GO:0006112 energy reserve metabolic process 1.47% (1/68) 5.68 0.019343 0.04361
GO:0048584 positive regulation of response to stimulus 1.47% (1/68) 5.68 0.019343 0.04361
GO:0070566 adenylyltransferase activity 1.47% (1/68) 5.68 0.019343 0.04361
GO:0005978 glycogen biosynthetic process 1.47% (1/68) 5.68 0.019343 0.04361
GO:0005977 glycogen metabolic process 1.47% (1/68) 5.68 0.019343 0.04361
GO:0006801 superoxide metabolic process 1.47% (1/68) 5.55 0.021083 0.04431
GO:0004743 pyruvate kinase activity 1.47% (1/68) 5.55 0.021083 0.04431
GO:0030955 potassium ion binding 1.47% (1/68) 5.55 0.021083 0.04431
GO:0031420 alkali metal ion binding 1.47% (1/68) 5.55 0.021083 0.04431
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.47% (1/68) 5.55 0.021083 0.04431
GO:0140492 metal-dependent deubiquitinase activity 1.47% (1/68) 5.55 0.021083 0.04431
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 1.47% (1/68) 5.55 0.021083 0.04431
GO:0070122 obsolete isopeptidase activity 1.47% (1/68) 5.55 0.021083 0.04431
GO:0051179 localization 10.29% (7/68) 1.36 0.018815 0.04458
GO:0005976 polysaccharide metabolic process 2.94% (2/68) 3.17 0.020886 0.045973
GO:0009150 purine ribonucleotide metabolic process 2.94% (2/68) 3.09 0.023117 0.048311
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (68) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms