Coexpression cluster: Cluster_19 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016741 transferase activity, transferring one-carbon groups 10.23% (9/88) 3.78 0.0 1e-05
GO:0006139 nucleobase-containing compound metabolic process 18.18% (16/88) 2.37 0.0 1e-05
GO:0000427 plastid-encoded plastid RNA polymerase complex 3.41% (3/88) 8.35 0.0 1e-05
GO:0046483 heterocycle metabolic process 18.18% (16/88) 2.24 0.0 2.1e-05
GO:0008168 methyltransferase activity 9.09% (8/88) 3.7 0.0 2.3e-05
GO:0006725 cellular aromatic compound metabolic process 18.18% (16/88) 2.19 0.0 2.7e-05
GO:1901360 organic cyclic compound metabolic process 18.18% (16/88) 2.16 0.0 3e-05
GO:0034641 cellular nitrogen compound metabolic process 19.32% (17/88) 2.03 1e-06 3.7e-05
GO:0090304 nucleic acid metabolic process 14.77% (13/88) 2.41 1e-06 4.9e-05
GO:0006396 RNA processing 9.09% (8/88) 3.25 2e-06 9.7e-05
GO:0000428 DNA-directed RNA polymerase complex 3.41% (3/88) 6.35 6e-06 0.000261
GO:0016070 RNA metabolic process 11.36% (10/88) 2.47 1.3e-05 0.000495
GO:0030880 RNA polymerase complex 3.41% (3/88) 5.96 1.5e-05 0.00052
GO:0009987 cellular process 37.5% (33/88) 1.02 2.1e-05 0.000678
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 2.27% (2/88) 7.77 3.1e-05 0.000873
GO:0004784 superoxide dismutase activity 2.27% (2/88) 7.77 3.1e-05 0.000873
GO:0008173 RNA methyltransferase activity 3.41% (3/88) 5.18 7.9e-05 0.002082
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.41% (3/88) 4.93 0.000135 0.003359
GO:0008152 metabolic process 34.09% (30/88) 0.95 0.000146 0.003436
GO:0044237 cellular metabolic process 26.14% (23/88) 1.13 0.000194 0.003778
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 2.27% (2/88) 6.6 0.000186 0.00378
GO:0045039 protein insertion into mitochondrial inner membrane 2.27% (2/88) 6.6 0.000186 0.00378
GO:0007007 inner mitochondrial membrane organization 2.27% (2/88) 6.6 0.000186 0.00378
GO:0007006 mitochondrial membrane organization 2.27% (2/88) 6.44 0.000232 0.004151
GO:0090151 establishment of protein localization to mitochondrial membrane 2.27% (2/88) 6.44 0.000232 0.004151
GO:0006801 superoxide metabolic process 2.27% (2/88) 6.18 0.000339 0.005837
GO:1901605 alpha-amino acid metabolic process 4.55% (4/88) 3.57 0.000377 0.006254
GO:0006807 nitrogen compound metabolic process 26.14% (23/88) 1.06 0.000429 0.006867
GO:0003824 catalytic activity 39.77% (35/88) 0.77 0.000448 0.006921
GO:0008150 biological_process 47.73% (42/88) 0.64 0.000535 0.007984
GO:0007005 mitochondrion organization 2.27% (2/88) 5.68 0.000693 0.010013
GO:0044281 small molecule metabolic process 9.09% (8/88) 2.03 0.000774 0.01084
GO:0072655 establishment of protein localization to mitochondrion 2.27% (2/88) 5.52 0.000869 0.011118
GO:0070585 protein localization to mitochondrion 2.27% (2/88) 5.52 0.000869 0.011118
GO:0005488 binding 45.45% (40/88) 0.64 0.000846 0.011492
GO:0003674 molecular_function 62.5% (55/88) 0.45 0.001093 0.013607
GO:0044238 primary metabolic process 28.41% (25/88) 0.9 0.001171 0.014183
GO:0061024 membrane organization 2.27% (2/88) 5.24 0.001277 0.01506
GO:0140098 catalytic activity, acting on RNA 5.68% (5/88) 2.58 0.001544 0.017741
GO:1901607 alpha-amino acid biosynthetic process 3.41% (3/88) 3.69 0.001656 0.018547
GO:0071704 organic substance metabolic process 29.55% (26/88) 0.84 0.001704 0.018614
GO:0140640 catalytic activity, acting on a nucleic acid 6.82% (6/88) 2.23 0.001799 0.019194
GO:0051668 localization within membrane 2.27% (2/88) 4.81 0.00232 0.02038
GO:0004585 ornithine carbamoyltransferase activity 1.14% (1/88) 8.77 0.002296 0.020569
GO:0090228 positive regulation of red or far-red light signaling pathway 1.14% (1/88) 8.77 0.002296 0.020569
GO:0015450 protein-transporting ATPase activity 1.14% (1/88) 8.77 0.002296 0.020569
GO:0090227 regulation of red or far-red light signaling pathway 1.14% (1/88) 8.77 0.002296 0.020569
GO:0008360 regulation of cell shape 1.14% (1/88) 8.77 0.002296 0.020569
GO:0072657 protein localization to membrane 2.27% (2/88) 4.91 0.002032 0.020686
GO:0090150 establishment of protein localization to membrane 2.27% (2/88) 4.91 0.002032 0.020686
GO:0008652 amino acid biosynthetic process 3.41% (3/88) 3.53 0.002281 0.022709
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 3.41% (3/88) 3.42 0.002834 0.024416
GO:0019867 outer membrane 2.27% (2/88) 4.6 0.00312 0.026372
GO:0003991 acetylglutamate kinase activity 1.14% (1/88) 7.77 0.004586 0.034823
GO:0016597 amino acid binding 1.14% (1/88) 7.77 0.004586 0.034823
GO:0016743 carboxyl- or carbamoyltransferase activity 1.14% (1/88) 7.77 0.004586 0.034823
GO:0006839 mitochondrial transport 2.27% (2/88) 4.37 0.004226 0.03506
GO:0098800 inner mitochondrial membrane protein complex 2.27% (2/88) 4.28 0.004838 0.035528
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 3.41% (3/88) 3.19 0.004425 0.036044
GO:0016887 ATP hydrolysis activity 4.55% (4/88) 2.56 0.004829 0.036057
GO:1990234 transferase complex 3.41% (3/88) 3.18 0.004512 0.036095
GO:0006886 intracellular protein transport 3.41% (3/88) 3.09 0.005339 0.038578
GO:0006520 amino acid metabolic process 4.55% (4/88) 2.49 0.005809 0.041307
GO:0051353 positive regulation of oxidoreductase activity 1.14% (1/88) 7.18 0.006871 0.042169
GO:0051341 regulation of oxidoreductase activity 1.14% (1/88) 7.18 0.006871 0.042169
GO:1901671 positive regulation of superoxide dismutase activity 1.14% (1/88) 7.18 0.006871 0.042169
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 1.14% (1/88) 7.18 0.006871 0.042169
GO:0009967 positive regulation of signal transduction 1.14% (1/88) 7.18 0.006871 0.042169
GO:0023056 positive regulation of signaling 1.14% (1/88) 7.18 0.006871 0.042169
GO:0010647 positive regulation of cell communication 1.14% (1/88) 7.18 0.006871 0.042169
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity 1.14% (1/88) 7.18 0.006871 0.042169
GO:1901668 regulation of superoxide dismutase activity 1.14% (1/88) 7.18 0.006871 0.042169
GO:0003723 RNA binding 6.82% (6/88) 1.81 0.007401 0.044807
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.68% (5/88) 2.04 0.007589 0.045332
GO:0016817 hydrolase activity, acting on acid anhydrides 5.68% (5/88) 2.03 0.007707 0.045428
GO:0005575 cellular_component 18.18% (16/88) 0.97 0.006584 0.046085
GO:0098798 mitochondrial protein-containing complex 2.27% (2/88) 3.91 0.007923 0.046097
GO:0019752 carboxylic acid metabolic process 5.68% (5/88) 2.01 0.008189 0.047035
GO:0006082 organic acid metabolic process 5.68% (5/88) 2.0 0.008438 0.047253
GO:0043436 oxoacid metabolic process 5.68% (5/88) 2.0 0.008375 0.047496
GO:0140535 intracellular protein-containing complex 3.41% (3/88) 2.82 0.008987 0.0491
GO:2000030 regulation of response to red or far red light 1.14% (1/88) 6.77 0.009151 0.049395
GO:0097159 organic cyclic compound binding 27.27% (24/88) 0.7 0.008985 0.049693
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (88) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms