Coexpression cluster: Cluster_195 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 15.07% (11/73) 2.96 0.0 6.3e-05
GO:0005634 nucleus 10.96% (8/73) 3.4 1e-06 8.8e-05
GO:0043227 membrane-bounded organelle 12.33% (9/73) 3.15 1e-06 0.000102
GO:0043231 intracellular membrane-bounded organelle 12.33% (9/73) 3.15 1e-06 0.000102
GO:0005488 binding 54.79% (40/73) 0.91 4e-06 0.000257
GO:0006397 mRNA processing 6.85% (5/73) 4.3 6e-06 0.000278
GO:0006396 RNA processing 9.59% (7/73) 3.32 7e-06 0.000281
GO:0140657 ATP-dependent activity 10.96% (8/73) 3.13 4e-06 0.000293
GO:0090304 nucleic acid metabolic process 15.07% (11/73) 2.44 5e-06 0.0003
GO:0043170 macromolecule metabolic process 30.14% (22/73) 1.43 9e-06 0.000321
GO:0006139 nucleobase-containing compound metabolic process 16.44% (12/73) 2.23 9e-06 0.000329
GO:0000398 mRNA splicing, via spliceosome 5.48% (4/73) 4.83 1.3e-05 0.000403
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 5.48% (4/73) 4.68 1.9e-05 0.000454
GO:0016071 mRNA metabolic process 6.85% (5/73) 4.01 1.6e-05 0.000459
GO:0006807 nitrogen compound metabolic process 31.51% (23/73) 1.33 1.8e-05 0.000472
GO:0000375 RNA splicing, via transesterification reactions 5.48% (4/73) 4.61 2.3e-05 0.000487
GO:0046483 heterocycle metabolic process 16.44% (12/73) 2.09 2.2e-05 0.000492
GO:0016070 RNA metabolic process 12.33% (9/73) 2.59 1.8e-05 0.000505
GO:0006725 cellular aromatic compound metabolic process 16.44% (12/73) 2.04 3e-05 0.000606
GO:1901360 organic cyclic compound metabolic process 16.44% (12/73) 2.01 3.6e-05 0.0007
GO:0008380 RNA splicing 5.48% (4/73) 4.39 4.1e-05 0.000756
GO:0018205 peptidyl-lysine modification 4.11% (3/73) 5.3 6.2e-05 0.001086
GO:0043226 organelle 12.33% (9/73) 2.31 8e-05 0.001276
GO:0043229 intracellular organelle 12.33% (9/73) 2.31 8e-05 0.001276
GO:0051028 mRNA transport 2.74% (2/73) 6.87 0.000128 0.001816
GO:0006406 mRNA export from nucleus 2.74% (2/73) 6.87 0.000128 0.001816
GO:0044238 primary metabolic process 32.88% (24/73) 1.11 0.000134 0.001843
GO:0003676 nucleic acid binding 20.55% (15/73) 1.57 0.00012 0.00185
GO:0034641 cellular nitrogen compound metabolic process 16.44% (12/73) 1.8 0.000148 0.001953
GO:0008270 zinc ion binding 9.59% (7/73) 2.56 0.000188 0.002411
GO:0006405 RNA export from nucleus 2.74% (2/73) 6.45 0.000233 0.002888
GO:0005515 protein binding 26.03% (19/73) 1.25 0.000245 0.002936
GO:0051236 establishment of RNA localization 2.74% (2/73) 6.34 0.000275 0.002936
GO:0036402 proteasome-activating activity 2.74% (2/73) 6.34 0.000275 0.002936
GO:0050658 RNA transport 2.74% (2/73) 6.34 0.000275 0.002936
GO:0050657 nucleic acid transport 2.74% (2/73) 6.34 0.000275 0.002936
GO:0008641 ubiquitin-like modifier activating enzyme activity 2.74% (2/73) 6.04 0.000422 0.004378
GO:0071704 organic substance metabolic process 32.88% (24/73) 0.99 0.000476 0.00481
GO:0008237 metallopeptidase activity 4.11% (3/73) 4.25 0.000546 0.005373
GO:0051168 nuclear export 2.74% (2/73) 5.79 0.000599 0.00575
GO:0043687 post-translational protein modification 6.85% (5/73) 2.82 0.000724 0.006781
GO:0018193 peptidyl-amino acid modification 4.11% (3/73) 4.08 0.00076 0.006951
GO:0016571 histone methylation 2.74% (2/73) 5.45 0.000961 0.008385
GO:0034968 histone lysine methylation 2.74% (2/73) 5.45 0.000961 0.008385
GO:0016877 ligase activity, forming carbon-sulfur bonds 2.74% (2/73) 5.39 0.001043 0.008901
GO:0008152 metabolic process 32.88% (24/73) 0.9 0.001155 0.00964
GO:0018022 peptidyl-lysine methylation 2.74% (2/73) 5.28 0.001217 0.009946
GO:0009057 macromolecule catabolic process 5.48% (4/73) 3.09 0.001273 0.010186
GO:0004386 helicase activity 4.11% (3/73) 3.8 0.001335 0.010461
GO:0018024 obsolete histone lysine N-methyltransferase activity 2.74% (2/73) 5.18 0.001405 0.010788
GO:0019948 SUMO activating enzyme activity 1.37% (1/73) 9.04 0.001904 0.013542
GO:0016925 protein sumoylation 1.37% (1/73) 9.04 0.001904 0.013542
GO:0008810 cellulase activity 1.37% (1/73) 9.04 0.001904 0.013542
GO:0010265 SCF complex assembly 1.37% (1/73) 9.04 0.001904 0.013542
GO:0003674 molecular_function 63.01% (46/73) 0.46 0.002129 0.014863
GO:0005575 cellular_component 20.55% (15/73) 1.15 0.002533 0.017369
GO:0006479 protein methylation 2.74% (2/73) 4.68 0.002795 0.018507
GO:0008213 protein alkylation 2.74% (2/73) 4.68 0.002795 0.018507
GO:0034518 RNA cap binding complex 1.37% (1/73) 8.04 0.003805 0.020579
GO:0005846 nuclear cap binding complex 1.37% (1/73) 8.04 0.003805 0.020579
GO:0046073 dTMP metabolic process 1.37% (1/73) 8.04 0.003805 0.020579
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 1.37% (1/73) 8.04 0.003805 0.020579
GO:0004146 dihydrofolate reductase activity 1.37% (1/73) 8.04 0.003805 0.020579
GO:0019781 NEDD8 activating enzyme activity 1.37% (1/73) 8.04 0.003805 0.020579
GO:0045116 protein neddylation 1.37% (1/73) 8.04 0.003805 0.020579
GO:0000339 RNA cap binding 1.37% (1/73) 8.04 0.003805 0.020579
GO:0004799 thymidylate synthase activity 1.37% (1/73) 8.04 0.003805 0.020579
GO:0006231 dTMP biosynthetic process 1.37% (1/73) 8.04 0.003805 0.020579
GO:0015931 nucleobase-containing compound transport 2.74% (2/73) 4.58 0.003213 0.020912
GO:0004222 metalloendopeptidase activity 2.74% (2/73) 4.42 0.00397 0.021172
GO:0030163 protein catabolic process 2.74% (2/73) 4.51 0.003507 0.022443
GO:0110165 cellular anatomical entity 16.44% (12/73) 1.27 0.003687 0.023212
GO:0006913 nucleocytoplasmic transport 2.74% (2/73) 4.31 0.004629 0.0237
GO:0008186 ATP-dependent activity, acting on RNA 2.74% (2/73) 4.31 0.004629 0.0237
GO:0003724 RNA helicase activity 2.74% (2/73) 4.31 0.004629 0.0237
GO:0051169 nuclear transport 2.74% (2/73) 4.26 0.004976 0.025142
GO:0016570 histone modification 2.74% (2/73) 4.15 0.005705 0.026081
GO:0009162 deoxyribonucleoside monophosphate metabolic process 1.37% (1/73) 7.45 0.005702 0.026381
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 1.37% (1/73) 7.45 0.005702 0.026381
GO:0016973 poly(A)+ mRNA export from nucleus 1.37% (1/73) 7.45 0.005702 0.026381
GO:0046654 tetrahydrofolate biosynthetic process 1.37% (1/73) 7.45 0.005702 0.026381
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 1.37% (1/73) 7.45 0.005702 0.026381
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 1.37% (1/73) 7.45 0.005702 0.026381
GO:0140535 intracellular protein-containing complex 4.11% (3/73) 3.09 0.005369 0.026773
GO:0016043 cellular component organization 6.85% (5/73) 2.1 0.00637 0.028775
GO:0022607 cellular component assembly 4.11% (3/73) 2.95 0.007027 0.031375
GO:0043564 Ku70:Ku80 complex 1.37% (1/73) 7.04 0.007596 0.031704
GO:0005685 U1 snRNP 1.37% (1/73) 7.04 0.007596 0.031704
GO:0042256 cytosolic ribosome assembly 1.37% (1/73) 7.04 0.007596 0.031704
GO:0005737 cytoplasm 4.11% (3/73) 2.93 0.007217 0.031854
GO:0101005 deubiquitinase activity 2.74% (2/73) 3.97 0.007301 0.031857
GO:0097159 organic cyclic compound binding 28.77% (21/73) 0.78 0.007391 0.031889
GO:0019783 ubiquitin-like protein peptidase activity 2.74% (2/73) 3.91 0.007945 0.032805
GO:0046914 transition metal ion binding 9.59% (7/73) 1.59 0.008623 0.035228
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 1.37% (1/73) 6.71 0.009486 0.037169
GO:0061578 K63-linked deubiquitinase activity 1.37% (1/73) 6.71 0.009486 0.037169
GO:0006303 double-strand break repair via nonhomologous end joining 1.37% (1/73) 6.71 0.009486 0.037169
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 1.37% (1/73) 6.71 0.009486 0.037169
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 1.37% (1/73) 6.45 0.011372 0.0397
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 1.37% (1/73) 6.45 0.011372 0.0397
GO:0009265 2'-deoxyribonucleotide biosynthetic process 1.37% (1/73) 6.45 0.011372 0.0397
GO:0009394 2'-deoxyribonucleotide metabolic process 1.37% (1/73) 6.45 0.011372 0.0397
GO:0042255 ribosome assembly 1.37% (1/73) 6.45 0.011372 0.0397
GO:0019692 deoxyribose phosphate metabolic process 1.37% (1/73) 6.45 0.011372 0.0397
GO:0045292 mRNA cis splicing, via spliceosome 1.37% (1/73) 6.45 0.011372 0.0397
GO:0046385 deoxyribose phosphate biosynthetic process 1.37% (1/73) 6.45 0.011372 0.0397
GO:0000502 proteasome complex 1.37% (1/73) 6.45 0.011372 0.0397
GO:0043414 macromolecule methylation 2.74% (2/73) 3.71 0.01027 0.039833
GO:0043933 protein-containing complex organization 4.11% (3/73) 2.73 0.010681 0.040608
GO:0071840 cellular component organization or biogenesis 6.85% (5/73) 1.92 0.010601 0.040707
GO:0009263 deoxyribonucleotide biosynthetic process 1.37% (1/73) 6.04 0.015135 0.044028
GO:1905819 negative regulation of chromosome separation 1.37% (1/73) 6.04 0.015135 0.044028
GO:0032200 telomere organization 1.37% (1/73) 6.04 0.015135 0.044028
GO:0007094 mitotic spindle assembly checkpoint signaling 1.37% (1/73) 6.04 0.015135 0.044028
GO:0000723 telomere maintenance 1.37% (1/73) 6.04 0.015135 0.044028
GO:2000816 negative regulation of mitotic sister chromatid separation 1.37% (1/73) 6.04 0.015135 0.044028
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle 1.37% (1/73) 6.04 0.015135 0.044028
GO:0006730 one-carbon metabolic process 1.37% (1/73) 6.04 0.015135 0.044028
GO:0006874 intracellular calcium ion homeostasis 1.37% (1/73) 6.04 0.015135 0.044028
GO:0055074 calcium ion homeostasis 1.37% (1/73) 6.04 0.015135 0.044028
GO:0031577 spindle checkpoint signaling 1.37% (1/73) 6.04 0.015135 0.044028
GO:0033046 negative regulation of sister chromatid segregation 1.37% (1/73) 6.04 0.015135 0.044028
GO:0033048 negative regulation of mitotic sister chromatid segregation 1.37% (1/73) 6.04 0.015135 0.044028
GO:0045839 negative regulation of mitotic nuclear division 1.37% (1/73) 6.04 0.015135 0.044028
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 1.37% (1/73) 6.04 0.015135 0.044028
GO:0051784 negative regulation of nuclear division 1.37% (1/73) 6.04 0.015135 0.044028
GO:0051985 negative regulation of chromosome segregation 1.37% (1/73) 6.04 0.015135 0.044028
GO:0071174 mitotic spindle checkpoint signaling 1.37% (1/73) 6.04 0.015135 0.044028
GO:0071173 spindle assembly checkpoint signaling 1.37% (1/73) 6.04 0.015135 0.044028
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.37% (1/73) 6.23 0.013255 0.045856
GO:1905818 regulation of chromosome separation 1.37% (1/73) 5.87 0.017011 0.046658
GO:0007088 regulation of mitotic nuclear division 1.37% (1/73) 5.87 0.017011 0.046658
GO:0010965 regulation of mitotic sister chromatid separation 1.37% (1/73) 5.87 0.017011 0.046658
GO:0042162 telomeric DNA binding 1.37% (1/73) 5.87 0.017011 0.046658
GO:0033047 regulation of mitotic sister chromatid segregation 1.37% (1/73) 5.87 0.017011 0.046658
GO:0009262 deoxyribonucleotide metabolic process 1.37% (1/73) 5.87 0.017011 0.046658
GO:0046653 tetrahydrofolate metabolic process 1.37% (1/73) 5.87 0.017011 0.046658
GO:2001251 negative regulation of chromosome organization 1.37% (1/73) 5.87 0.017011 0.046658
GO:0016462 pyrophosphatase activity 5.48% (4/73) 2.02 0.017243 0.046961
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.48% (4/73) 2.11 0.014159 0.048545
GO:0032259 methylation 2.74% (2/73) 3.45 0.014533 0.049385
GO:0016887 ATP hydrolysis activity 4.11% (3/73) 2.42 0.018886 0.049674
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (73) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms