Coexpression cluster: Cluster_22 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1902494 catalytic complex 13.04% (12/92) 3.91 0.0 0.0
GO:0032991 protein-containing complex 20.65% (19/92) 2.78 0.0 0.0
GO:0140535 intracellular protein-containing complex 9.78% (9/92) 4.34 0.0 0.0
GO:0005839 proteasome core complex 5.43% (5/92) 6.5 0.0 0.0
GO:0005575 cellular_component 29.35% (27/92) 1.66 0.0 4e-06
GO:0048193 Golgi vesicle transport 5.43% (5/92) 5.05 0.0 3.7e-05
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport 4.35% (4/92) 5.84 1e-06 5e-05
GO:0051641 cellular localization 8.7% (8/92) 3.29 2e-06 0.000108
GO:0004298 threonine-type endopeptidase activity 3.26% (3/92) 6.59 4e-06 0.000206
GO:0070003 threonine-type peptidase activity 3.26% (3/92) 6.38 6e-06 0.000293
GO:1990234 transferase complex 5.43% (5/92) 3.85 2.6e-05 0.00118
GO:0051603 proteolysis involved in protein catabolic process 5.43% (5/92) 3.77 3.5e-05 0.001335
GO:0005665 RNA polymerase II, core complex 2.17% (2/92) 7.7 3.4e-05 0.001397
GO:0140534 endoplasmic reticulum protein-containing complex 3.26% (3/92) 5.33 5.7e-05 0.002013
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.26% (3/92) 4.86 0.000154 0.005051
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.26% (3/92) 4.7 0.000214 0.006579
GO:0006457 protein folding 4.35% (4/92) 3.75 0.000234 0.006768
GO:0019773 proteasome core complex, alpha-subunit complex 2.17% (2/92) 6.38 0.000253 0.006921
GO:0046907 intracellular transport 5.43% (5/92) 3.09 0.000314 0.00773
GO:0051649 establishment of localization in cell 5.43% (5/92) 3.08 0.000332 0.007786
GO:0016192 vesicle-mediated transport 5.43% (5/92) 3.11 0.000303 0.007836
GO:0055029 nuclear DNA-directed RNA polymerase complex 2.17% (2/92) 6.12 0.00037 0.008279
GO:0034062 5'-3' RNA polymerase activity 3.26% (3/92) 4.38 0.000415 0.008499
GO:0097747 RNA polymerase activity 3.26% (3/92) 4.38 0.000415 0.008499
GO:0140513 nuclear protein-containing complex 5.43% (5/92) 2.96 0.000474 0.009326
GO:0000428 DNA-directed RNA polymerase complex 2.17% (2/92) 5.7 0.000669 0.012657
GO:0006508 proteolysis 7.61% (7/92) 2.17 0.000959 0.017475
GO:0030880 RNA polymerase complex 2.17% (2/92) 5.31 0.001161 0.020408
GO:0003924 GTPase activity 4.35% (4/92) 3.12 0.001208 0.020502
GO:0000122 negative regulation of transcription by RNA polymerase II 1.09% (1/92) 8.7 0.0024 0.021085
GO:0034998 oligosaccharyltransferase I complex 1.09% (1/92) 8.7 0.0024 0.021085
GO:0004844 uracil DNA N-glycosylase activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0097506 deaminated base DNA N-glycosylase activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0047560 3-dehydrosphinganine reductase activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0006666 3-keto-sphinganine metabolic process 1.09% (1/92) 8.7 0.0024 0.021085
GO:0031209 SCAR complex 1.09% (1/92) 8.7 0.0024 0.021085
GO:0046519 sphingoid metabolic process 1.09% (1/92) 8.7 0.0024 0.021085
GO:0045787 positive regulation of cell cycle 1.09% (1/92) 8.7 0.0024 0.021085
GO:0030295 protein kinase activator activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0043539 protein serine/threonine kinase activator activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0071902 positive regulation of protein serine/threonine kinase activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:1904031 positive regulation of cyclin-dependent protein kinase activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0019209 kinase activator activity 1.09% (1/92) 8.7 0.0024 0.021085
GO:0000413 protein peptidyl-prolyl isomerization 2.17% (2/92) 4.75 0.002532 0.021477
GO:0018208 peptidyl-proline modification 2.17% (2/92) 4.75 0.002532 0.021477
GO:0019001 guanyl nucleotide binding 4.35% (4/92) 2.8 0.002681 0.022355
GO:0045184 establishment of protein localization 4.35% (4/92) 2.77 0.002888 0.023678
GO:0070727 cellular macromolecule localization 4.35% (4/92) 2.74 0.00315 0.023841
GO:0033036 macromolecule localization 4.35% (4/92) 2.74 0.00315 0.023841
GO:0008104 protein localization 4.35% (4/92) 2.74 0.00315 0.023841
GO:0009057 macromolecule catabolic process 4.35% (4/92) 2.76 0.002973 0.02398
GO:0016485 protein processing 2.17% (2/92) 4.57 0.00322 0.024001
GO:0043085 positive regulation of catalytic activity 2.17% (2/92) 5.12 0.001519 0.024113
GO:0046467 membrane lipid biosynthetic process 2.17% (2/92) 4.62 0.00304 0.024127
GO:0018193 peptidyl-amino acid modification 3.26% (3/92) 3.75 0.001485 0.024352
GO:0008150 biological_process 45.65% (42/92) 0.58 0.001624 0.024968
GO:0031090 organelle membrane 3.26% (3/92) 3.69 0.001675 0.02498
GO:0051234 establishment of localization 10.87% (10/92) 1.46 0.003476 0.025525
GO:0051179 localization 10.87% (10/92) 1.44 0.00376 0.026811
GO:0044093 positive regulation of molecular function 2.17% (2/92) 4.95 0.001923 0.027034
GO:0005789 endoplasmic reticulum membrane 2.17% (2/92) 4.95 0.001923 0.027034
GO:0009987 cellular process 30.43% (28/92) 0.72 0.003746 0.027104
GO:0010498 proteasomal protein catabolic process 2.17% (2/92) 4.9 0.002068 0.027497
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 2.17% (2/92) 4.9 0.002068 0.027497
GO:0006643 membrane lipid metabolic process 2.17% (2/92) 4.28 0.004826 0.027608
GO:0019774 proteasome core complex, beta-subunit complex 1.09% (1/92) 7.7 0.004794 0.02775
GO:0080147 root hair cell development 1.09% (1/92) 7.7 0.004794 0.02775
GO:0005675 transcription factor TFIIH holo complex 1.09% (1/92) 7.7 0.004794 0.02775
GO:0005786 signal recognition particle, endoplasmic reticulum targeting 1.09% (1/92) 7.7 0.004794 0.02775
GO:0030942 endoplasmic reticulum signal peptide binding 1.09% (1/92) 7.7 0.004794 0.02775
GO:0048468 cell development 1.09% (1/92) 7.7 0.004794 0.02775
GO:0005262 calcium channel activity 1.09% (1/92) 7.7 0.004794 0.02775
GO:0032806 carboxy-terminal domain protein kinase complex 1.09% (1/92) 7.7 0.004794 0.02775
GO:0001055 RNA polymerase II activity 1.09% (1/92) 7.7 0.004794 0.02775
GO:0032469 endoplasmic reticulum calcium ion homeostasis 1.09% (1/92) 7.7 0.004794 0.02775
GO:0031932 TORC2 complex 1.09% (1/92) 7.7 0.004794 0.02775
GO:0006605 protein targeting 2.17% (2/92) 4.84 0.002218 0.028711
GO:0043632 modification-dependent macromolecule catabolic process 3.26% (3/92) 3.21 0.004268 0.028765
GO:0006511 ubiquitin-dependent protein catabolic process 3.26% (3/92) 3.21 0.004268 0.028765
GO:0019941 modification-dependent protein catabolic process 3.26% (3/92) 3.21 0.004268 0.028765
GO:0005525 GTP binding 4.35% (4/92) 2.85 0.002372 0.029171
GO:0032561 guanyl ribonucleotide binding 4.35% (4/92) 2.85 0.002372 0.029171
GO:0006351 DNA-templated transcription 3.26% (3/92) 3.22 0.00418 0.029381
GO:0016779 nucleotidyltransferase activity 3.26% (3/92) 3.11 0.005206 0.029442
GO:0006807 nitrogen compound metabolic process 22.83% (21/92) 0.86 0.004503 0.029938
GO:0030163 protein catabolic process 2.17% (2/92) 4.18 0.005505 0.03078
GO:0043170 macromolecule metabolic process 20.65% (19/92) 0.89 0.005758 0.03183
GO:0051604 protein maturation 2.17% (2/92) 4.12 0.005982 0.032699
GO:0009139 pyrimidine nucleoside diphosphate biosynthetic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0009196 pyrimidine deoxyribonucleoside diphosphate metabolic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0009189 deoxyribonucleoside diphosphate biosynthetic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0009186 deoxyribonucleoside diphosphate metabolic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0009138 pyrimidine nucleoside diphosphate metabolic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0009133 nucleoside diphosphate biosynthetic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0061077 chaperone-mediated protein folding 1.09% (1/92) 7.12 0.007183 0.03398
GO:0006233 dTDP biosynthetic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0004798 thymidylate kinase activity 1.09% (1/92) 7.12 0.007183 0.03398
GO:0009197 pyrimidine deoxyribonucleoside diphosphate biosynthetic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0046072 dTDP metabolic process 1.09% (1/92) 7.12 0.007183 0.03398
GO:0031213 RSF complex 1.09% (1/92) 7.12 0.007183 0.03398
GO:0031010 ISWI-type complex 1.09% (1/92) 7.12 0.007183 0.03398
GO:0051568 histone H3-K4 methylation 1.09% (1/92) 7.12 0.007183 0.03398
GO:0004175 endopeptidase activity 4.35% (4/92) 2.39 0.00733 0.034345
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 2.17% (2/92) 3.95 0.007518 0.034894
GO:0016859 cis-trans isomerase activity 2.17% (2/92) 3.92 0.007789 0.035817
GO:0071705 nitrogen compound transport 4.35% (4/92) 2.33 0.008411 0.038316
GO:0038201 TOR complex 1.09% (1/92) 6.7 0.009566 0.041284
GO:0031931 TORC1 complex 1.09% (1/92) 6.7 0.009566 0.041284
GO:0031929 TOR signaling 1.09% (1/92) 6.7 0.009566 0.041284
GO:0008250 oligosaccharyltransferase complex 1.09% (1/92) 6.7 0.009566 0.041284
GO:0072546 EMC complex 1.09% (1/92) 6.7 0.009566 0.041284
GO:0034654 nucleobase-containing compound biosynthetic process 4.35% (4/92) 2.27 0.009782 0.041852
GO:0050790 regulation of catalytic activity 2.17% (2/92) 3.73 0.010118 0.042915
GO:0006810 transport 9.78% (9/92) 1.33 0.009563 0.043164
GO:0140640 catalytic activity, acting on a nucleic acid 5.43% (5/92) 1.91 0.011041 0.046431
GO:0005787 signal peptidase complex 1.09% (1/92) 6.38 0.011943 0.046634
GO:0030176 obsolete integral component of endoplasmic reticulum membrane 1.09% (1/92) 6.38 0.011943 0.046634
GO:0140318 protein transporter activity 1.09% (1/92) 6.38 0.011943 0.046634
GO:0043424 protein histidine kinase binding 1.09% (1/92) 6.38 0.011943 0.046634
GO:0009927 histidine phosphotransfer kinase activity 1.09% (1/92) 6.38 0.011943 0.046634
GO:0008320 protein transmembrane transporter activity 1.09% (1/92) 6.38 0.011943 0.046634
GO:0022884 macromolecule transmembrane transporter activity 1.09% (1/92) 6.38 0.011943 0.046634
GO:0140098 catalytic activity, acting on RNA 4.35% (4/92) 2.19 0.011611 0.048411
GO:0065009 regulation of molecular function 2.17% (2/92) 3.62 0.011711 0.048418
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (92) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms