Coexpression cluster: Cluster_158 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0140640 catalytic activity, acting on a nucleic acid 11.9% (15/126) 3.04 0.0 0.0
GO:0140657 ATP-dependent activity 10.32% (13/126) 3.04 0.0 1e-06
GO:0140658 ATP-dependent chromatin remodeler activity 4.76% (6/126) 5.41 0.0 1e-06
GO:0005515 protein binding 27.78% (35/126) 1.34 0.0 1.1e-05
GO:0019222 regulation of metabolic process 15.87% (20/126) 1.98 0.0 1.1e-05
GO:0005488 binding 51.59% (65/126) 0.82 0.0 1.1e-05
GO:0031323 regulation of cellular metabolic process 15.87% (20/126) 2.0 0.0 1.2e-05
GO:0032991 protein-containing complex 13.49% (17/126) 2.17 0.0 1.4e-05
GO:0008094 ATP-dependent activity, acting on DNA 4.76% (6/126) 4.34 1e-06 2.8e-05
GO:0060255 regulation of macromolecule metabolic process 15.08% (19/126) 1.92 1e-06 3e-05
GO:0140097 catalytic activity, acting on DNA 5.56% (7/126) 3.78 1e-06 3.6e-05
GO:0009889 regulation of biosynthetic process 14.29% (18/126) 1.9 1e-06 4.3e-05
GO:0031326 regulation of cellular biosynthetic process 14.29% (18/126) 1.9 1e-06 4.3e-05
GO:0016071 mRNA metabolic process 5.56% (7/126) 3.71 1e-06 4.7e-05
GO:0010556 regulation of macromolecule biosynthetic process 14.29% (18/126) 1.91 1e-06 4.8e-05
GO:0010468 regulation of gene expression 14.29% (18/126) 1.91 1e-06 5.1e-05
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 2.38% (3/126) 6.83 2e-06 5.2e-05
GO:0004386 helicase activity 4.76% (6/126) 4.01 2e-06 5.4e-05
GO:0050794 regulation of cellular process 16.67% (21/126) 1.63 4e-06 9.4e-05
GO:0005524 ATP binding 17.46% (22/126) 1.49 1e-05 0.000214
GO:0050789 regulation of biological process 16.67% (21/126) 1.54 1e-05 0.000223
GO:0016070 RNA metabolic process 9.52% (12/126) 2.22 1.2e-05 0.000244
GO:0065007 biological regulation 16.67% (21/126) 1.5 1.4e-05 0.000283
GO:0080090 regulation of primary metabolic process 12.7% (16/126) 1.75 2.2e-05 0.000408
GO:0051171 regulation of nitrogen compound metabolic process 12.7% (16/126) 1.76 2.2e-05 0.000411
GO:0000956 nuclear-transcribed mRNA catabolic process 2.38% (3/126) 5.51 3.8e-05 0.000668
GO:0035639 purine ribonucleoside triphosphate binding 17.46% (22/126) 1.36 4e-05 0.00068
GO:0090304 nucleic acid metabolic process 10.32% (13/126) 1.89 5.3e-05 0.000867
GO:0005575 cellular_component 20.63% (26/126) 1.16 8e-05 0.00126
GO:0008150 biological_process 46.83% (59/126) 0.62 9e-05 0.001289
GO:0032559 adenyl ribonucleotide binding 17.46% (22/126) 1.28 8.9e-05 0.001309
GO:0003674 molecular_function 62.7% (79/126) 0.46 8.8e-05 0.00134
GO:0016592 mediator complex 2.38% (3/126) 5.03 0.000107 0.001441
GO:0030015 CCR4-NOT core complex 1.59% (2/126) 6.93 0.000106 0.001478
GO:0006402 mRNA catabolic process 2.38% (3/126) 4.98 0.000119 0.001557
GO:0006355 regulation of DNA-templated transcription 11.11% (14/126) 1.67 0.000134 0.001656
GO:2001141 regulation of RNA biosynthetic process 11.11% (14/126) 1.67 0.000134 0.001656
GO:0006139 nucleobase-containing compound metabolic process 11.11% (14/126) 1.66 0.000145 0.001697
GO:0051252 regulation of RNA metabolic process 11.11% (14/126) 1.66 0.000143 0.001729
GO:0019219 regulation of nucleobase-containing compound metabolic process 11.11% (14/126) 1.65 0.000155 0.001773
GO:0030554 adenyl nucleotide binding 17.46% (22/126) 1.21 0.000182 0.00203
GO:0010629 negative regulation of gene expression 3.17% (4/126) 3.82 0.000192 0.002092
GO:0043167 ion binding 25.4% (32/126) 0.92 0.000231 0.002405
GO:0008270 zinc ion binding 7.14% (9/126) 2.13 0.000231 0.002457
GO:0032555 purine ribonucleotide binding 17.46% (22/126) 1.17 0.000277 0.002816
GO:0032553 ribonucleotide binding 17.46% (22/126) 1.15 0.00033 0.003284
GO:0140535 intracellular protein-containing complex 3.97% (5/126) 3.04 0.000378 0.003531
GO:0006401 RNA catabolic process 2.38% (3/126) 4.41 0.000389 0.00356
GO:0046483 heterocycle metabolic process 11.11% (14/126) 1.53 0.000376 0.00359
GO:0097367 carbohydrate derivative binding 17.46% (22/126) 1.14 0.000369 0.0036
GO:0006725 cellular aromatic compound metabolic process 11.11% (14/126) 1.48 0.000519 0.004665
GO:0006074 (1->3)-beta-D-glucan metabolic process 1.59% (2/126) 5.79 0.000578 0.004729
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 1.59% (2/126) 5.79 0.000578 0.004729
GO:0003843 1,3-beta-D-glucan synthase activity 1.59% (2/126) 5.79 0.000578 0.004729
GO:0000148 1,3-beta-D-glucan synthase complex 1.59% (2/126) 5.79 0.000578 0.004729
GO:0017076 purine nucleotide binding 17.46% (22/126) 1.1 0.00054 0.004753
GO:0043170 macromolecule metabolic process 21.43% (27/126) 0.94 0.000634 0.005009
GO:1901360 organic cyclic compound metabolic process 11.11% (14/126) 1.45 0.000632 0.00508
GO:0008186 ATP-dependent activity, acting on RNA 2.38% (3/126) 4.11 0.00072 0.005499
GO:0003724 RNA helicase activity 2.38% (3/126) 4.11 0.00072 0.005499
GO:0010558 negative regulation of macromolecule biosynthetic process 3.17% (4/126) 3.18 0.001028 0.00724
GO:0009890 negative regulation of biosynthetic process 3.17% (4/126) 3.18 0.001028 0.00724
GO:0031327 negative regulation of cellular biosynthetic process 3.17% (4/126) 3.18 0.001028 0.00724
GO:0006397 mRNA processing 3.17% (4/126) 3.19 0.000999 0.007383
GO:0016570 histone modification 2.38% (3/126) 3.95 0.000985 0.007399
GO:0003712 transcription coregulator activity 2.38% (3/126) 3.88 0.001138 0.007555
GO:1901265 nucleoside phosphate binding 17.46% (22/126) 1.02 0.001126 0.007584
GO:0000166 nucleotide binding 17.46% (22/126) 1.02 0.001126 0.007584
GO:0005694 chromosome 1.59% (2/126) 5.34 0.001094 0.007594
GO:0043168 anion binding 17.46% (22/126) 1.0 0.001305 0.008537
GO:1990234 transferase complex 3.17% (4/126) 3.08 0.00134 0.008647
GO:0006338 chromatin remodeling 2.38% (3/126) 3.7 0.001616 0.01014
GO:0031324 negative regulation of cellular metabolic process 3.17% (4/126) 3.01 0.001596 0.01015
GO:0010605 negative regulation of macromolecule metabolic process 3.17% (4/126) 2.98 0.001715 0.010471
GO:0009892 negative regulation of metabolic process 3.17% (4/126) 2.98 0.001715 0.010471
GO:1901363 heterocyclic compound binding 17.46% (22/126) 0.96 0.00189 0.01139
GO:0140513 nuclear protein-containing complex 3.97% (5/126) 2.51 0.001944 0.011563
GO:0036094 small molecule binding 17.46% (22/126) 0.95 0.002084 0.012083
GO:0005634 nucleus 4.76% (6/126) 2.2 0.002063 0.012111
GO:0006325 chromatin organization 2.38% (3/126) 3.55 0.002204 0.012616
GO:0034641 cellular nitrogen compound metabolic process 11.11% (14/126) 1.24 0.00252 0.01425
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 1.59% (2/126) 4.73 0.002592 0.014476
GO:0016571 histone methylation 1.59% (2/126) 4.66 0.002821 0.015202
GO:0034968 histone lysine methylation 1.59% (2/126) 4.66 0.002821 0.015202
GO:0098797 plasma membrane protein complex 1.59% (2/126) 4.66 0.002821 0.015202
GO:0000123 histone acetyltransferase complex 1.59% (2/126) 4.61 0.00306 0.016297
GO:0004651 polynucleotide 5'-phosphatase activity 0.79% (1/126) 8.25 0.003287 0.016727
GO:0004484 mRNA guanylyltransferase activity 0.79% (1/126) 8.25 0.003287 0.016727
GO:0010252 obsolete auxin homeostasis 0.79% (1/126) 8.25 0.003287 0.016727
GO:0042800 histone H3K4 methyltransferase activity 0.79% (1/126) 8.25 0.003287 0.016727
GO:0018022 peptidyl-lysine methylation 1.59% (2/126) 4.49 0.003565 0.017943
GO:0071824 protein-DNA complex organization 2.38% (3/126) 3.28 0.003738 0.018408
GO:0009987 cellular process 28.57% (36/126) 0.63 0.003698 0.018409
GO:0031248 protein acetyltransferase complex 1.59% (2/126) 4.44 0.003831 0.018469
GO:1902493 acetyltransferase complex 1.59% (2/126) 4.44 0.003831 0.018469
GO:0016311 dephosphorylation 2.38% (3/126) 3.23 0.004082 0.019475
GO:0016043 cellular component organization 5.56% (7/126) 1.79 0.004289 0.020249
GO:0048523 negative regulation of cellular process 3.17% (4/126) 2.6 0.004463 0.020859
GO:0048519 negative regulation of biological process 3.17% (4/126) 2.51 0.005562 0.025729
GO:0034655 nucleobase-containing compound catabolic process 2.38% (3/126) 3.05 0.005794 0.026535
GO:0040029 epigenetic regulation of gene expression 1.59% (2/126) 4.12 0.005941 0.026938
GO:0000082 G1/S transition of mitotic cell cycle 0.79% (1/126) 7.25 0.006563 0.02708
GO:0006370 7-methylguanosine mRNA capping 0.79% (1/126) 7.25 0.006563 0.02708
GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process 0.79% (1/126) 7.25 0.006563 0.02708
GO:0044770 cell cycle phase transition 0.79% (1/126) 7.25 0.006563 0.02708
GO:1990112 RQC complex 0.79% (1/126) 7.25 0.006563 0.02708
GO:0042054 histone methyltransferase activity 0.79% (1/126) 7.25 0.006563 0.02708
GO:0140938 histone H3 methyltransferase activity 0.79% (1/126) 7.25 0.006563 0.02708
GO:0044772 mitotic cell cycle phase transition 0.79% (1/126) 7.25 0.006563 0.02708
GO:0044843 cell cycle G1/S phase transition 0.79% (1/126) 7.25 0.006563 0.02708
GO:0008192 RNA guanylyltransferase activity 0.79% (1/126) 7.25 0.006563 0.02708
GO:0006357 regulation of transcription by RNA polymerase II 2.38% (3/126) 2.95 0.007031 0.028751
GO:0140098 catalytic activity, acting on RNA 3.97% (5/126) 2.06 0.007197 0.028914
GO:0006807 nitrogen compound metabolic process 20.63% (26/126) 0.71 0.007157 0.029007
GO:0044270 cellular nitrogen compound catabolic process 2.38% (3/126) 2.93 0.007363 0.029322
GO:0006396 RNA processing 3.97% (5/126) 2.05 0.007442 0.029384
GO:0046700 heterocycle catabolic process 2.38% (3/126) 2.92 0.007532 0.029484
GO:0018205 peptidyl-lysine modification 1.59% (2/126) 3.93 0.007705 0.029653
GO:0044238 primary metabolic process 23.81% (30/126) 0.64 0.007643 0.029666
GO:0006479 protein methylation 1.59% (2/126) 3.89 0.008083 0.030343
GO:0008213 protein alkylation 1.59% (2/126) 3.89 0.008083 0.030343
GO:0043933 protein-containing complex organization 3.17% (4/126) 2.35 0.008036 0.030672
GO:0071840 cellular component organization or biogenesis 5.56% (7/126) 1.61 0.00832 0.030979
GO:0043227 membrane-bounded organelle 4.76% (6/126) 1.78 0.008523 0.031227
GO:0043231 intracellular membrane-bounded organelle 4.76% (6/126) 1.78 0.008523 0.031227
GO:0009057 macromolecule catabolic process 3.17% (4/126) 2.31 0.008999 0.03271
GO:0019903 protein phosphatase binding 0.79% (1/126) 6.66 0.009829 0.034362
GO:0006435 threonyl-tRNA aminoacylation 0.79% (1/126) 6.66 0.009829 0.034362
GO:0019902 phosphatase binding 0.79% (1/126) 6.66 0.009829 0.034362
GO:0051568 histone H3-K4 methylation 0.79% (1/126) 6.66 0.009829 0.034362
GO:0004829 threonine-tRNA ligase activity 0.79% (1/126) 6.66 0.009829 0.034362
GO:0051274 beta-glucan biosynthetic process 1.59% (2/126) 3.73 0.010093 0.035021
GO:0051273 beta-glucan metabolic process 1.59% (2/126) 3.69 0.010519 0.036225
GO:0048646 anatomical structure formation involved in morphogenesis 0.79% (1/126) 6.25 0.013083 0.041043
GO:0009452 7-methylguanosine RNA capping 0.79% (1/126) 6.25 0.013083 0.041043
GO:0031929 TOR signaling 0.79% (1/126) 6.25 0.013083 0.041043
GO:0038201 TOR complex 0.79% (1/126) 6.25 0.013083 0.041043
GO:0031931 TORC1 complex 0.79% (1/126) 6.25 0.013083 0.041043
GO:0032988 protein-RNA complex disassembly 0.79% (1/126) 6.25 0.013083 0.041043
GO:0036260 RNA capping 0.79% (1/126) 6.25 0.013083 0.041043
GO:0000390 spliceosomal complex disassembly 0.79% (1/126) 6.25 0.013083 0.041043
GO:1905393 plant organ formation 0.79% (1/126) 6.25 0.013083 0.041043
GO:0046695 SLIK (SAGA-like) complex 0.79% (1/126) 6.25 0.013083 0.041043
GO:0017053 transcription repressor complex 0.79% (1/126) 6.25 0.013083 0.041043
GO:0071203 WASH complex 0.79% (1/126) 6.25 0.013083 0.041043
GO:0043226 organelle 6.35% (8/126) 1.36 0.013416 0.041239
GO:0043229 intracellular organelle 6.35% (8/126) 1.36 0.013416 0.041239
GO:0044237 cellular metabolic process 19.05% (24/126) 0.68 0.013284 0.041389
GO:0046872 metal ion binding 10.32% (13/126) 1.01 0.01266 0.043272
GO:0051169 nuclear transport 1.59% (2/126) 3.47 0.014206 0.043377
GO:0009250 glucan biosynthetic process 1.59% (2/126) 3.39 0.015713 0.047659
GO:0035510 DNA dealkylation 0.79% (1/126) 5.93 0.016328 0.047936
GO:0035514 DNA demethylase activity 0.79% (1/126) 5.93 0.016328 0.047936
GO:0006623 protein targeting to vacuole 0.79% (1/126) 5.93 0.016328 0.047936
GO:0080111 DNA demethylation 0.79% (1/126) 5.93 0.016328 0.047936
GO:0016887 ATP hydrolysis activity 3.17% (4/126) 2.04 0.016543 0.047954
GO:0043169 cation binding 10.32% (13/126) 0.97 0.01595 0.04806
GO:0019439 aromatic compound catabolic process 2.38% (3/126) 2.49 0.016513 0.048171
GO:0004674 protein serine/threonine kinase activity 2.38% (3/126) 2.48 0.017055 0.048821
GO:1901361 organic cyclic compound catabolic process 2.38% (3/126) 2.48 0.017055 0.048821
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (126) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms