Coexpression cluster: Cluster_3 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003824 catalytic activity 46.5% (73/157) 0.99 0.0 0.0
GO:0003674 molecular_function 67.52% (106/157) 0.56 0.0 6e-06
GO:0005874 microtubule 3.18% (5/157) 5.5 0.0 6e-06
GO:0099513 polymeric cytoskeletal fiber 3.18% (5/157) 5.5 0.0 6e-06
GO:0099512 supramolecular fiber 3.18% (5/157) 5.5 0.0 6e-06
GO:0099081 supramolecular polymer 3.18% (5/157) 5.5 0.0 6e-06
GO:0005200 structural constituent of cytoskeleton 2.55% (4/157) 6.35 0.0 9e-06
GO:0099080 supramolecular complex 3.18% (5/157) 5.25 0.0 1.2e-05
GO:0008150 biological_process 49.04% (77/157) 0.68 1e-06 4.8e-05
GO:0043168 anion binding 21.02% (33/157) 1.27 2e-06 8.2e-05
GO:0035639 purine ribonucleoside triphosphate binding 17.83% (28/157) 1.39 2e-06 0.000106
GO:0071704 organic substance metabolic process 31.21% (49/157) 0.91 4e-06 0.000149
GO:0036094 small molecule binding 21.02% (33/157) 1.21 4e-06 0.000151
GO:1901363 heterocyclic compound binding 20.38% (32/157) 1.18 9e-06 0.000281
GO:0007017 microtubule-based process 3.82% (6/157) 3.66 9e-06 0.000291
GO:0008152 metabolic process 31.85% (50/157) 0.86 1e-05 0.000292
GO:0032555 purine ribonucleotide binding 17.83% (28/157) 1.2 3e-05 0.000729
GO:1901265 nucleoside phosphate binding 19.11% (30/157) 1.15 2.9e-05 0.000742
GO:0000166 nucleotide binding 19.11% (30/157) 1.15 2.9e-05 0.000742
GO:0032553 ribonucleotide binding 17.83% (28/157) 1.18 3.7e-05 0.000867
GO:0097367 carbohydrate derivative binding 17.83% (28/157) 1.17 4.3e-05 0.000955
GO:0097159 organic cyclic compound binding 29.3% (46/157) 0.8 6.7e-05 0.001412
GO:0017076 purine nucleotide binding 17.83% (28/157) 1.13 7e-05 0.001418
GO:0009987 cellular process 31.21% (49/157) 0.76 8.2e-05 0.001581
GO:0016773 phosphotransferase activity, alcohol group as acceptor 11.46% (18/157) 1.44 0.00012 0.002238
GO:0004672 protein kinase activity 10.83% (17/157) 1.48 0.000135 0.002323
GO:0036211 protein modification process 13.38% (21/157) 1.3 0.00013 0.002328
GO:0044238 primary metabolic process 26.75% (42/157) 0.81 0.000142 0.002361
GO:0003924 GTPase activity 3.82% (6/157) 2.93 0.000147 0.002363
GO:0016301 kinase activity 11.46% (18/157) 1.39 0.000191 0.002868
GO:0043167 ion binding 24.2% (38/157) 0.85 0.000188 0.002912
GO:0005524 ATP binding 14.01% (22/157) 1.18 0.000292 0.004249
GO:0006468 protein phosphorylation 10.19% (16/157) 1.43 0.000327 0.004606
GO:0032561 guanyl ribonucleotide binding 3.82% (6/157) 2.66 0.000398 0.004996
GO:0005525 GTP binding 3.82% (6/157) 2.66 0.000398 0.004996
GO:0043412 macromolecule modification 13.38% (21/157) 1.18 0.000381 0.005063
GO:0016310 phosphorylation 10.19% (16/157) 1.41 0.000377 0.005154
GO:0019001 guanyl nucleotide binding 3.82% (6/157) 2.62 0.000476 0.005823
GO:0016772 transferase activity, transferring phosphorus-containing groups 11.46% (18/157) 1.22 0.000734 0.008747
GO:0006796 phosphate-containing compound metabolic process 11.46% (18/157) 1.19 0.000972 0.011019
GO:0006793 phosphorus metabolic process 11.46% (18/157) 1.18 0.001 0.011076
GO:0017111 ribonucleoside triphosphate phosphatase activity 5.1% (8/157) 2.0 0.000954 0.011091
GO:0005488 binding 40.76% (64/157) 0.48 0.001189 0.012282
GO:0016787 hydrolase activity 14.01% (22/157) 1.03 0.001163 0.012286
GO:0006629 lipid metabolic process 5.73% (9/157) 1.82 0.001139 0.012312
GO:0016462 pyrophosphatase activity 5.1% (8/157) 1.91 0.001393 0.014078
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 5.1% (8/157) 1.88 0.001608 0.015904
GO:0016817 hydrolase activity, acting on acid anhydrides 5.1% (8/157) 1.88 0.001646 0.015943
GO:0008610 lipid biosynthetic process 3.82% (6/157) 2.26 0.0017 0.016133
GO:0032559 adenyl ribonucleotide binding 14.01% (22/157) 0.96 0.001974 0.018357
GO:0016866 intramolecular transferase activity 1.91% (3/157) 3.54 0.002235 0.020381
GO:0016491 oxidoreductase activity 9.55% (15/157) 1.17 0.002851 0.025492
GO:0044237 cellular metabolic process 19.75% (31/157) 0.73 0.003139 0.027543
GO:0008446 GDP-mannose 4,6-dehydratase activity 0.64% (1/157) 7.93 0.004096 0.030229
GO:0001735 prenylcysteine oxidase activity 0.64% (1/157) 7.93 0.004096 0.030229
GO:0042219 cellular modified amino acid catabolic process 0.64% (1/157) 7.93 0.004096 0.030229
GO:0005657 replication fork 0.64% (1/157) 7.93 0.004096 0.030229
GO:0000492 box C/D snoRNP assembly 0.64% (1/157) 7.93 0.004096 0.030229
GO:0030329 prenylcysteine metabolic process 0.64% (1/157) 7.93 0.004096 0.030229
GO:0030328 prenylcysteine catabolic process 0.64% (1/157) 7.93 0.004096 0.030229
GO:0030554 adenyl nucleotide binding 14.01% (22/157) 0.89 0.003625 0.031219
GO:0008202 steroid metabolic process 1.27% (2/157) 4.41 0.003985 0.033693
GO:0038023 signaling receptor activity 1.91% (3/157) 3.23 0.004095 0.034004
GO:0016740 transferase activity 16.56% (26/157) 0.77 0.004779 0.03472
GO:0060089 molecular transducer activity 1.91% (3/157) 3.14 0.004873 0.03486
GO:0005789 endoplasmic reticulum membrane 1.27% (2/157) 4.18 0.00547 0.038538
GO:1901564 organonitrogen compound metabolic process 16.56% (26/157) 0.75 0.0057 0.039563
GO:0016174 NAD(P)H oxidase H2O2-forming activity 0.64% (1/157) 6.93 0.008174 0.045252
GO:0070818 protoporphyrinogen oxidase activity 0.64% (1/157) 6.93 0.008174 0.045252
GO:0004459 L-lactate dehydrogenase activity 0.64% (1/157) 6.93 0.008174 0.045252
GO:0004457 lactate dehydrogenase activity 0.64% (1/157) 6.93 0.008174 0.045252
GO:0000491 small nucleolar ribonucleoprotein complex assembly 0.64% (1/157) 6.93 0.008174 0.045252
GO:0009723 response to ethylene 0.64% (1/157) 6.93 0.008174 0.045252
GO:0033061 DNA recombinase mediator complex 0.64% (1/157) 6.93 0.008174 0.045252
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity 0.64% (1/157) 6.93 0.008174 0.045252
GO:0051740 ethylene binding 0.64% (1/157) 6.93 0.008174 0.045252
GO:0038199 ethylene receptor activity 0.64% (1/157) 6.93 0.008174 0.045252
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex 0.64% (1/157) 6.93 0.008174 0.045252
GO:0006807 nitrogen compound metabolic process 19.75% (31/157) 0.65 0.006975 0.047697
GO:0019538 protein metabolic process 14.01% (22/157) 0.81 0.007086 0.047756
GO:0140096 catalytic activity, acting on a protein 12.1% (19/157) 0.85 0.009025 0.049371
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (157) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms