Coexpression cluster: Cluster_135 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016192 vesicle-mediated transport 12.0% (9/75) 4.25 0.0 0.0
GO:0051179 localization 21.33% (16/75) 2.41 0.0 2e-06
GO:0051234 establishment of localization 21.33% (16/75) 2.43 0.0 2e-06
GO:0051649 establishment of localization in cell 10.67% (8/75) 4.05 0.0 2e-06
GO:0046907 intracellular transport 10.67% (8/75) 4.07 0.0 2e-06
GO:0030117 membrane coat 6.67% (5/75) 5.86 0.0 3e-06
GO:0006810 transport 21.33% (16/75) 2.46 0.0 4e-06
GO:0051641 cellular localization 10.67% (8/75) 3.58 0.0 1.5e-05
GO:0006886 intracellular protein transport 8.0% (6/75) 4.33 1e-06 2.2e-05
GO:0071702 organic substance transport 10.67% (8/75) 3.21 3e-06 8.7e-05
GO:0005575 cellular_component 28.0% (21/75) 1.6 3e-06 8.8e-05
GO:0071705 nitrogen compound transport 9.33% (7/75) 3.43 4e-06 0.000105
GO:0000938 GARP complex 2.67% (2/75) 9.0 4e-06 0.000107
GO:0015031 protein transport 8.0% (6/75) 3.81 5e-06 0.000114
GO:0033036 macromolecule localization 8.0% (6/75) 3.62 1e-05 0.000189
GO:0008104 protein localization 8.0% (6/75) 3.62 1e-05 0.000189
GO:0070727 cellular macromolecule localization 8.0% (6/75) 3.62 1e-05 0.000189
GO:0045184 establishment of protein localization 8.0% (6/75) 3.65 9e-06 0.000197
GO:0032991 protein-containing complex 14.67% (11/75) 2.29 1.4e-05 0.000257
GO:0042147 retrograde transport, endosome to Golgi 2.67% (2/75) 7.0 0.000105 0.001694
GO:0016482 cytosolic transport 2.67% (2/75) 7.0 0.000105 0.001694
GO:0098796 membrane protein complex 6.67% (5/75) 3.32 0.000151 0.00232
GO:0015693 magnesium ion transport 2.67% (2/75) 6.54 0.000205 0.002785
GO:0015095 magnesium ion transmembrane transporter activity 2.67% (2/75) 6.54 0.000205 0.002785
GO:0030001 metal ion transport 5.33% (4/75) 3.78 0.000215 0.002804
GO:0046873 metal ion transmembrane transporter activity 5.33% (4/75) 3.81 0.000199 0.002932
GO:0048193 Golgi vesicle transport 4.0% (3/75) 4.61 0.000263 0.003296
GO:0030126 COPI vesicle coat 2.67% (2/75) 6.19 0.000339 0.004098
GO:0007010 cytoskeleton organization 4.0% (3/75) 4.43 0.000374 0.004367
GO:0016020 membrane 12.0% (9/75) 1.98 0.00046 0.005196
GO:0009987 cellular process 34.67% (26/75) 0.91 0.000636 0.005993
GO:0006084 acetyl-CoA metabolic process 2.67% (2/75) 5.83 0.000566 0.005999
GO:0008092 cytoskeletal protein binding 5.33% (4/75) 3.39 0.000595 0.006114
GO:0035383 thioester metabolic process 2.67% (2/75) 5.75 0.000632 0.006122
GO:0006637 acyl-CoA metabolic process 2.67% (2/75) 5.75 0.000632 0.006122
GO:0003924 GTPase activity 5.33% (4/75) 3.41 0.000562 0.006141
GO:0016197 endosomal transport 2.67% (2/75) 5.47 0.00093 0.008525
GO:0022890 inorganic cation transmembrane transporter activity 5.33% (4/75) 3.15 0.001117 0.009467
GO:0032561 guanyl ribonucleotide binding 5.33% (4/75) 3.15 0.001117 0.009467
GO:0005525 GTP binding 5.33% (4/75) 3.15 0.001117 0.009467
GO:0019001 guanyl nucleotide binding 5.33% (4/75) 3.1 0.001266 0.010469
GO:0006812 monoatomic cation transport 5.33% (4/75) 3.04 0.00145 0.011704
GO:0030120 vesicle coat 2.67% (2/75) 5.09 0.001586 0.012501
GO:0031332 RNAi effector complex 1.33% (1/75) 9.0 0.001956 0.013265
GO:0016442 RISC complex 1.33% (1/75) 9.0 0.001956 0.013265
GO:0051011 microtubule minus-end binding 1.33% (1/75) 9.0 0.001956 0.013265
GO:0033865 nucleoside bisphosphate metabolic process 2.67% (2/75) 5.0 0.001803 0.013291
GO:0033875 ribonucleoside bisphosphate metabolic process 2.67% (2/75) 5.0 0.001803 0.013291
GO:0034032 purine nucleoside bisphosphate metabolic process 2.67% (2/75) 5.0 0.001803 0.013291
GO:0008324 monoatomic cation transmembrane transporter activity 5.33% (4/75) 2.93 0.001924 0.013876
GO:0006811 monoatomic ion transport 5.33% (4/75) 2.85 0.002373 0.015772
GO:0015318 inorganic molecular entity transmembrane transporter activity 5.33% (4/75) 2.81 0.002622 0.017096
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.67% (5/75) 2.39 0.002721 0.017406
GO:0016462 pyrophosphatase activity 6.67% (5/75) 2.3 0.003509 0.022032
GO:0016817 hydrolase activity, acting on acid anhydrides 6.67% (5/75) 2.26 0.003929 0.022573
GO:0004163 diphosphomevalonate decarboxylase activity 1.33% (1/75) 8.0 0.003909 0.022849
GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway 1.33% (1/75) 8.0 0.003909 0.022849
GO:0015075 monoatomic ion transmembrane transporter activity 5.33% (4/75) 2.65 0.003885 0.023517
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.67% (5/75) 2.27 0.003867 0.023832
GO:0003674 molecular_function 61.33% (46/75) 0.43 0.004575 0.025013
GO:1901265 nucleoside phosphate binding 18.67% (14/75) 1.11 0.004556 0.025317
GO:0000166 nucleotide binding 18.67% (14/75) 1.11 0.004556 0.025317
GO:0005801 cis-Golgi network 1.33% (1/75) 7.41 0.005858 0.03103
GO:0047750 cholestenol delta-isomerase activity 1.33% (1/75) 7.41 0.005858 0.03103
GO:1901363 heterocyclic compound binding 18.67% (14/75) 1.05 0.006498 0.033887
GO:0036094 small molecule binding 18.67% (14/75) 1.04 0.00695 0.035696
GO:0017076 purine nucleotide binding 17.33% (13/75) 1.09 0.007349 0.037184
GO:0009240 isopentenyl diphosphate biosynthetic process 1.33% (1/75) 7.0 0.007803 0.03779
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity 1.33% (1/75) 7.0 0.007803 0.03779
GO:0046490 isopentenyl diphosphate metabolic process 1.33% (1/75) 7.0 0.007803 0.03779
GO:0099023 vesicle tethering complex 2.67% (2/75) 3.89 0.008141 0.03887
GO:0003979 UDP-glucose 6-dehydrogenase activity 1.33% (1/75) 6.68 0.009745 0.043467
GO:0045254 pyruvate dehydrogenase complex 1.33% (1/75) 6.68 0.009745 0.043467
GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds 1.33% (1/75) 6.68 0.009745 0.043467
GO:0051503 adenine nucleotide transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0015867 ATP transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0015866 ADP transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0070652 HAUS complex 1.33% (1/75) 6.41 0.011682 0.04352
GO:0072530 purine-containing compound transmembrane transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0015865 purine nucleotide transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0015868 purine ribonucleotide transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0016125 sterol metabolic process 1.33% (1/75) 6.41 0.011682 0.04352
GO:1901679 nucleotide transmembrane transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:1990544 mitochondrial ATP transmembrane transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0097354 prenylation 1.33% (1/75) 6.41 0.011682 0.04352
GO:0018342 protein prenylation 1.33% (1/75) 6.41 0.011682 0.04352
GO:0140021 mitochondrial ADP transmembrane transport 1.33% (1/75) 6.41 0.011682 0.04352
GO:0051287 NAD binding 2.67% (2/75) 3.61 0.011871 0.043741
GO:0003779 actin binding 2.67% (2/75) 3.79 0.009314 0.043853
GO:0008150 biological_process 44.0% (33/75) 0.53 0.009539 0.044297
GO:0006996 organelle organization 4.0% (3/75) 2.76 0.010118 0.044544
GO:0035639 purine ribonucleoside triphosphate binding 14.67% (11/75) 1.11 0.012304 0.044849
GO:0048583 regulation of response to stimulus 2.67% (2/75) 3.66 0.011075 0.048133
GO:0051225 spindle assembly 1.33% (1/75) 6.19 0.013616 0.048589
GO:0008318 protein prenyltransferase activity 1.33% (1/75) 6.19 0.013616 0.048589
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (75) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms