Coexpression cluster: Cluster_27 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006412 translation 60.19% (124/206) 6.09 0.0 0.0
GO:0043228 non-membrane-bounded organelle 58.74% (121/206) 5.75 0.0 0.0
GO:0043226 organelle 59.22% (122/206) 4.58 0.0 0.0
GO:0003735 structural constituent of ribosome 63.59% (131/206) 6.15 0.0 0.0
GO:0043170 macromolecule metabolic process 67.48% (139/206) 2.6 0.0 0.0
GO:0043043 peptide biosynthetic process 60.19% (124/206) 6.06 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 65.05% (134/206) 3.79 0.0 0.0
GO:0019538 protein metabolic process 60.68% (125/206) 2.92 0.0 0.0
GO:0009987 cellular process 74.76% (154/206) 2.02 0.0 0.0
GO:0009059 macromolecule biosynthetic process 63.11% (130/206) 5.2 0.0 0.0
GO:0009058 biosynthetic process 64.08% (132/206) 4.02 0.0 0.0
GO:0008152 metabolic process 69.42% (143/206) 1.98 0.0 0.0
GO:0006807 nitrogen compound metabolic process 66.02% (136/206) 2.39 0.0 0.0
GO:0006518 peptide metabolic process 60.19% (124/206) 5.97 0.0 0.0
GO:0005840 ribosome 57.77% (119/206) 6.14 0.0 0.0
GO:0005575 cellular_component 73.3% (151/206) 2.98 0.0 0.0
GO:0043229 intracellular organelle 59.22% (122/206) 4.58 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 58.74% (121/206) 5.75 0.0 0.0
GO:0043603 amide metabolic process 60.19% (124/206) 5.8 0.0 0.0
GO:1990904 ribonucleoprotein complex 18.45% (38/206) 5.32 0.0 0.0
GO:0044391 ribosomal subunit 15.53% (32/206) 6.29 0.0 0.0
GO:1901576 organic substance biosynthetic process 64.08% (132/206) 4.14 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 61.17% (126/206) 5.06 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 61.65% (127/206) 2.65 0.0 0.0
GO:0110165 cellular anatomical entity 61.65% (127/206) 3.18 0.0 0.0
GO:0071704 organic substance metabolic process 68.45% (141/206) 2.05 0.0 0.0
GO:0043604 amide biosynthetic process 60.19% (124/206) 5.95 0.0 0.0
GO:0044237 cellular metabolic process 68.93% (142/206) 2.53 0.0 0.0
GO:0005198 structural molecule activity 63.59% (131/206) 5.94 0.0 0.0
GO:0044238 primary metabolic process 66.02% (136/206) 2.11 0.0 0.0
GO:0044249 cellular biosynthetic process 64.08% (132/206) 4.25 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 61.17% (126/206) 4.87 0.0 0.0
GO:0008150 biological_process 76.7% (158/206) 1.33 0.0 0.0
GO:0015934 large ribosomal subunit 9.22% (19/206) 6.2 0.0 0.0
GO:0003674 molecular_function 81.07% (167/206) 0.83 0.0 0.0
GO:0032991 protein-containing complex 21.36% (44/206) 2.83 0.0 0.0
GO:0015935 small ribosomal subunit 6.31% (13/206) 6.43 0.0 0.0
GO:0003723 RNA binding 16.02% (33/206) 3.05 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 3.88% (8/206) 6.54 0.0 0.0
GO:0003676 nucleic acid binding 19.42% (40/206) 1.49 0.0 0.0
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.94% (4/206) 6.95 0.0 0.0
GO:0006414 translational elongation 2.91% (6/206) 5.0 0.0 0.0
GO:0000470 maturation of LSU-rRNA 1.94% (4/206) 6.54 0.0 0.0
GO:0070585 protein localization to mitochondrion 1.94% (4/206) 5.29 3e-06 2.4e-05
GO:0072655 establishment of protein localization to mitochondrion 1.94% (4/206) 5.29 3e-06 2.4e-05
GO:0030150 protein import into mitochondrial matrix 1.46% (3/206) 6.32 5e-06 4.2e-05
GO:1990542 mitochondrial transmembrane transport 1.46% (3/206) 5.95 1.3e-05 9.8e-05
GO:0022613 ribonucleoprotein complex biogenesis 1.94% (4/206) 4.73 1.5e-05 0.000115
GO:0051438 regulation of ubiquitin-protein transferase activity 1.46% (3/206) 5.8 1.8e-05 0.000124
GO:0044743 protein transmembrane import into intracellular organelle 1.46% (3/206) 5.8 1.8e-05 0.000124
GO:1903320 regulation of protein modification by small protein conjugation or removal 1.46% (3/206) 5.8 1.8e-05 0.000124
GO:1904666 regulation of ubiquitin protein ligase activity 1.46% (3/206) 5.8 1.8e-05 0.000124
GO:0031396 regulation of protein ubiquitination 1.46% (3/206) 5.8 1.8e-05 0.000124
GO:1901873 regulation of post-translational protein modification 1.46% (3/206) 5.67 2.4e-05 0.000167
GO:0071806 protein transmembrane transport 1.46% (3/206) 5.54 3.2e-05 0.000217
GO:0006364 rRNA processing 2.43% (5/206) 3.67 4.8e-05 0.000313
GO:0031428 box C/D RNP complex 1.46% (3/206) 5.32 5.3e-05 0.000344
GO:0006839 mitochondrial transport 1.94% (4/206) 4.15 7.7e-05 0.00049
GO:0016072 rRNA metabolic process 2.43% (5/206) 3.5 8.3e-05 0.000519
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 1.46% (3/206) 4.88 0.000139 0.000853
GO:0006396 RNA processing 4.37% (9/206) 2.19 0.000181 0.001093
GO:0030515 snoRNA binding 1.46% (3/206) 4.73 0.000189 0.001106
GO:0032040 small-subunit processome 1.46% (3/206) 4.73 0.000189 0.001106
GO:0042254 ribosome biogenesis 1.46% (3/206) 4.67 0.000218 0.001256
GO:0030684 preribosome 1.46% (3/206) 4.6 0.00025 0.001416
GO:0002182 cytoplasmic translational elongation 0.97% (2/206) 6.22 0.000284 0.001495
GO:0022884 macromolecule transmembrane transporter activity 0.97% (2/206) 6.22 0.000284 0.001495
GO:0140318 protein transporter activity 0.97% (2/206) 6.22 0.000284 0.001495
GO:0000027 ribosomal large subunit assembly 0.97% (2/206) 6.22 0.000284 0.001495
GO:0008320 protein transmembrane transporter activity 0.97% (2/206) 6.22 0.000284 0.001495
GO:0001522 pseudouridine synthesis 1.46% (3/206) 4.48 0.000322 0.001671
GO:0022618 protein-RNA complex assembly 1.46% (3/206) 4.32 0.000454 0.002319
GO:0072594 establishment of protein localization to organelle 1.94% (4/206) 3.45 0.000504 0.002541
GO:0033365 protein localization to organelle 1.94% (4/206) 3.43 0.000533 0.00265
GO:0051443 positive regulation of ubiquitin-protein transferase activity 0.97% (2/206) 5.73 0.000593 0.002694
GO:0055106 ubiquitin-protein transferase regulator activity 0.97% (2/206) 5.73 0.000593 0.002694
GO:1904668 positive regulation of ubiquitin protein ligase activity 0.97% (2/206) 5.73 0.000593 0.002694
GO:1903322 positive regulation of protein modification by small protein conjugation or removal 0.97% (2/206) 5.73 0.000593 0.002694
GO:1901875 positive regulation of post-translational protein modification 0.97% (2/206) 5.73 0.000593 0.002694
GO:0031398 positive regulation of protein ubiquitination 0.97% (2/206) 5.73 0.000593 0.002694
GO:0097027 ubiquitin-protein transferase activator activity 0.97% (2/206) 5.73 0.000593 0.002694
GO:0019843 rRNA binding 1.46% (3/206) 4.17 0.000615 0.002761
GO:0071826 protein-RNA complex organization 1.46% (3/206) 4.12 0.000676 0.002998
GO:0005742 mitochondrial outer membrane translocase complex 0.97% (2/206) 5.54 0.000788 0.003371
GO:0098799 outer mitochondrial membrane protein complex 0.97% (2/206) 5.54 0.000788 0.003371
GO:0010997 anaphase-promoting complex binding 0.97% (2/206) 5.54 0.000788 0.003371
GO:0034470 ncRNA processing 2.43% (5/206) 2.73 0.00099 0.004186
GO:0044085 cellular component biogenesis 1.94% (4/206) 3.15 0.001117 0.004671
GO:0051338 regulation of transferase activity 1.46% (3/206) 3.84 0.001212 0.005011
GO:0008135 translation factor activity, RNA binding 1.94% (4/206) 3.1 0.001273 0.00509
GO:0090079 translation regulator activity, nucleic acid binding 1.94% (4/206) 3.1 0.001273 0.00509
GO:0005741 mitochondrial outer membrane 0.97% (2/206) 5.22 0.001257 0.00514
GO:0045182 translation regulator activity 1.94% (4/206) 3.0 0.001628 0.006442
GO:0031399 regulation of protein modification process 1.46% (3/206) 3.57 0.002084 0.008157
GO:0005730 nucleolus 0.97% (2/206) 4.84 0.002156 0.008351
GO:0031401 positive regulation of protein modification process 0.97% (2/206) 4.73 0.002506 0.009607
GO:0051347 positive regulation of transferase activity 0.97% (2/206) 4.63 0.002882 0.010932
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.46% (3/206) 3.37 0.003101 0.011643
GO:0031970 organelle envelope lumen 0.97% (2/206) 4.54 0.003282 0.011957
GO:0005758 mitochondrial intermembrane space 0.97% (2/206) 4.54 0.003282 0.011957
GO:0016859 cis-trans isomerase activity 1.46% (3/206) 3.34 0.003267 0.012143
GO:0016070 RNA metabolic process 5.34% (11/206) 1.38 0.003714 0.013399
GO:0098798 mitochondrial protein-containing complex 1.46% (3/206) 3.27 0.003797 0.013566
GO:0050790 regulation of catalytic activity 1.46% (3/206) 3.15 0.004792 0.016956
GO:0051247 positive regulation of protein metabolic process 0.97% (2/206) 4.22 0.005123 0.017786
GO:0009982 pseudouridine synthase activity 0.97% (2/206) 4.22 0.005123 0.017786
GO:0016853 isomerase activity 2.43% (5/206) 2.18 0.005262 0.018098
GO:0007008 outer mitochondrial membrane organization 0.49% (1/206) 7.54 0.005374 0.018143
GO:0045040 protein insertion into mitochondrial outer membrane 0.49% (1/206) 7.54 0.005374 0.018143
GO:0065009 regulation of molecular function 1.46% (3/206) 3.04 0.00593 0.019839
GO:0034660 ncRNA metabolic process 2.43% (5/206) 2.1 0.006528 0.021643
GO:0043085 positive regulation of catalytic activity 0.97% (2/206) 3.95 0.007338 0.023897
GO:0006413 translational initiation 0.97% (2/206) 3.95 0.007338 0.023897
GO:0031974 membrane-enclosed lumen 0.97% (2/206) 3.9 0.007948 0.025214
GO:0043233 organelle lumen 0.97% (2/206) 3.9 0.007948 0.025214
GO:0070013 intracellular organelle lumen 0.97% (2/206) 3.9 0.007948 0.025214
GO:0044093 positive regulation of molecular function 0.97% (2/206) 3.78 0.009234 0.028797
GO:0031968 organelle outer membrane 0.97% (2/206) 3.78 0.009234 0.028797
GO:0042273 ribosomal large subunit biogenesis 0.49% (1/206) 6.54 0.010719 0.0326
GO:1990610 acetolactate synthase regulator activity 0.49% (1/206) 6.54 0.010719 0.0326
GO:0003746 translation elongation factor activity 0.97% (2/206) 3.68 0.010606 0.032798
GO:0051246 regulation of protein metabolic process 1.46% (3/206) 2.68 0.011645 0.035127
GO:0016776 phosphotransferase activity, phosphate group as acceptor 0.97% (2/206) 3.54 0.012821 0.038359
GO:0031966 mitochondrial membrane 0.97% (2/206) 3.45 0.0144 0.042394
GO:0019205 nucleobase-containing compound kinase activity 0.97% (2/206) 3.45 0.0144 0.042394
GO:0019867 outer membrane 0.97% (2/206) 3.37 0.016058 0.044431
GO:0051444 negative regulation of ubiquitin-protein transferase activity 0.49% (1/206) 5.95 0.016035 0.044705
GO:0032543 mitochondrial translation 0.49% (1/206) 5.95 0.016035 0.044705
GO:0031397 negative regulation of protein ubiquitination 0.49% (1/206) 5.95 0.016035 0.044705
GO:1901874 negative regulation of post-translational protein modification 0.49% (1/206) 5.95 0.016035 0.044705
GO:1903321 negative regulation of protein modification by small protein conjugation or removal 0.49% (1/206) 5.95 0.016035 0.044705
GO:1904667 negative regulation of ubiquitin protein ligase activity 0.49% (1/206) 5.95 0.016035 0.044705
GO:0005853 eukaryotic translation elongation factor 1 complex 0.49% (1/206) 5.95 0.016035 0.044705
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (206) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms