Coexpression cluster: Cluster_145 (Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 58.76% (57/97) 1.01 0.0 0.0
GO:0003674 molecular_function 76.29% (74/97) 0.74 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 18.56% (18/97) 2.4 0.0 1e-06
GO:0046483 heterocycle metabolic process 18.56% (18/97) 2.26 0.0 3e-06
GO:0006725 cellular aromatic compound metabolic process 18.56% (18/97) 2.22 0.0 4e-06
GO:1901360 organic cyclic compound metabolic process 18.56% (18/97) 2.19 0.0 5e-06
GO:0005515 protein binding 30.93% (30/97) 1.5 0.0 5e-06
GO:0034641 cellular nitrogen compound metabolic process 18.56% (18/97) 1.98 1e-06 3.1e-05
GO:0016070 RNA metabolic process 12.37% (12/97) 2.59 1e-06 3.5e-05
GO:0090304 nucleic acid metabolic process 13.4% (13/97) 2.27 3e-06 0.000131
GO:0016787 hydrolase activity 20.62% (20/97) 1.58 8e-06 0.000331
GO:0097159 organic cyclic compound binding 35.05% (34/97) 1.06 1e-05 0.000369
GO:0003723 RNA binding 10.31% (10/97) 2.41 2e-05 0.000652
GO:0008270 zinc ion binding 9.28% (9/97) 2.51 3e-05 0.000934
GO:0006807 nitrogen compound metabolic process 27.84% (27/97) 1.15 4.4e-05 0.001268
GO:0043167 ion binding 28.87% (28/97) 1.1 5.2e-05 0.001396
GO:0009451 RNA modification 5.15% (5/97) 3.6 6.1e-05 0.001471
GO:0008237 metallopeptidase activity 4.12% (4/97) 4.25 6.1e-05 0.00154
GO:0016874 ligase activity 5.15% (5/97) 3.54 7.5e-05 0.0017
GO:0006438 valyl-tRNA aminoacylation 2.06% (2/97) 7.04 9.4e-05 0.001938
GO:0004832 valine-tRNA ligase activity 2.06% (2/97) 7.04 9.4e-05 0.001938
GO:0044237 cellular metabolic process 25.77% (25/97) 1.11 0.000133 0.002609
GO:0009987 cellular process 34.02% (33/97) 0.88 0.000193 0.003458
GO:0044238 primary metabolic process 29.9% (29/97) 0.97 0.000192 0.003601
GO:0043168 anion binding 20.62% (20/97) 1.24 0.000236 0.004073
GO:0017111 ribonucleoside triphosphate phosphatase activity 7.22% (7/97) 2.5 0.000249 0.004123
GO:0035639 purine ribonucleoside triphosphate binding 17.53% (17/97) 1.37 0.000276 0.004408
GO:0044281 small molecule metabolic process 9.28% (9/97) 2.06 0.000317 0.004882
GO:0016462 pyrophosphatase activity 7.22% (7/97) 2.42 0.000356 0.00495
GO:1901363 heterocyclic compound binding 20.62% (20/97) 1.2 0.000346 0.004976
GO:0071704 organic substance metabolic process 30.93% (30/97) 0.9 0.000337 0.005002
GO:0008152 metabolic process 31.96% (31/97) 0.86 0.000421 0.005041
GO:0016817 hydrolase activity, acting on acid anhydrides 7.22% (7/97) 2.38 0.000417 0.005141
GO:0036094 small molecule binding 20.62% (20/97) 1.19 0.000383 0.005162
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 2.06% (2/97) 6.04 0.000411 0.005215
GO:0032555 purine ribonucleotide binding 18.56% (18/97) 1.25 0.000451 0.005252
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 7.22% (7/97) 2.38 0.000408 0.005332
GO:0032553 ribonucleotide binding 18.56% (18/97) 1.24 0.000524 0.005944
GO:0097367 carbohydrate derivative binding 18.56% (18/97) 1.22 0.000578 0.006225
GO:0002161 aminoacyl-tRNA editing activity 2.06% (2/97) 5.82 0.000565 0.006248
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.09% (3/97) 4.1 0.000729 0.006982
GO:0043039 tRNA aminoacylation 3.09% (3/97) 4.1 0.000729 0.006982
GO:0043038 amino acid activation 3.09% (3/97) 4.1 0.000729 0.006982
GO:0006418 tRNA aminoacylation for protein translation 3.09% (3/97) 4.1 0.000729 0.006982
GO:0004812 aminoacyl-tRNA ligase activity 3.09% (3/97) 4.1 0.000729 0.006982
GO:0017076 purine nucleotide binding 18.56% (18/97) 1.18 0.0008 0.007497
GO:0006164 purine nucleotide biosynthetic process 3.09% (3/97) 3.94 0.001003 0.009007
GO:0003676 nucleic acid binding 16.49% (16/97) 1.25 0.000982 0.009009
GO:0006520 amino acid metabolic process 5.15% (5/97) 2.67 0.001193 0.010493
GO:0072522 purine-containing compound biosynthetic process 3.09% (3/97) 3.79 0.00138 0.011899
GO:1901265 nucleoside phosphate binding 18.56% (18/97) 1.1 0.001509 0.012506
GO:0000166 nucleotide binding 18.56% (18/97) 1.1 0.001509 0.012506
GO:0090407 organophosphate biosynthetic process 4.12% (4/97) 3.0 0.001615 0.013131
GO:0003824 catalytic activity 37.11% (36/97) 0.67 0.001658 0.013235
GO:0043170 macromolecule metabolic process 21.65% (21/97) 0.96 0.002108 0.016521
GO:0019752 carboxylic acid metabolic process 6.19% (6/97) 2.13 0.002548 0.016642
GO:1901293 nucleoside phosphate biosynthetic process 3.09% (3/97) 3.44 0.002715 0.01672
GO:0009165 nucleotide biosynthetic process 3.09% (3/97) 3.44 0.002715 0.01672
GO:0006082 organic acid metabolic process 6.19% (6/97) 2.12 0.002643 0.016752
GO:0042644 chloroplast nucleoid 1.03% (1/97) 8.63 0.00253 0.016778
GO:0042646 plastid nucleoid 1.03% (1/97) 8.63 0.00253 0.016778
GO:0008962 phosphatidylglycerophosphatase activity 1.03% (1/97) 8.63 0.00253 0.016778
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 1.03% (1/97) 8.63 0.00253 0.016778
GO:0070204 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity 1.03% (1/97) 8.63 0.00253 0.016778
GO:0009295 nucleoid 1.03% (1/97) 8.63 0.00253 0.016778
GO:0009341 beta-galactosidase complex 1.03% (1/97) 8.63 0.00253 0.016778
GO:0140101 catalytic activity, acting on a tRNA 3.09% (3/97) 3.55 0.002187 0.016834
GO:0043436 oxoacid metabolic process 6.19% (6/97) 2.13 0.002619 0.016849
GO:0008150 biological_process 44.33% (43/97) 0.54 0.002886 0.01704
GO:0140640 catalytic activity, acting on a nucleic acid 6.19% (6/97) 2.09 0.002943 0.017139
GO:0005525 GTP binding 4.12% (4/97) 2.77 0.002873 0.017198
GO:0032561 guanyl ribonucleotide binding 4.12% (4/97) 2.77 0.002873 0.017198
GO:0006790 sulfur compound metabolic process 3.09% (3/97) 3.52 0.002313 0.017487
GO:0015276 ligand-gated monoatomic ion channel activity 2.06% (2/97) 4.58 0.003179 0.017567
GO:0022834 ligand-gated channel activity 2.06% (2/97) 4.58 0.003179 0.017567
GO:0016896 RNA exonuclease activity, producing 5'-phosphomonoesters 2.06% (2/97) 4.58 0.003179 0.017567
GO:0004532 RNA exonuclease activity 2.06% (2/97) 4.58 0.003179 0.017567
GO:0140098 catalytic activity, acting on RNA 5.15% (5/97) 2.44 0.002371 0.017618
GO:0019001 guanyl nucleotide binding 4.12% (4/97) 2.73 0.003245 0.017704
GO:0055086 nucleobase-containing small molecule metabolic process 4.12% (4/97) 2.67 0.003701 0.01994
GO:0046914 transition metal ion binding 9.28% (9/97) 1.54 0.003845 0.020461
GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 2.06% (2/97) 4.34 0.004418 0.023221
GO:0015925 galactosidase activity 1.03% (1/97) 7.63 0.005054 0.023939
GO:0004565 beta-galactosidase activity 1.03% (1/97) 7.63 0.005054 0.023939
GO:0003852 2-isopropylmalate synthase activity 1.03% (1/97) 7.63 0.005054 0.023939
GO:0004654 polyribonucleotide nucleotidyltransferase activity 1.03% (1/97) 7.63 0.005054 0.023939
GO:0004642 phosphoribosylformylglycinamidine synthase activity 1.03% (1/97) 7.63 0.005054 0.023939
GO:0009233 menaquinone metabolic process 1.03% (1/97) 7.63 0.005054 0.023939
GO:0009234 menaquinone biosynthetic process 1.03% (1/97) 7.63 0.005054 0.023939
GO:0008233 peptidase activity 6.19% (6/97) 1.95 0.004689 0.02406
GO:0006399 tRNA metabolic process 3.09% (3/97) 3.17 0.004648 0.024135
GO:0018130 heterocycle biosynthetic process 5.15% (5/97) 2.15 0.005496 0.025747
GO:0003937 IMP cyclohydrolase activity 1.03% (1/97) 7.04 0.007572 0.030789
GO:0009098 leucine biosynthetic process 1.03% (1/97) 7.04 0.007572 0.030789
GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity 1.03% (1/97) 7.04 0.007572 0.030789
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 1.03% (1/97) 7.04 0.007572 0.030789
GO:0005672 transcription factor TFIIA complex 1.03% (1/97) 7.04 0.007572 0.030789
GO:0006426 glycyl-tRNA aminoacylation 1.03% (1/97) 7.04 0.007572 0.030789
GO:0044571 [2Fe-2S] cluster assembly 1.03% (1/97) 7.04 0.007572 0.030789
GO:0006551 leucine metabolic process 1.03% (1/97) 7.04 0.007572 0.030789
GO:0004820 glycine-tRNA ligase activity 1.03% (1/97) 7.04 0.007572 0.030789
GO:0031071 cysteine desulfurase activity 1.03% (1/97) 7.04 0.007572 0.030789
GO:1901362 organic cyclic compound biosynthetic process 5.15% (5/97) 2.03 0.00777 0.031296
GO:0005524 ATP binding 13.4% (13/97) 1.11 0.006934 0.031461
GO:0016887 ATP hydrolysis activity 4.12% (4/97) 2.42 0.006801 0.031517
GO:0004222 metalloendopeptidase activity 2.06% (2/97) 4.01 0.006897 0.031625
GO:0016879 ligase activity, forming carbon-nitrogen bonds 2.06% (2/97) 3.98 0.007173 0.032204
GO:0006163 purine nucleotide metabolic process 3.09% (3/97) 2.81 0.009167 0.036585
GO:0032559 adenyl ribonucleotide binding 14.43% (14/97) 1.01 0.009341 0.036937
GO:0009152 purine ribonucleotide biosynthetic process 2.06% (2/97) 3.77 0.009553 0.037431
GO:0072596 establishment of protein localization to chloroplast 1.03% (1/97) 6.63 0.010084 0.038461
GO:0045036 protein targeting to chloroplast 1.03% (1/97) 6.63 0.010084 0.038461
GO:0072598 protein localization to chloroplast 1.03% (1/97) 6.63 0.010084 0.038461
GO:0072521 purine-containing compound metabolic process 3.09% (3/97) 2.73 0.010709 0.040486
GO:0004527 exonuclease activity 2.06% (2/97) 3.67 0.010858 0.040692
GO:0051082 unfolded protein binding 2.06% (2/97) 3.65 0.011195 0.041596
GO:0009260 ribonucleotide biosynthetic process 2.06% (2/97) 3.63 0.011537 0.042141
GO:0046390 ribose phosphate biosynthetic process 2.06% (2/97) 3.63 0.011537 0.042141
GO:0034654 nucleobase-containing compound biosynthetic process 4.12% (4/97) 2.19 0.011715 0.04243
GO:0004534 5'-3' RNA exonuclease activity 1.03% (1/97) 6.3 0.012589 0.044112
GO:0009527 plastid outer membrane 1.03% (1/97) 6.3 0.012589 0.044112
GO:0031969 chloroplast membrane 1.03% (1/97) 6.3 0.012589 0.044112
GO:0009707 chloroplast outer membrane 1.03% (1/97) 6.3 0.012589 0.044112
GO:0003924 GTPase activity 3.09% (3/97) 2.63 0.012924 0.04492
GO:0016788 hydrolase activity, acting on ester bonds 6.19% (6/97) 1.61 0.014114 0.04828
GO:0030554 adenyl nucleotide binding 14.43% (14/97) 0.94 0.014041 0.048413
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (97) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms