Coexpression cluster: Cluster_153 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0047918 GDP-mannose 3,5-epimerase activity 4.84% (3/62) 9.27 0.0 1e-06
GO:0005982 starch metabolic process 4.84% (3/62) 9.27 0.0 1e-06
GO:0003824 catalytic activity 54.84% (34/62) 1.23 0.0 8e-06
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives 4.84% (3/62) 7.27 1e-06 5.7e-05
GO:0016854 racemase and epimerase activity 4.84% (3/62) 6.95 2e-06 9.5e-05
GO:0006520 amino acid metabolic process 9.68% (6/62) 3.58 1.1e-05 0.000498
GO:0046838 obsolete phosphorylated carbohydrate dephosphorylation 3.23% (2/62) 8.27 1.5e-05 0.000577
GO:0034660 ncRNA metabolic process 8.06% (5/62) 3.83 2.8e-05 0.000905
GO:0044281 small molecule metabolic process 12.9% (8/62) 2.54 6.7e-05 0.001965
GO:0006082 organic acid metabolic process 9.68% (6/62) 2.77 0.000249 0.005441
GO:0043436 oxoacid metabolic process 9.68% (6/62) 2.77 0.000247 0.005877
GO:0019752 carboxylic acid metabolic process 9.68% (6/62) 2.78 0.00024 0.006276
GO:0016853 isomerase activity 6.45% (4/62) 3.59 0.000354 0.006626
GO:0051287 NAD binding 4.84% (3/62) 4.46 0.00035 0.007047
GO:0044042 glucan metabolic process 4.84% (3/62) 4.33 0.000457 0.007975
GO:0019203 carbohydrate phosphatase activity 3.23% (2/62) 5.88 0.00053 0.008166
GO:0051539 4 iron, 4 sulfur cluster binding 3.23% (2/62) 5.88 0.00053 0.008166
GO:0005975 carbohydrate metabolic process 9.68% (6/62) 2.43 0.000863 0.012566
GO:0044283 small molecule biosynthetic process 6.45% (4/62) 3.19 0.000988 0.013618
GO:0005976 polysaccharide metabolic process 4.84% (3/62) 3.89 0.001112 0.014572
GO:0052624 2-phytyl-1,4-naphthoquinone methyltransferase activity 1.61% (1/62) 9.27 0.001617 0.014612
GO:0010027 thylakoid membrane organization 1.61% (1/62) 9.27 0.001617 0.014612
GO:0019156 isoamylase activity 1.61% (1/62) 9.27 0.001617 0.014612
GO:0005983 starch catabolic process 1.61% (1/62) 9.27 0.001617 0.014612
GO:0003861 3-isopropylmalate dehydratase activity 1.61% (1/62) 9.27 0.001617 0.014612
GO:0019252 starch biosynthetic process 1.61% (1/62) 9.27 0.001617 0.014612
GO:0009668 plastid membrane organization 1.61% (1/62) 9.27 0.001617 0.014612
GO:0006399 tRNA metabolic process 4.84% (3/62) 3.81 0.001301 0.016233
GO:0050497 alkylthioltransferase activity 1.61% (1/62) 8.27 0.003232 0.017282
GO:0046422 violaxanthin de-epoxidase activity 1.61% (1/62) 8.27 0.003232 0.017282
GO:0004816 asparagine-tRNA ligase activity 1.61% (1/62) 8.27 0.003232 0.017282
GO:0035596 methylthiotransferase activity 1.61% (1/62) 8.27 0.003232 0.017282
GO:0010028 xanthophyll cycle 1.61% (1/62) 8.27 0.003232 0.017282
GO:0006421 asparaginyl-tRNA aminoacylation 1.61% (1/62) 8.27 0.003232 0.017282
GO:0016122 xanthophyll metabolic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0008934 inositol monophosphate 1-phosphatase activity 1.61% (1/62) 8.27 0.003232 0.017282
GO:0042371 vitamin K biosynthetic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0006775 fat-soluble vitamin metabolic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0042362 fat-soluble vitamin biosynthetic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0042373 vitamin K metabolic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0042374 phylloquinone metabolic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0009251 glucan catabolic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0042372 phylloquinone biosynthetic process 1.61% (1/62) 8.27 0.003232 0.017282
GO:0052834 inositol monophosphate phosphatase activity 1.61% (1/62) 8.27 0.003232 0.017282
GO:0034470 ncRNA processing 4.84% (3/62) 3.73 0.00154 0.018342
GO:0003674 molecular_function 64.52% (40/62) 0.5 0.002156 0.01883
GO:0008152 metabolic process 32.26% (20/62) 0.87 0.003679 0.01928
GO:0009072 aromatic amino acid metabolic process 3.23% (2/62) 4.41 0.004013 0.020618
GO:0071704 organic substance metabolic process 30.65% (19/62) 0.89 0.004342 0.021878
GO:0016874 ligase activity 4.84% (3/62) 3.45 0.002675 0.022606
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.61% (1/62) 7.69 0.004844 0.023504
GO:0008169 C-methyltransferase activity 1.61% (1/62) 7.69 0.004844 0.023504
GO:0006418 tRNA aminoacylation for protein translation 3.23% (2/62) 4.16 0.005632 0.023798
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.23% (2/62) 4.16 0.005632 0.023798
GO:0043039 tRNA aminoacylation 3.23% (2/62) 4.16 0.005632 0.023798
GO:0004812 aminoacyl-tRNA ligase activity 3.23% (2/62) 4.16 0.005632 0.023798
GO:0043038 amino acid activation 3.23% (2/62) 4.16 0.005632 0.023798
GO:0006725 cellular aromatic compound metabolic process 12.9% (8/62) 1.69 0.003139 0.02492
GO:0044237 cellular metabolic process 24.19% (15/62) 1.02 0.005286 0.025179
GO:0016053 organic acid biosynthetic process 4.84% (3/62) 3.08 0.005497 0.025268
GO:0046394 carboxylic acid biosynthetic process 4.84% (3/62) 3.08 0.005497 0.025268
GO:0009308 amine metabolic process 3.23% (2/62) 4.6 0.003118 0.025531
GO:0006432 phenylalanyl-tRNA aminoacylation 1.61% (1/62) 7.27 0.006454 0.025621
GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity 1.61% (1/62) 7.27 0.006454 0.025621
GO:0004826 phenylalanine-tRNA ligase activity 1.61% (1/62) 7.27 0.006454 0.025621
GO:0006364 rRNA processing 3.23% (2/62) 4.08 0.006282 0.026127
GO:0007623 circadian rhythm 1.61% (1/62) 6.95 0.008061 0.030172
GO:0048511 rhythmic process 1.61% (1/62) 6.95 0.008061 0.030172
GO:0006007 glucose catabolic process 1.61% (1/62) 6.95 0.008061 0.030172
GO:0051536 iron-sulfur cluster binding 3.23% (2/62) 3.86 0.008429 0.030672
GO:0051540 metal cluster binding 3.23% (2/62) 3.86 0.008429 0.030672
GO:0016072 rRNA metabolic process 3.23% (2/62) 3.91 0.007865 0.030757
GO:0016070 RNA metabolic process 8.06% (5/62) 1.98 0.008848 0.031326
GO:0016052 carbohydrate catabolic process 3.23% (2/62) 3.83 0.008814 0.031635
GO:0016791 phosphatase activity 4.84% (3/62) 2.8 0.009243 0.032289
GO:0044238 primary metabolic process 27.42% (17/62) 0.85 0.009832 0.032606
GO:0046483 heterocycle metabolic process 11.29% (7/62) 1.55 0.009746 0.032737
GO:0046365 monosaccharide catabolic process 1.61% (1/62) 6.69 0.009666 0.032888
GO:0019320 hexose catabolic process 1.61% (1/62) 6.69 0.009666 0.032888
GO:0009058 biosynthetic process 11.29% (7/62) 1.52 0.010769 0.035268
GO:0140101 catalytic activity, acting on a tRNA 3.23% (2/62) 3.61 0.011728 0.037934
GO:0004619 phosphoglycerate mutase activity 1.61% (1/62) 6.27 0.012867 0.040616
GO:1901360 organic cyclic compound metabolic process 11.29% (7/62) 1.47 0.012755 0.040753
GO:0008652 amino acid biosynthetic process 3.23% (2/62) 3.45 0.014515 0.041336
GO:0009085 lysine biosynthetic process 1.61% (1/62) 6.1 0.014464 0.041643
GO:0004425 indole-3-glycerol-phosphate synthase activity 1.61% (1/62) 6.1 0.014464 0.041643
GO:0009089 lysine biosynthetic process via diaminopimelate 1.61% (1/62) 6.1 0.014464 0.041643
GO:0016116 carotenoid metabolic process 1.61% (1/62) 6.1 0.014464 0.041643
GO:0016108 tetraterpenoid metabolic process 1.61% (1/62) 6.1 0.014464 0.041643
GO:0006553 lysine metabolic process 1.61% (1/62) 6.1 0.014464 0.041643
GO:0046451 diaminopimelate metabolic process 1.61% (1/62) 6.1 0.014464 0.041643
GO:0046854 phosphatidylinositol phosphate biosynthetic process 1.61% (1/62) 5.95 0.016058 0.042931
GO:1901663 quinone biosynthetic process 1.61% (1/62) 5.95 0.016058 0.042931
GO:1901661 quinone metabolic process 1.61% (1/62) 5.95 0.016058 0.042931
GO:0019139 cytokinin dehydrogenase activity 1.61% (1/62) 5.95 0.016058 0.042931
GO:0042181 ketone biosynthetic process 1.61% (1/62) 5.95 0.016058 0.042931
GO:0042578 phosphoric ester hydrolase activity 4.84% (3/62) 2.58 0.01406 0.043853
GO:0016491 oxidoreductase activity 11.29% (7/62) 1.41 0.015608 0.04397
GO:0044249 cellular biosynthetic process 9.68% (6/62) 1.52 0.017917 0.047417
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (62) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms