Coexpression cluster: Cluster_103 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 62.04% (85/137) 1.09 0.0 0.0
GO:0003674 molecular_function 74.45% (102/137) 0.7 0.0 0.0
GO:0017056 structural constituent of nuclear pore 4.38% (6/137) 6.39 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 11.68% (16/137) 3.01 0.0 0.0
GO:0032991 protein-containing complex 15.33% (21/137) 2.35 0.0 0.0
GO:0003676 nucleic acid binding 23.36% (32/137) 1.76 0.0 0.0
GO:0097159 organic cyclic compound binding 38.69% (53/137) 1.2 0.0 0.0
GO:0006259 DNA metabolic process 8.76% (12/137) 3.53 0.0 0.0
GO:0008094 ATP-dependent activity, acting on DNA 5.84% (8/137) 4.64 0.0 0.0
GO:0140657 ATP-dependent activity 10.22% (14/137) 3.03 0.0 0.0
GO:0140097 catalytic activity, acting on DNA 6.57% (9/137) 4.02 0.0 0.0
GO:0005643 nuclear pore 3.65% (5/137) 5.93 0.0 1e-06
GO:0006281 DNA repair 6.57% (9/137) 3.77 0.0 1e-06
GO:0005575 cellular_component 25.55% (35/137) 1.46 0.0 1e-06
GO:0006974 DNA damage response 6.57% (9/137) 3.71 0.0 1e-06
GO:0140513 nuclear protein-containing complex 7.3% (10/137) 3.39 0.0 1e-06
GO:0090304 nucleic acid metabolic process 13.14% (18/137) 2.24 0.0 2e-06
GO:0033554 cellular response to stress 6.57% (9/137) 3.49 0.0 3e-06
GO:0051716 cellular response to stimulus 6.57% (9/137) 3.43 0.0 5e-06
GO:0005515 protein binding 26.28% (36/137) 1.26 0.0 1e-05
GO:0016817 hydrolase activity, acting on acid anhydrides 8.76% (12/137) 2.66 1e-06 1.1e-05
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8.76% (12/137) 2.66 1e-06 1.1e-05
GO:0035639 purine ribonucleoside triphosphate binding 19.71% (27/137) 1.53 0.0 1.1e-05
GO:0006310 DNA recombination 3.65% (5/137) 4.96 1e-06 1.2e-05
GO:1901363 heterocyclic compound binding 22.63% (31/137) 1.33 1e-06 2.4e-05
GO:1901265 nucleoside phosphate binding 21.9% (30/137) 1.34 2e-06 2.5e-05
GO:0000166 nucleotide binding 21.9% (30/137) 1.34 2e-06 2.5e-05
GO:0006913 nucleocytoplasmic transport 3.65% (5/137) 4.72 1e-06 2.5e-05
GO:0051169 nuclear transport 3.65% (5/137) 4.67 2e-06 2.6e-05
GO:0036094 small molecule binding 22.63% (31/137) 1.32 1e-06 2.7e-05
GO:0006139 nucleobase-containing compound metabolic process 13.14% (18/137) 1.9 2e-06 2.7e-05
GO:0017111 ribonucleoside triphosphate phosphatase activity 8.03% (11/137) 2.66 2e-06 2.8e-05
GO:0016462 pyrophosphatase activity 8.03% (11/137) 2.57 3e-06 4.2e-05
GO:1901360 organic cyclic compound metabolic process 13.87% (19/137) 1.77 3e-06 4.4e-05
GO:0005524 ATP binding 17.52% (24/137) 1.5 4e-06 5.2e-05
GO:0017076 purine nucleotide binding 20.44% (28/137) 1.32 5e-06 6.9e-05
GO:0046483 heterocycle metabolic process 13.14% (18/137) 1.77 6e-06 7.8e-05
GO:0032555 purine ribonucleotide binding 19.71% (27/137) 1.34 6e-06 8e-05
GO:0000724 double-strand break repair via homologous recombination 2.19% (3/137) 6.25 7e-06 8.5e-05
GO:0106068 SUMO ligase complex 2.19% (3/137) 6.25 7e-06 8.5e-05
GO:0030915 Smc5-Smc6 complex 2.19% (3/137) 6.25 7e-06 8.5e-05
GO:0032553 ribonucleotide binding 19.71% (27/137) 1.32 8e-06 9.1e-05
GO:0006725 cellular aromatic compound metabolic process 13.14% (18/137) 1.72 9e-06 0.000102
GO:0097367 carbohydrate derivative binding 19.71% (27/137) 1.31 9e-06 0.000103
GO:0000725 recombinational repair 2.19% (3/137) 6.13 1e-05 0.000103
GO:0016887 ATP hydrolysis activity 5.84% (8/137) 2.92 1.2e-05 0.000125
GO:1990234 transferase complex 4.38% (6/137) 3.54 1.4e-05 0.000143
GO:0043168 anion binding 20.44% (28/137) 1.23 1.8e-05 0.000181
GO:0003677 DNA binding 12.41% (17/137) 1.69 2.2e-05 0.000218
GO:1902494 catalytic complex 5.84% (8/137) 2.75 2.8e-05 0.000274
GO:0046907 intracellular transport 5.11% (7/137) 3.0 3e-05 0.000281
GO:0030554 adenyl nucleotide binding 18.25% (25/137) 1.27 3.2e-05 0.000294
GO:0051649 establishment of localization in cell 5.11% (7/137) 2.99 3.2e-05 0.000298
GO:0008180 COP9 signalosome 1.46% (2/137) 7.54 3.8e-05 0.000341
GO:0051020 GTPase binding 2.19% (3/137) 5.47 4.1e-05 0.000353
GO:0031267 small GTPase binding 2.19% (3/137) 5.47 4.1e-05 0.000353
GO:0032559 adenyl ribonucleotide binding 17.52% (24/137) 1.29 4.1e-05 0.000362
GO:0006302 double-strand break repair 2.19% (3/137) 5.25 6.5e-05 0.000547
GO:0034641 cellular nitrogen compound metabolic process 13.14% (18/137) 1.48 8.2e-05 0.000673
GO:0009987 cellular process 32.12% (44/137) 0.8 8.8e-05 0.00071
GO:0043170 macromolecule metabolic process 22.63% (31/137) 1.02 9.3e-05 0.000738
GO:0003697 single-stranded DNA binding 2.19% (3/137) 5.01 0.000109 0.000855
GO:0016787 hydrolase activity 16.06% (22/137) 1.22 0.000171 0.001319
GO:0051641 cellular localization 5.11% (7/137) 2.52 0.000237 0.001798
GO:0140098 catalytic activity, acting on RNA 5.11% (7/137) 2.43 0.000352 0.002624
GO:0008150 biological_process 44.53% (61/137) 0.54 0.000387 0.002847
GO:0043167 ion binding 24.09% (33/137) 0.84 0.000525 0.0038
GO:0005634 nucleus 5.11% (7/137) 2.3 0.000589 0.004138
GO:0044238 primary metabolic process 26.28% (36/137) 0.78 0.000588 0.00419
GO:0006807 nitrogen compound metabolic process 22.63% (31/137) 0.85 0.000763 0.005286
GO:0034504 protein localization to nucleus 1.46% (2/137) 5.43 0.000964 0.006492
GO:0006606 protein import into nucleus 1.46% (2/137) 5.43 0.000964 0.006492
GO:0051170 import into nucleus 1.46% (2/137) 5.32 0.001122 0.007453
GO:0008641 ubiquitin-like modifier activating enzyme activity 1.46% (2/137) 5.13 0.001472 0.00965
GO:0051082 unfolded protein binding 2.19% (3/137) 3.74 0.001516 0.009803
GO:0019899 enzyme binding 2.19% (3/137) 3.67 0.001733 0.011061
GO:0043687 post-translational protein modification 4.38% (6/137) 2.18 0.002242 0.014123
GO:0016877 ligase activity, forming carbon-sulfur bonds 1.46% (2/137) 4.48 0.003604 0.018796
GO:0031123 RNA 3'-end processing 1.46% (2/137) 4.48 0.003604 0.018796
GO:0043227 membrane-bounded organelle 5.11% (7/137) 1.88 0.00315 0.018861
GO:0043231 intracellular membrane-bounded organelle 5.11% (7/137) 1.88 0.00315 0.018861
GO:0010387 COP9 signalosome assembly 0.73% (1/137) 8.13 0.003574 0.019047
GO:0019237 centromeric DNA binding 0.73% (1/137) 8.13 0.003574 0.019047
GO:0003689 DNA clamp loader activity 0.73% (1/137) 8.13 0.003574 0.019047
GO:0004333 fumarate hydratase activity 0.73% (1/137) 8.13 0.003574 0.019047
GO:0006106 fumarate metabolic process 0.73% (1/137) 8.13 0.003574 0.019047
GO:0005663 DNA replication factor C complex 0.73% (1/137) 8.13 0.003574 0.019047
GO:0019789 SUMO transferase activity 0.73% (1/137) 8.13 0.003574 0.019047
GO:0031307 obsolete integral component of mitochondrial outer membrane 0.73% (1/137) 8.13 0.003574 0.019047
GO:0000056 ribosomal small subunit export from nucleus 0.73% (1/137) 8.13 0.003574 0.019047
GO:0005198 structural molecule activity 4.38% (6/137) 2.08 0.003132 0.019226
GO:0006260 DNA replication 2.19% (3/137) 3.37 0.003108 0.019328
GO:0016874 ligase activity 2.92% (4/137) 2.72 0.003318 0.019622
GO:1903047 mitotic cell cycle process 1.46% (2/137) 4.43 0.003895 0.020099
GO:0006950 response to stress 7.3% (10/137) 1.44 0.004065 0.020537
GO:0022402 cell cycle process 2.19% (3/137) 3.24 0.004052 0.020689
GO:0003824 catalytic activity 33.58% (46/137) 0.52 0.004333 0.021667
GO:0071704 organic substance metabolic process 25.55% (35/137) 0.63 0.004806 0.023787
GO:0006099 tricarboxylic acid cycle 1.46% (2/137) 4.22 0.005166 0.025306
GO:0003723 RNA binding 5.84% (8/137) 1.59 0.005432 0.026344
GO:1902298 cell cycle DNA replication maintenance of fidelity 0.73% (1/137) 7.13 0.007135 0.028837
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity 0.73% (1/137) 7.13 0.007135 0.028837
GO:0097255 R2TP complex 0.73% (1/137) 7.13 0.007135 0.028837
GO:0045116 protein neddylation 0.73% (1/137) 7.13 0.007135 0.028837
GO:0000338 protein deneddylation 0.73% (1/137) 7.13 0.007135 0.028837
GO:0000054 ribosomal subunit export from nucleus 0.73% (1/137) 7.13 0.007135 0.028837
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex 0.73% (1/137) 7.13 0.007135 0.028837
GO:0033750 ribosome localization 0.73% (1/137) 7.13 0.007135 0.028837
GO:0000055 ribosomal large subunit export from nucleus 0.73% (1/137) 7.13 0.007135 0.028837
GO:1990426 mitotic recombination-dependent replication fork processing 0.73% (1/137) 7.13 0.007135 0.028837
GO:0004819 glutamine-tRNA ligase activity 0.73% (1/137) 7.13 0.007135 0.028837
GO:0006425 glutaminyl-tRNA aminoacylation 0.73% (1/137) 7.13 0.007135 0.028837
GO:0019781 NEDD8 activating enzyme activity 0.73% (1/137) 7.13 0.007135 0.028837
GO:0008139 nuclear localization sequence binding 0.73% (1/137) 7.13 0.007135 0.028837
GO:0008608 attachment of spindle microtubules to kinetochore 0.73% (1/137) 7.13 0.007135 0.028837
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 0.73% (1/137) 7.13 0.007135 0.028837
GO:1990505 mitotic DNA replication maintenance of fidelity 0.73% (1/137) 7.13 0.007135 0.028837
GO:0043226 organelle 6.57% (9/137) 1.41 0.007285 0.028963
GO:0043229 intracellular organelle 6.57% (9/137) 1.41 0.007285 0.028963
GO:0004386 helicase activity 2.19% (3/137) 2.89 0.007853 0.030963
GO:0005737 cytoplasm 2.92% (4/137) 2.44 0.006525 0.031331
GO:0016043 cellular component organization 5.11% (7/137) 1.67 0.006731 0.032006
GO:0008152 metabolic process 26.28% (36/137) 0.58 0.007063 0.033257
GO:0006996 organelle organization 2.92% (4/137) 2.3 0.009111 0.035637
GO:0043933 protein-containing complex organization 2.92% (4/137) 2.23 0.010699 0.037065
GO:0031297 replication fork processing 0.73% (1/137) 6.54 0.010684 0.037277
GO:0071163 DNA replication preinitiation complex assembly 0.73% (1/137) 6.54 0.010684 0.037277
GO:0003909 DNA ligase activity 0.73% (1/137) 6.54 0.010684 0.037277
GO:0051382 kinetochore assembly 0.73% (1/137) 6.54 0.010684 0.037277
GO:0051383 kinetochore organization 0.73% (1/137) 6.54 0.010684 0.037277
GO:0045005 DNA-templated DNA replication maintenance of fidelity 0.73% (1/137) 6.54 0.010684 0.037277
GO:0031503 protein-containing complex localization 0.73% (1/137) 6.54 0.010684 0.037277
GO:0000150 DNA strand exchange activity 0.73% (1/137) 6.54 0.010684 0.037277
GO:0003910 DNA ligase (ATP) activity 0.73% (1/137) 6.54 0.010684 0.037277
GO:0045239 tricarboxylic acid cycle enzyme complex 0.73% (1/137) 6.54 0.010684 0.037277
GO:0031125 rRNA 3'-end processing 0.73% (1/137) 6.54 0.010684 0.037277
GO:0016126 sterol biosynthetic process 0.73% (1/137) 6.54 0.010684 0.037277
GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.73% (1/137) 6.54 0.010684 0.037277
GO:0030174 regulation of DNA-templated DNA replication initiation 0.73% (1/137) 6.54 0.010684 0.037277
GO:0006457 protein folding 2.19% (3/137) 2.76 0.01011 0.039228
GO:0070646 protein modification by small protein removal 1.46% (2/137) 3.57 0.012339 0.042442
GO:0071840 cellular component organization or biogenesis 5.11% (7/137) 1.49 0.012808 0.043746
GO:0050896 response to stimulus 7.3% (10/137) 1.17 0.013958 0.047339
GO:0016886 ligase activity, forming phosphoric ester bonds 0.73% (1/137) 6.13 0.014219 0.047562
GO:0005854 nascent polypeptide-associated complex 0.73% (1/137) 6.13 0.014219 0.047562
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (137) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms