Coexpression cluster: Cluster_45 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 21.6% (46/213) 1.64 0.0 0.0
GO:0003700 DNA-binding transcription factor activity 11.74% (25/213) 2.32 0.0 0.0
GO:0003677 DNA binding 15.02% (32/213) 1.96 0.0 0.0
GO:0140110 transcription regulator activity 11.74% (25/213) 2.22 0.0 0.0
GO:0009889 regulation of biosynthetic process 13.62% (29/213) 1.83 0.0 0.0
GO:0031326 regulation of cellular biosynthetic process 13.62% (29/213) 1.83 0.0 0.0
GO:0010556 regulation of macromolecule biosynthetic process 13.62% (29/213) 1.84 0.0 0.0
GO:0010468 regulation of gene expression 13.62% (29/213) 1.84 0.0 0.0
GO:0060255 regulation of macromolecule metabolic process 13.62% (29/213) 1.77 0.0 0.0
GO:0031323 regulation of cellular metabolic process 13.62% (29/213) 1.77 0.0 0.0
GO:0005634 nucleus 7.04% (15/213) 2.77 0.0 0.0
GO:0019222 regulation of metabolic process 13.62% (29/213) 1.75 0.0 0.0
GO:0031048 regulatory ncRNA-mediated heterochromatin formation 2.35% (5/213) 5.23 0.0 5e-06
GO:0140718 facultative heterochromatin formation 2.35% (5/213) 5.23 0.0 5e-06
GO:0080188 gene silencing by RNA-directed DNA methylation 2.35% (5/213) 5.23 0.0 5e-06
GO:0006346 DNA methylation-dependent heterochromatin formation 2.35% (5/213) 5.23 0.0 5e-06
GO:0031507 heterochromatin formation 2.35% (5/213) 5.06 0.0 6e-06
GO:0045814 negative regulation of gene expression, epigenetic 2.35% (5/213) 5.06 0.0 6e-06
GO:0070828 heterochromatin organization 2.35% (5/213) 5.06 0.0 6e-06
GO:0043227 membrane-bounded organelle 7.04% (15/213) 2.34 0.0 7e-06
GO:0043231 intracellular membrane-bounded organelle 7.04% (15/213) 2.34 0.0 7e-06
GO:0065007 biological regulation 15.49% (33/213) 1.4 0.0 8e-06
GO:2001141 regulation of RNA biosynthetic process 11.27% (24/213) 1.69 1e-06 8e-06
GO:0006355 regulation of DNA-templated transcription 11.27% (24/213) 1.69 1e-06 8e-06
GO:0051252 regulation of RNA metabolic process 11.27% (24/213) 1.68 1e-06 8e-06
GO:0050789 regulation of biological process 15.02% (32/213) 1.39 1e-06 9e-06
GO:0019219 regulation of nucleobase-containing compound metabolic process 11.27% (24/213) 1.67 1e-06 9e-06
GO:0031047 regulatory ncRNA-mediated gene silencing 2.35% (5/213) 4.86 1e-06 1e-05
GO:0040029 epigenetic regulation of gene expression 2.35% (5/213) 4.68 1e-06 1.8e-05
GO:0050794 regulation of cellular process 14.08% (30/213) 1.38 2e-06 1.9e-05
GO:0051171 regulation of nitrogen compound metabolic process 11.27% (24/213) 1.58 2e-06 2.3e-05
GO:0080090 regulation of primary metabolic process 11.27% (24/213) 1.58 2e-06 2.3e-05
GO:0005488 binding 44.13% (94/213) 0.6 2e-06 2.6e-05
GO:0006338 chromatin remodeling 2.35% (5/213) 3.68 4.6e-05 0.0005
GO:0006325 chromatin organization 2.35% (5/213) 3.53 7.7e-05 0.000818
GO:0043565 sequence-specific DNA binding 4.23% (9/213) 2.28 0.000113 0.001167
GO:0010629 negative regulation of gene expression 2.35% (5/213) 3.39 0.000122 0.001231
GO:0071824 protein-DNA complex organization 2.35% (5/213) 3.26 0.000186 0.001822
GO:0043229 intracellular organelle 7.04% (15/213) 1.51 0.000303 0.00283
GO:0043226 organelle 7.04% (15/213) 1.51 0.000303 0.00283
GO:0001067 transcription regulatory region nucleic acid binding 1.88% (4/213) 3.4 0.000571 0.004956
GO:0000976 transcription cis-regulatory region binding 1.88% (4/213) 3.4 0.000571 0.004956
GO:0032502 developmental process 2.82% (6/213) 2.58 0.00055 0.005003
GO:1990837 sequence-specific double-stranded DNA binding 1.88% (4/213) 3.36 0.000638 0.005406
GO:0003682 chromatin binding 1.41% (3/213) 4.12 0.000678 0.005618
GO:0097159 organic cyclic compound binding 25.35% (54/213) 0.6 0.000946 0.007198
GO:0031327 negative regulation of cellular biosynthetic process 2.35% (5/213) 2.75 0.000944 0.007337
GO:0010558 negative regulation of macromolecule biosynthetic process 2.35% (5/213) 2.75 0.000944 0.007337
GO:0009890 negative regulation of biosynthetic process 2.35% (5/213) 2.75 0.000944 0.007337
GO:0051254 positive regulation of RNA metabolic process 1.88% (4/213) 3.15 0.001103 0.007766
GO:0045893 positive regulation of DNA-templated transcription 1.88% (4/213) 3.15 0.001103 0.007766
GO:1902680 positive regulation of RNA biosynthetic process 1.88% (4/213) 3.15 0.001103 0.007766
GO:0048856 anatomical structure development 2.35% (5/213) 2.72 0.001042 0.007776
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 1.88% (4/213) 3.13 0.001155 0.007979
GO:0010557 positive regulation of macromolecule biosynthetic process 1.88% (4/213) 3.08 0.00132 0.008638
GO:0031328 positive regulation of cellular biosynthetic process 1.88% (4/213) 3.08 0.00132 0.008638
GO:0009891 positive regulation of biosynthetic process 1.88% (4/213) 3.08 0.00132 0.008638
GO:0031324 negative regulation of cellular metabolic process 2.35% (5/213) 2.58 0.001604 0.010315
GO:0010605 negative regulation of macromolecule metabolic process 2.35% (5/213) 2.55 0.001749 0.010692
GO:0009892 negative regulation of metabolic process 2.35% (5/213) 2.55 0.001749 0.010692
GO:0005515 protein binding 17.84% (38/213) 0.71 0.0017 0.010747
GO:0031325 positive regulation of cellular metabolic process 1.88% (4/213) 2.94 0.001912 0.011505
GO:0048522 positive regulation of cellular process 1.88% (4/213) 2.86 0.00231 0.013679
GO:0051173 positive regulation of nitrogen compound metabolic process 1.88% (4/213) 2.82 0.002575 0.014775
GO:0010604 positive regulation of macromolecule metabolic process 1.88% (4/213) 2.82 0.002575 0.014775
GO:0003674 molecular_function 55.4% (118/213) 0.28 0.002701 0.015035
GO:0009893 positive regulation of metabolic process 1.88% (4/213) 2.81 0.002667 0.015074
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 1.41% (3/213) 3.4 0.002894 0.015877
GO:0046983 protein dimerization activity 3.76% (8/213) 1.66 0.004246 0.022954
GO:0045944 positive regulation of transcription by RNA polymerase II 1.41% (3/213) 3.17 0.004585 0.024434
GO:0048523 negative regulation of cellular process 2.35% (5/213) 2.16 0.00546 0.028682
GO:0032501 multicellular organismal process 1.41% (3/213) 2.99 0.006501 0.03368
GO:0048519 negative regulation of biological process 2.35% (5/213) 2.07 0.007073 0.036141
GO:0048518 positive regulation of biological process 1.88% (4/213) 2.39 0.007324 0.036917
GO:0003690 double-stranded DNA binding 1.88% (4/213) 2.3 0.009116 0.045336
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (213) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms