Coexpression cluster: Cluster_211 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 58.75% (47/80) 1.01 0.0 7e-06
GO:0140640 catalytic activity, acting on a nucleic acid 13.75% (11/80) 3.24 0.0 9e-06
GO:0016070 RNA metabolic process 13.75% (11/80) 2.75 1e-06 9.6e-05
GO:0008094 ATP-dependent activity, acting on DNA 6.25% (5/80) 4.73 1e-06 0.000132
GO:0090304 nucleic acid metabolic process 15.0% (12/80) 2.43 2e-06 0.000144
GO:0140658 ATP-dependent chromatin remodeler activity 5.0% (4/80) 5.48 2e-06 0.000162
GO:0006139 nucleobase-containing compound metabolic process 16.25% (13/80) 2.21 4e-06 0.000236
GO:0101005 deubiquitinase activity 5.0% (4/80) 4.84 1.2e-05 0.000484
GO:0005515 protein binding 28.75% (23/80) 1.39 1e-05 0.000495
GO:0046483 heterocycle metabolic process 16.25% (13/80) 2.07 1.1e-05 0.000502
GO:0019783 ubiquitin-like protein peptidase activity 5.0% (4/80) 4.78 1.5e-05 0.000524
GO:0006725 cellular aromatic compound metabolic process 16.25% (13/80) 2.03 1.6e-05 0.000531
GO:1901360 organic cyclic compound metabolic process 16.25% (13/80) 2.0 2e-05 0.000562
GO:0140097 catalytic activity, acting on DNA 6.25% (5/80) 3.95 1.9e-05 0.000582
GO:0003674 molecular_function 68.75% (55/80) 0.59 2.5e-05 0.000632
GO:0016071 mRNA metabolic process 6.25% (5/80) 3.88 2.4e-05 0.000643
GO:0008380 RNA splicing 5.0% (4/80) 4.26 5.9e-05 0.001383
GO:0140657 ATP-dependent activity 8.75% (7/80) 2.8 6.8e-05 0.001492
GO:0034641 cellular nitrogen compound metabolic process 16.25% (13/80) 1.79 8.9e-05 0.001869
GO:0006396 RNA processing 7.5% (6/80) 2.97 0.000122 0.002429
GO:0031326 regulation of cellular biosynthetic process 13.75% (11/80) 1.85 0.000225 0.002983
GO:0009889 regulation of biosynthetic process 13.75% (11/80) 1.85 0.000225 0.002983
GO:0006913 nucleocytoplasmic transport 3.75% (3/80) 4.76 0.00019 0.00302
GO:0006351 DNA-templated transcription 5.0% (4/80) 3.84 0.000184 0.00304
GO:0006397 mRNA processing 5.0% (4/80) 3.85 0.000179 0.003082
GO:0046907 intracellular transport 6.25% (5/80) 3.3 0.000163 0.003089
GO:0051649 establishment of localization in cell 6.25% (5/80) 3.28 0.000173 0.003121
GO:0004843 cysteine-type deubiquitinase activity 3.75% (3/80) 4.68 0.000224 0.003176
GO:0051169 nuclear transport 3.75% (3/80) 4.71 0.000212 0.003242
GO:0010556 regulation of macromolecule biosynthetic process 13.75% (11/80) 1.85 0.000223 0.003275
GO:0060255 regulation of macromolecule metabolic process 13.75% (11/80) 1.78 0.00033 0.004097
GO:0031323 regulation of cellular metabolic process 13.75% (11/80) 1.79 0.000323 0.004136
GO:0003676 nucleic acid binding 18.75% (15/80) 1.44 0.000348 0.004185
GO:0019222 regulation of metabolic process 13.75% (11/80) 1.77 0.000363 0.004234
GO:0000398 mRNA splicing, via spliceosome 3.75% (3/80) 4.28 0.00051 0.005784
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.75% (3/80) 4.13 0.000688 0.00759
GO:0051641 cellular localization 6.25% (5/80) 2.81 0.000753 0.008084
GO:0017056 structural constituent of nuclear pore 2.5% (2/80) 5.58 0.000797 0.008118
GO:0000375 RNA splicing, via transesterification reactions 3.75% (3/80) 4.06 0.000791 0.00826
GO:0010468 regulation of gene expression 12.5% (10/80) 1.72 0.000905 0.008982
GO:0032774 RNA biosynthetic process 5.0% (4/80) 3.18 0.001017 0.009617
GO:0140098 catalytic activity, acting on RNA 6.25% (5/80) 2.72 0.001008 0.00976
GO:0050794 regulation of cellular process 15.0% (12/80) 1.48 0.001169 0.010791
GO:0002100 tRNA wobble adenosine to inosine editing 1.25% (1/80) 8.9 0.002087 0.015632
GO:0008251 tRNA-specific adenosine deaminase activity 1.25% (1/80) 8.9 0.002087 0.015632
GO:0003972 RNA ligase (ATP) activity 1.25% (1/80) 8.9 0.002087 0.015632
GO:0030623 U5 snRNA binding 1.25% (1/80) 8.9 0.002087 0.015632
GO:0006382 adenosine to inosine editing 1.25% (1/80) 8.9 0.002087 0.015632
GO:0017070 U6 snRNA binding 1.25% (1/80) 8.9 0.002087 0.015632
GO:0008452 RNA ligase activity 1.25% (1/80) 8.9 0.002087 0.015632
GO:0004386 helicase activity 3.75% (3/80) 3.67 0.001737 0.015674
GO:0009057 macromolecule catabolic process 5.0% (4/80) 2.96 0.001787 0.015762
GO:0008150 biological_process 46.25% (37/80) 0.6 0.002254 0.016574
GO:0050789 regulation of biological process 15.0% (12/80) 1.39 0.001942 0.01676
GO:0065007 biological regulation 15.0% (12/80) 1.35 0.002393 0.017274
GO:0043170 macromolecule metabolic process 22.5% (18/80) 1.01 0.002724 0.019313
GO:0043632 modification-dependent macromolecule catabolic process 3.75% (3/80) 3.41 0.002879 0.019373
GO:0019941 modification-dependent protein catabolic process 3.75% (3/80) 3.41 0.002879 0.019373
GO:0006511 ubiquitin-dependent protein catabolic process 3.75% (3/80) 3.41 0.002879 0.019373
GO:0006109 regulation of carbohydrate metabolic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0010330 cellulose synthase complex 1.25% (1/80) 7.9 0.00417 0.020436
GO:0032885 regulation of polysaccharide biosynthetic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0010962 regulation of glucan biosynthetic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0032881 regulation of polysaccharide metabolic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0032950 regulation of beta-glucan metabolic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0000785 chromatin 1.25% (1/80) 7.9 0.00417 0.020436
GO:0004000 adenosine deaminase activity 1.25% (1/80) 7.9 0.00417 0.020436
GO:0051211 anisotropic cell growth 1.25% (1/80) 7.9 0.00417 0.020436
GO:0000245 spliceosomal complex assembly 1.25% (1/80) 7.9 0.00417 0.020436
GO:2001006 regulation of cellulose biosynthetic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 1.25% (1/80) 7.9 0.00417 0.020436
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 1.25% (1/80) 7.9 0.00417 0.020436
GO:0043255 regulation of carbohydrate biosynthetic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0030123 AP-3 adaptor complex 1.25% (1/80) 7.9 0.00417 0.020436
GO:0032951 regulation of beta-glucan biosynthetic process 1.25% (1/80) 7.9 0.00417 0.020436
GO:0006807 nitrogen compound metabolic process 23.75% (19/80) 0.92 0.004238 0.020519
GO:0080090 regulation of primary metabolic process 11.25% (9/80) 1.58 0.003161 0.020915
GO:0070646 protein modification by small protein removal 2.5% (2/80) 4.35 0.004375 0.020925
GO:0097159 organic cyclic compound binding 28.75% (23/80) 0.78 0.005258 0.023994
GO:0043231 intracellular membrane-bounded organelle 6.25% (5/80) 2.17 0.005214 0.024067
GO:0043227 membrane-bounded organelle 6.25% (5/80) 2.17 0.005214 0.024067
GO:0071705 nitrogen compound transport 5.0% (4/80) 2.53 0.005159 0.024381
GO:0051603 proteolysis involved in protein catabolic process 3.75% (3/80) 3.23 0.004091 0.024987
GO:0006886 intracellular protein transport 3.75% (3/80) 3.23 0.004091 0.024987
GO:0030117 membrane coat 2.5% (2/80) 4.44 0.003844 0.025017
GO:0009987 cellular process 31.25% (25/80) 0.76 0.004066 0.025624
GO:0016579 protein deubiquitination 2.5% (2/80) 4.41 0.004017 0.025723
GO:0008234 cysteine-type peptidase activity 3.75% (3/80) 3.05 0.005846 0.026374
GO:0034654 nucleobase-containing compound biosynthetic process 5.0% (4/80) 2.47 0.006022 0.02686
GO:0016049 cell growth 1.25% (1/80) 7.32 0.006248 0.026961
GO:0032968 positive regulation of transcription elongation by RNA polymerase II 1.25% (1/80) 7.32 0.006248 0.026961
GO:0034243 regulation of transcription elongation by RNA polymerase II 1.25% (1/80) 7.32 0.006248 0.026961
GO:0008033 tRNA processing 2.5% (2/80) 3.93 0.007735 0.032668
GO:0040007 growth 1.25% (1/80) 6.9 0.008322 0.032711
GO:0043138 3'-5' DNA helicase activity 1.25% (1/80) 6.9 0.008322 0.032711
GO:0032786 positive regulation of DNA-templated transcription, elongation 1.25% (1/80) 6.9 0.008322 0.032711
GO:0016886 ligase activity, forming phosphoric ester bonds 1.25% (1/80) 6.9 0.008322 0.032711
GO:0090114 COPII-coated vesicle budding 1.25% (1/80) 6.9 0.008322 0.032711
GO:0017069 snRNA binding 1.25% (1/80) 6.9 0.008322 0.032711
GO:0006900 vesicle budding from membrane 1.25% (1/80) 6.9 0.008322 0.032711
GO:0043687 post-translational protein modification 5.0% (4/80) 2.37 0.007664 0.032718
GO:0016043 cellular component organization 6.25% (5/80) 1.96 0.009311 0.03624
GO:0005634 nucleus 5.0% (4/80) 2.27 0.009661 0.037237
GO:0051171 regulation of nitrogen compound metabolic process 10.0% (8/80) 1.41 0.010408 0.037908
GO:0008270 zinc ion binding 6.25% (5/80) 1.94 0.009937 0.037931
GO:0097367 carbohydrate derivative binding 16.25% (13/80) 1.03 0.010078 0.038104
GO:0032549 ribonucleoside binding 1.25% (1/80) 6.58 0.010392 0.038199
GO:0001882 nucleoside binding 1.25% (1/80) 6.58 0.010392 0.038199
GO:0032991 protein-containing complex 8.75% (7/80) 1.54 0.010271 0.038466
GO:0015031 protein transport 3.75% (3/80) 2.71 0.010943 0.039493
GO:0006325 chromatin organization 2.5% (2/80) 3.62 0.011656 0.04169
GO:0019438 aromatic compound biosynthetic process 5.0% (4/80) 2.14 0.013246 0.046951
GO:0043933 protein-containing complex organization 3.75% (3/80) 2.59 0.013671 0.04803
GO:0018130 heterocycle biosynthetic process 5.0% (4/80) 2.11 0.014073 0.048162
GO:0010629 negative regulation of gene expression 2.5% (2/80) 3.48 0.014036 0.048454
GO:0071702 organic substance transport 5.0% (4/80) 2.11 0.013967 0.048641
GO:0045184 establishment of protein localization 3.75% (3/80) 2.56 0.014606 0.04914
GO:0007064 mitotic sister chromatid cohesion 1.25% (1/80) 6.1 0.014518 0.049263
GO:0031325 positive regulation of cellular metabolic process 2.5% (2/80) 3.35 0.016606 0.049945
GO:0071824 protein-DNA complex organization 2.5% (2/80) 3.35 0.016606 0.049945
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (80) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms