Coexpression cluster: Cluster_54 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0004672 protein kinase activity 12.5% (12/96) 1.69 0.00034 0.008779
GO:0016192 vesicle-mediated transport 5.21% (5/96) 3.04 0.000369 0.008869
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway 2.08% (2/96) 6.06 0.000403 0.009092
GO:0015693 magnesium ion transport 2.08% (2/96) 6.18 0.000336 0.009341
GO:0000139 Golgi membrane 2.08% (2/96) 6.18 0.000336 0.009341
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway 2.08% (2/96) 6.18 0.000336 0.009341
GO:0015095 magnesium ion transmembrane transporter activity 2.08% (2/96) 6.18 0.000336 0.009341
GO:0045324 late endosome to vacuole transport 2.08% (2/96) 5.94 0.000475 0.010097
GO:0032509 endosome transport via multivesicular body sorting pathway 2.08% (2/96) 5.83 0.000554 0.011107
GO:0072665 protein localization to vacuole 2.08% (2/96) 5.64 0.000728 0.011945
GO:0072666 establishment of protein localization to vacuole 2.08% (2/96) 5.64 0.000728 0.011945
GO:0016772 transferase activity, transferring phosphorus-containing groups 13.54% (13/96) 1.46 0.000832 0.012011
GO:0060589 nucleoside-triphosphatase regulator activity 3.12% (3/96) 4.06 0.000801 0.012046
GO:0030695 GTPase regulator activity 3.12% (3/96) 4.06 0.000801 0.012046
GO:0003824 catalytic activity 38.54% (37/96) 0.72 0.00064 0.012152
GO:0003674 molecular_function 63.54% (61/96) 0.48 0.000317 0.012725
GO:0008289 lipid binding 4.17% (4/96) 3.22 0.000923 0.012812
GO:0016773 phosphotransferase activity, alcohol group as acceptor 12.5% (12/96) 1.57 0.000724 0.013062
GO:0016301 kinase activity 12.5% (12/96) 1.51 0.001002 0.013397
GO:0016310 phosphorylation 12.5% (12/96) 1.7 0.000313 0.014108
GO:0016602 CCAAT-binding factor complex 2.08% (2/96) 5.32 0.001145 0.014254
GO:0071985 multivesicular body sorting pathway 2.08% (2/96) 5.32 0.001145 0.014254
GO:0006810 transport 11.46% (11/96) 1.56 0.001263 0.015199
GO:0016197 endosomal transport 2.08% (2/96) 5.12 0.001517 0.015215
GO:0016740 transferase activity 21.88% (21/96) 1.17 0.000297 0.015302
GO:0071705 nitrogen compound transport 5.21% (5/96) 2.59 0.001499 0.015457
GO:0051179 localization 11.46% (11/96) 1.52 0.001591 0.015525
GO:0043130 ubiquitin binding 2.08% (2/96) 5.18 0.001388 0.015654
GO:0032182 ubiquitin-like protein binding 2.08% (2/96) 5.18 0.001388 0.015654
GO:1901264 carbohydrate derivative transport 2.08% (2/96) 5.06 0.001653 0.015699
GO:0043412 macromolecule modification 14.58% (14/96) 1.31 0.00148 0.015713
GO:0051234 establishment of localization 11.46% (11/96) 1.53 0.001457 0.015939
GO:0006468 protein phosphorylation 12.5% (12/96) 1.72 0.000278 0.016725
GO:0061630 ubiquitin protein ligase activity 3.12% (3/96) 3.63 0.001892 0.017517
GO:0061659 ubiquitin-like protein ligase activity 3.12% (3/96) 3.61 0.001949 0.017587
GO:0036211 protein modification process 13.54% (13/96) 1.31 0.002102 0.018068
GO:0043419 urea catabolic process 1.04% (1/96) 8.64 0.002504 0.018081
GO:0035550 urease complex 1.04% (1/96) 8.64 0.002504 0.018081
GO:0019627 urea metabolic process 1.04% (1/96) 8.64 0.002504 0.018081
GO:0009039 urease activity 1.04% (1/96) 8.64 0.002504 0.018081
GO:0035639 purine ribonucleoside triphosphate binding 15.62% (15/96) 1.2 0.002062 0.018156
GO:0008150 biological_process 44.79% (43/96) 0.55 0.00227 0.018208
GO:0007034 vacuolar transport 2.08% (2/96) 4.73 0.002579 0.018256
GO:0005085 guanyl-nucleotide exchange factor activity 2.08% (2/96) 4.83 0.002249 0.018448
GO:0016790 thiolester hydrolase activity 2.08% (2/96) 4.83 0.002249 0.018448
GO:0005524 ATP binding 14.58% (14/96) 1.23 0.002382 0.018694
GO:0005338 nucleotide-sugar transmembrane transporter activity 2.08% (2/96) 6.32 0.000276 0.019903
GO:0015780 nucleotide-sugar transmembrane transport 2.08% (2/96) 6.32 0.000276 0.019903
GO:0006796 phosphate-containing compound metabolic process 12.5% (12/96) 1.31 0.003171 0.022017
GO:0006793 phosphorus metabolic process 12.5% (12/96) 1.31 0.003238 0.022057
GO:0035091 phosphatidylinositol binding 2.08% (2/96) 4.51 0.003499 0.023393
GO:0006812 monoatomic cation transport 4.17% (4/96) 2.69 0.003566 0.023409
GO:0140096 catalytic activity, acting on a protein 17.71% (17/96) 1.4 0.000202 0.024362
GO:0008324 monoatomic cation transmembrane transporter activity 4.17% (4/96) 2.58 0.004692 0.029714
GO:0017076 purine nucleotide binding 16.67% (16/96) 1.03 0.00469 0.030233
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport 2.08% (2/96) 6.64 0.000172 0.031061
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 2.08% (2/96) 6.64 0.000172 0.031061
GO:0043605 amide catabolic process 1.04% (1/96) 7.64 0.005002 0.031136
GO:0098588 bounding membrane of organelle 2.08% (2/96) 4.22 0.005242 0.03154
GO:0071702 organic substance transport 5.21% (5/96) 2.17 0.005212 0.031893
GO:0015931 nucleobase-containing compound transport 2.08% (2/96) 4.18 0.005483 0.031924
GO:0030554 adenyl nucleotide binding 15.62% (15/96) 1.05 0.005461 0.032319
GO:1901505 carbohydrate derivative transmembrane transporter activity 2.08% (2/96) 4.12 0.005979 0.032704
GO:0015932 nucleobase-containing compound transmembrane transporter activity 2.08% (2/96) 4.12 0.005979 0.032704
GO:0006811 monoatomic ion transport 4.17% (4/96) 2.49 0.005748 0.032936
GO:0046873 metal ion transmembrane transporter activity 3.12% (3/96) 3.04 0.005971 0.033681
GO:0030001 metal ion transport 3.12% (3/96) 3.01 0.006315 0.034028
GO:0090575 RNA polymerase II transcription regulator complex 2.08% (2/96) 3.94 0.007586 0.034665
GO:0120252 hydrocarbon metabolic process 1.04% (1/96) 7.06 0.007494 0.034685
GO:0008352 katanin complex 1.04% (1/96) 7.06 0.007494 0.034685
GO:0052615 ent-kaurene oxidase activity 1.04% (1/96) 7.06 0.007494 0.034685
GO:0010241 ent-kaurene oxidation to kaurenoic acid 1.04% (1/96) 7.06 0.007494 0.034685
GO:0009686 gibberellin biosynthetic process 1.04% (1/96) 7.06 0.007494 0.034685
GO:0042214 terpene metabolic process 1.04% (1/96) 7.06 0.007494 0.034685
GO:0009685 gibberellin metabolic process 1.04% (1/96) 7.06 0.007494 0.034685
GO:0033331 ent-kaurene metabolic process 1.04% (1/96) 7.06 0.007494 0.034685
GO:0032553 ribonucleotide binding 15.62% (15/96) 0.99 0.007999 0.035217
GO:0000166 nucleotide binding 16.67% (16/96) 0.95 0.007918 0.03529
GO:1901265 nucleoside phosphate binding 16.67% (16/96) 0.95 0.007918 0.03529
GO:0006886 intracellular protein transport 3.12% (3/96) 2.97 0.006793 0.036061
GO:0044238 primary metabolic process 25.0% (24/96) 0.71 0.008631 0.036657
GO:0032555 purine ribonucleotide binding 15.62% (15/96) 1.01 0.00715 0.036874
GO:0043168 anion binding 16.67% (16/96) 0.93 0.008794 0.036914
GO:0097367 carbohydrate derivative binding 15.62% (15/96) 0.98 0.008601 0.036964
GO:0032559 adenyl ribonucleotide binding 14.58% (14/96) 1.02 0.008543 0.037155
GO:0009987 cellular process 29.17% (28/96) 0.66 0.007147 0.037392
GO:0019538 protein metabolic process 15.62% (15/96) 0.97 0.009134 0.037901
GO:0015075 monoatomic ion transmembrane transporter activity 4.17% (4/96) 2.29 0.009245 0.037926
GO:0051013 microtubule severing 1.04% (1/96) 6.64 0.00998 0.040031
GO:0016151 nickel cation binding 1.04% (1/96) 6.64 0.00998 0.040031
GO:0005543 phospholipid binding 2.08% (2/96) 3.66 0.010976 0.043541
GO:1901363 heterocyclic compound binding 16.67% (16/96) 0.89 0.011446 0.044913
GO:0071941 nitrogen cycle metabolic process 1.04% (1/96) 6.32 0.01246 0.045897
GO:0035514 DNA demethylase activity 1.04% (1/96) 6.32 0.01246 0.045897
GO:0080111 DNA demethylation 1.04% (1/96) 6.32 0.01246 0.045897
GO:0035510 DNA dealkylation 1.04% (1/96) 6.32 0.01246 0.045897
GO:0072594 establishment of protein localization to organelle 2.08% (2/96) 3.55 0.012699 0.046307
GO:0071704 organic substance metabolic process 26.04% (25/96) 0.65 0.012085 0.046911
GO:0036094 small molecule binding 16.67% (16/96) 0.88 0.01227 0.047122
GO:0033365 protein localization to organelle 2.08% (2/96) 3.53 0.013057 0.047137
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (96) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms