Coexpression cluster: Cluster_161 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 56.78% (67/118) 0.96 0.0 0.0
GO:0003676 nucleic acid binding 22.03% (26/118) 1.67 0.0 2.2e-05
GO:0005515 protein binding 27.97% (33/118) 1.35 0.0 3.5e-05
GO:0008186 ATP-dependent activity, acting on RNA 4.24% (5/118) 4.94 1e-06 5.2e-05
GO:0003724 RNA helicase activity 4.24% (5/118) 4.94 1e-06 5.2e-05
GO:0090304 nucleic acid metabolic process 12.71% (15/118) 2.19 1e-06 7.1e-05
GO:0004386 helicase activity 5.08% (6/118) 4.11 1e-06 7.2e-05
GO:0140640 catalytic activity, acting on a nucleic acid 9.32% (11/118) 2.68 1e-06 7.3e-05
GO:0032991 protein-containing complex 12.71% (15/118) 2.08 3e-06 0.000107
GO:0003674 molecular_function 66.95% (79/118) 0.55 2e-06 0.00011
GO:0016043 cellular component organization 9.32% (11/118) 2.54 3e-06 0.00012
GO:0005634 nucleus 7.63% (9/118) 2.88 4e-06 0.000137
GO:0033554 cellular response to stress 5.93% (7/118) 3.34 6e-06 0.000197
GO:0051716 cellular response to stimulus 5.93% (7/118) 3.29 8e-06 0.000237
GO:0071840 cellular component organization or biogenesis 9.32% (11/118) 2.36 1.1e-05 0.000286
GO:0006139 nucleobase-containing compound metabolic process 12.71% (15/118) 1.86 1.7e-05 0.000432
GO:0140513 nuclear protein-containing complex 5.93% (7/118) 3.09 2e-05 0.00047
GO:0006974 DNA damage response 5.08% (6/118) 3.34 3e-05 0.000668
GO:0006259 DNA metabolic process 5.93% (7/118) 2.97 3.5e-05 0.000728
GO:0043227 membrane-bounded organelle 7.63% (9/118) 2.46 4.2e-05 0.000768
GO:0043231 intracellular membrane-bounded organelle 7.63% (9/118) 2.46 4.2e-05 0.000768
GO:0051276 chromosome organization 3.39% (4/118) 4.39 4.1e-05 0.000825
GO:0005643 nuclear pore 2.54% (3/118) 5.41 4.8e-05 0.000833
GO:0046483 heterocycle metabolic process 12.71% (15/118) 1.72 5.1e-05 0.000847
GO:0005575 cellular_component 21.19% (25/118) 1.19 6.9e-05 0.001059
GO:0006338 chromatin remodeling 3.39% (4/118) 4.21 6.7e-05 0.001064
GO:0006725 cellular aromatic compound metabolic process 12.71% (15/118) 1.67 7.4e-05 0.001085
GO:0006996 organelle organization 5.08% (6/118) 3.1 7.7e-05 0.001088
GO:0010048 vernalization response 1.69% (2/118) 7.02 9.3e-05 0.001199
GO:0006611 protein export from nucleus 1.69% (2/118) 7.02 9.3e-05 0.001199
GO:1901360 organic cyclic compound metabolic process 12.71% (15/118) 1.64 9.2e-05 0.001262
GO:0006325 chromatin organization 3.39% (4/118) 4.06 0.000102 0.001269
GO:0140657 ATP-dependent activity 6.78% (8/118) 2.43 0.000127 0.001533
GO:0005049 nuclear export signal receptor activity 1.69% (2/118) 6.54 0.000195 0.002286
GO:0071824 protein-DNA complex organization 3.39% (4/118) 3.79 0.00021 0.002389
GO:0032012 regulation of ARF protein signal transduction 1.69% (2/118) 6.34 0.00026 0.002722
GO:0046578 regulation of Ras protein signal transduction 1.69% (2/118) 6.34 0.00026 0.002722
GO:0051056 regulation of small GTPase mediated signal transduction 1.69% (2/118) 6.34 0.00026 0.002722
GO:0006281 DNA repair 4.24% (5/118) 3.14 0.000272 0.002779
GO:0006265 DNA topological change 1.69% (2/118) 6.02 0.000416 0.003942
GO:0009409 response to cold 1.69% (2/118) 6.02 0.000416 0.003942
GO:0044877 protein-containing complex binding 3.39% (4/118) 3.55 0.000396 0.003944
GO:0034641 cellular nitrogen compound metabolic process 12.71% (15/118) 1.43 0.000446 0.004128
GO:0006357 regulation of transcription by RNA polymerase II 3.39% (4/118) 3.46 0.0005 0.004518
GO:0050794 regulation of cellular process 13.56% (16/118) 1.33 0.000613 0.004879
GO:0006298 mismatch repair 1.69% (2/118) 5.76 0.000608 0.004936
GO:0140142 nucleocytoplasmic carrier activity 1.69% (2/118) 5.76 0.000608 0.004936
GO:0030983 mismatched DNA binding 1.69% (2/118) 5.76 0.000608 0.004936
GO:0003916 DNA topoisomerase activity 1.69% (2/118) 5.76 0.000608 0.004936
GO:0051169 nuclear transport 2.54% (3/118) 4.15 0.000664 0.00518
GO:0006913 nucleocytoplasmic transport 2.54% (3/118) 4.2 0.000595 0.005265
GO:0008150 biological_process 44.92% (53/118) 0.56 0.000701 0.005366
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.93% (7/118) 2.22 0.000813 0.006103
GO:0043933 protein-containing complex organization 4.24% (5/118) 2.77 0.000875 0.006452
GO:0140098 catalytic activity, acting on RNA 5.08% (6/118) 2.42 0.00095 0.006749
GO:0003712 transcription coregulator activity 2.54% (3/118) 3.97 0.000942 0.006816
GO:0046907 intracellular transport 4.24% (5/118) 2.73 0.000978 0.00683
GO:0051649 establishment of localization in cell 4.24% (5/118) 2.72 0.001033 0.007087
GO:0050789 regulation of biological process 13.56% (16/118) 1.24 0.001156 0.007671
GO:0016462 pyrophosphatase activity 5.93% (7/118) 2.13 0.001147 0.00774
GO:1902531 regulation of intracellular signal transduction 1.69% (2/118) 5.26 0.00124 0.008089
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.93% (7/118) 2.1 0.001308 0.008398
GO:0016817 hydrolase activity, acting on acid anhydrides 5.93% (7/118) 2.1 0.001337 0.008444
GO:0071103 DNA conformation change 1.69% (2/118) 5.17 0.001392 0.008522
GO:0140097 catalytic activity, acting on DNA 3.39% (4/118) 3.07 0.00138 0.008581
GO:0051168 nuclear export 1.69% (2/118) 5.1 0.001552 0.008955
GO:0051020 GTPase binding 1.69% (2/118) 5.1 0.001552 0.008955
GO:0031267 small GTPase binding 1.69% (2/118) 5.1 0.001552 0.008955
GO:0065007 biological regulation 13.56% (16/118) 1.21 0.0015 0.009045
GO:0031326 regulation of cellular biosynthetic process 10.17% (12/118) 1.41 0.001882 0.010258
GO:0009889 regulation of biosynthetic process 10.17% (12/118) 1.41 0.001882 0.010258
GO:0010556 regulation of macromolecule biosynthetic process 10.17% (12/118) 1.42 0.00186 0.010428
GO:0010468 regulation of gene expression 10.17% (12/118) 1.42 0.001839 0.010458
GO:0003677 DNA binding 10.17% (12/118) 1.4 0.002024 0.010888
GO:0097159 organic cyclic compound binding 27.12% (32/118) 0.69 0.003161 0.012456
GO:0099512 supramolecular fiber 1.69% (2/118) 4.59 0.003136 0.012481
GO:0099081 supramolecular polymer 1.69% (2/118) 4.59 0.003136 0.012481
GO:0005874 microtubule 1.69% (2/118) 4.59 0.003136 0.012481
GO:0018022 peptidyl-lysine methylation 1.69% (2/118) 4.59 0.003136 0.012481
GO:0140104 molecular carrier activity 1.69% (2/118) 4.59 0.003136 0.012481
GO:0099513 polymeric cytoskeletal fiber 1.69% (2/118) 4.59 0.003136 0.012481
GO:0008270 zinc ion binding 5.93% (7/118) 1.87 0.003262 0.012728
GO:0031248 protein acetyltransferase complex 1.69% (2/118) 4.54 0.00337 0.012775
GO:1902493 acetyltransferase complex 1.69% (2/118) 4.54 0.00337 0.012775
GO:0005085 guanyl-nucleotide exchange factor activity 1.69% (2/118) 4.54 0.00337 0.012775
GO:0016571 histone methylation 1.69% (2/118) 4.76 0.002481 0.012991
GO:0034968 histone lysine methylation 1.69% (2/118) 4.76 0.002481 0.012991
GO:0055087 Ski complex 0.85% (1/118) 8.34 0.003078 0.013033
GO:0031491 nucleosome binding 0.85% (1/118) 8.34 0.003078 0.013033
GO:0016251 RNA polymerase II general transcription initiation factor activity 0.85% (1/118) 8.34 0.003078 0.013033
GO:0010968 regulation of microtubule nucleation 0.85% (1/118) 8.34 0.003078 0.013033
GO:0031110 regulation of microtubule polymerization or depolymerization 0.85% (1/118) 8.34 0.003078 0.013033
GO:0031113 regulation of microtubule polymerization 0.85% (1/118) 8.34 0.003078 0.013033
GO:0140496 gamma-tubulin complex binding 0.85% (1/118) 8.34 0.003078 0.013033
GO:0031056 regulation of histone modification 0.85% (1/118) 8.34 0.003078 0.013033
GO:0035065 regulation of histone acetylation 0.85% (1/118) 8.34 0.003078 0.013033
GO:1901983 regulation of protein acetylation 0.85% (1/118) 8.34 0.003078 0.013033
GO:2000756 regulation of peptidyl-lysine acetylation 0.85% (1/118) 8.34 0.003078 0.013033
GO:0043226 organelle 7.63% (9/118) 1.62 0.002744 0.013482
GO:0043229 intracellular organelle 7.63% (9/118) 1.62 0.002744 0.013482
GO:0018024 obsolete histone lysine N-methyltransferase activity 1.69% (2/118) 4.49 0.003613 0.013565
GO:0060255 regulation of macromolecule metabolic process 10.17% (12/118) 1.35 0.002716 0.013685
GO:0000123 histone acetyltransferase complex 1.69% (2/118) 4.7 0.002691 0.013731
GO:0031323 regulation of cellular metabolic process 10.17% (12/118) 1.35 0.002659 0.013745
GO:1902494 catalytic complex 4.24% (5/118) 2.29 0.003775 0.014041
GO:0019222 regulation of metabolic process 10.17% (12/118) 1.33 0.00297 0.014417
GO:0016070 RNA metabolic process 6.78% (8/118) 1.73 0.003055 0.01465
GO:0009987 cellular process 28.81% (34/118) 0.64 0.004055 0.014945
GO:0003682 chromatin binding 1.69% (2/118) 4.39 0.004121 0.015048
GO:0051641 cellular localization 4.24% (5/118) 2.25 0.004172 0.015096
GO:0009266 response to temperature stimulus 1.69% (2/118) 4.34 0.004387 0.01559
GO:0099080 supramolecular complex 1.69% (2/118) 4.34 0.004387 0.01559
GO:0006950 response to stress 7.63% (9/118) 1.5 0.004708 0.016583
GO:0040029 epigenetic regulation of gene expression 1.69% (2/118) 4.21 0.005231 0.018263
GO:0140223 general transcription initiation factor activity 0.85% (1/118) 7.34 0.006147 0.020733
GO:0000930 gamma-tubulin complex 0.85% (1/118) 7.34 0.006147 0.020733
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 0.85% (1/118) 7.34 0.006147 0.020733
GO:0005876 spindle microtubule 0.85% (1/118) 7.34 0.006147 0.020733
GO:0023051 regulation of signaling 1.69% (2/118) 3.99 0.007123 0.02268
GO:0000226 microtubule cytoskeleton organization 1.69% (2/118) 3.99 0.007123 0.02268
GO:0009966 regulation of signal transduction 1.69% (2/118) 3.99 0.007123 0.02268
GO:0008213 protein alkylation 1.69% (2/118) 3.99 0.007123 0.02268
GO:0006479 protein methylation 1.69% (2/118) 3.99 0.007123 0.02268
GO:0010646 regulation of cell communication 1.69% (2/118) 3.99 0.007123 0.02268
GO:0018205 peptidyl-lysine modification 1.69% (2/118) 4.02 0.006789 0.022707
GO:0006355 regulation of DNA-templated transcription 8.47% (10/118) 1.28 0.0084 0.026324
GO:2001141 regulation of RNA biosynthetic process 8.47% (10/118) 1.28 0.0084 0.026324
GO:0051252 regulation of RNA metabolic process 8.47% (10/118) 1.27 0.008781 0.027304
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.47% (10/118) 1.26 0.00922 0.028013
GO:0006376 mRNA splice site recognition 0.85% (1/118) 6.76 0.009206 0.028186
GO:0032777 piccolo histone acetyltransferase complex 0.85% (1/118) 6.76 0.009206 0.028186
GO:1902679 negative regulation of RNA biosynthetic process 1.69% (2/118) 3.76 0.009662 0.028915
GO:0045892 negative regulation of DNA-templated transcription 1.69% (2/118) 3.76 0.009662 0.028915
GO:1990234 transferase complex 2.54% (3/118) 2.76 0.010116 0.030045
GO:0003690 double-stranded DNA binding 2.54% (3/118) 2.74 0.0105 0.030954
GO:0051253 negative regulation of RNA metabolic process 1.69% (2/118) 3.67 0.010856 0.031771
GO:0032300 mismatch repair complex 0.85% (1/118) 6.34 0.012257 0.033876
GO:0010073 meristem maintenance 0.85% (1/118) 6.34 0.012257 0.033876
GO:0048507 meristem development 0.85% (1/118) 6.34 0.012257 0.033876
GO:0005685 U1 snRNP 0.85% (1/118) 6.34 0.012257 0.033876
GO:0046695 SLIK (SAGA-like) complex 0.85% (1/118) 6.34 0.012257 0.033876
GO:0008250 oligosaccharyltransferase complex 0.85% (1/118) 6.34 0.012257 0.033876
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 1.69% (2/118) 3.62 0.011687 0.033951
GO:0006886 intracellular protein transport 2.54% (3/118) 2.67 0.011909 0.034347
GO:0016887 ATP hydrolysis activity 3.39% (4/118) 2.14 0.013297 0.036499
GO:0008080 N-acetyltransferase activity 1.69% (2/118) 3.51 0.013428 0.036605
GO:0051171 regulation of nitrogen compound metabolic process 8.47% (10/118) 1.17 0.01373 0.037173
GO:0080090 regulation of primary metabolic process 8.47% (10/118) 1.17 0.013974 0.037579
GO:0016570 histone modification 1.69% (2/118) 3.46 0.014338 0.0383
GO:0033588 elongator holoenzyme complex 0.85% (1/118) 6.02 0.015297 0.038534
GO:0030261 chromosome condensation 0.85% (1/118) 6.02 0.015297 0.038534
GO:0001882 nucleoside binding 0.85% (1/118) 6.02 0.015297 0.038534
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 0.85% (1/118) 6.02 0.015297 0.038534
GO:0032549 ribonucleoside binding 0.85% (1/118) 6.02 0.015297 0.038534
GO:0035510 DNA dealkylation 0.85% (1/118) 6.02 0.015297 0.038534
GO:0035514 DNA demethylase activity 0.85% (1/118) 6.02 0.015297 0.038534
GO:0080111 DNA demethylation 0.85% (1/118) 6.02 0.015297 0.038534
GO:0050896 response to stimulus 7.63% (9/118) 1.24 0.01474 0.039111
GO:0016410 N-acyltransferase activity 1.69% (2/118) 3.37 0.016237 0.040642
GO:0016407 acetyltransferase activity 1.69% (2/118) 3.34 0.016727 0.041608
GO:0019899 enzyme binding 1.69% (2/118) 3.3 0.017726 0.043821
GO:0090576 RNA polymerase III transcription regulator complex 0.85% (1/118) 5.76 0.018329 0.044212
GO:0070652 HAUS complex 0.85% (1/118) 5.76 0.018329 0.044212
GO:0000127 transcription factor TFIIIC complex 0.85% (1/118) 5.76 0.018329 0.044212
GO:0007020 microtubule nucleation 0.85% (1/118) 5.76 0.018329 0.044212
GO:0006352 DNA-templated transcription initiation 1.69% (2/118) 3.26 0.018751 0.044957
GO:0140535 intracellular protein-containing complex 2.54% (3/118) 2.4 0.019689 0.046923
GO:0005667 transcription regulator complex 1.69% (2/118) 3.15 0.021418 0.04816
GO:0007010 cytoskeleton organization 1.69% (2/118) 3.19 0.020333 0.04817
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 0.85% (1/118) 5.54 0.021351 0.048283
GO:0006487 protein N-linked glycosylation 0.85% (1/118) 5.54 0.021351 0.048283
GO:0007064 mitotic sister chromatid cohesion 0.85% (1/118) 5.54 0.021351 0.048283
GO:0031122 cytoplasmic microtubule organization 0.85% (1/118) 5.54 0.021351 0.048283
GO:0006384 transcription initiation at RNA polymerase III promoter 0.85% (1/118) 5.54 0.021351 0.048283
GO:0051225 spindle assembly 0.85% (1/118) 5.54 0.021351 0.048283
GO:0003924 GTPase activity 2.54% (3/118) 2.34 0.021687 0.04849
GO:0000398 mRNA splicing, via spliceosome 1.69% (2/118) 3.13 0.021969 0.048848
GO:0030695 GTPase regulator activity 1.69% (2/118) 3.17 0.020873 0.048867
GO:0060589 nucleoside-triphosphatase regulator activity 1.69% (2/118) 3.17 0.020873 0.048867
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (118) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms