Coexpression cluster: Cluster_121 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 20.59% (14/68) 2.13 3e-06 0.000831
GO:0006807 nitrogen compound metabolic process 32.35% (22/68) 1.36 1.7e-05 0.002535
GO:0016836 hydro-lyase activity 4.41% (3/68) 4.89 0.000146 0.008488
GO:0006139 nucleobase-containing compound metabolic process 14.71% (10/68) 2.07 0.000126 0.0092
GO:1901360 organic cyclic compound metabolic process 14.71% (10/68) 1.85 0.00041 0.009931
GO:0044249 cellular biosynthetic process 13.24% (9/68) 1.97 0.00045 0.010082
GO:0071704 organic substance metabolic process 33.82% (23/68) 1.03 0.000392 0.010358
GO:0008152 metabolic process 35.29% (24/68) 1.0 0.000361 0.010505
GO:0009987 cellular process 36.76% (25/68) 0.99 0.00029 0.010558
GO:0003674 molecular_function 66.18% (45/68) 0.53 0.000518 0.010776
GO:0044238 primary metabolic process 33.82% (23/68) 1.15 0.000113 0.010981
GO:0034660 ncRNA metabolic process 5.88% (4/68) 3.38 0.000613 0.011141
GO:0046483 heterocycle metabolic process 14.71% (10/68) 1.93 0.00027 0.011229
GO:0006725 cellular aromatic compound metabolic process 14.71% (10/68) 1.88 0.00035 0.011307
GO:0090304 nucleic acid metabolic process 11.76% (8/68) 2.08 0.000596 0.011559
GO:1901566 organonitrogen compound biosynthetic process 10.29% (7/68) 2.49 0.000245 0.01187
GO:0044237 cellular metabolic process 26.47% (18/68) 1.15 0.000786 0.012031
GO:0005515 protein binding 25.0% (17/68) 1.19 0.000838 0.012193
GO:0044281 small molecule metabolic process 10.29% (7/68) 2.21 0.000781 0.012631
GO:1901576 organic substance biosynthetic process 13.24% (9/68) 1.87 0.000756 0.012939
GO:0043170 macromolecule metabolic process 25.0% (17/68) 1.16 0.001047 0.014514
GO:0016835 carbon-oxygen lyase activity 4.41% (3/68) 3.85 0.001202 0.015896
GO:0009058 biosynthetic process 13.24% (9/68) 1.75 0.00135 0.017079
GO:0004160 dihydroxy-acid dehydratase activity 1.47% (1/68) 9.14 0.001774 0.019119
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity 1.47% (1/68) 9.14 0.001774 0.019119
GO:0006399 tRNA metabolic process 4.41% (3/68) 3.68 0.001698 0.01977
GO:0043648 dicarboxylic acid metabolic process 2.94% (2/68) 5.05 0.001677 0.02033
GO:0034470 ncRNA processing 4.41% (3/68) 3.59 0.002009 0.020875
GO:0006400 tRNA modification 2.94% (2/68) 4.82 0.002315 0.023233
GO:0000226 microtubule cytoskeleton organization 2.94% (2/68) 4.78 0.002431 0.023583
GO:0006412 translation 5.88% (4/68) 2.73 0.003136 0.024014
GO:0006082 organic acid metabolic process 7.35% (5/68) 2.37 0.002825 0.024181
GO:0005488 binding 45.59% (31/68) 0.65 0.00292 0.024281
GO:0009451 RNA modification 4.41% (3/68) 3.38 0.003089 0.024295
GO:0044271 cellular nitrogen compound biosynthetic process 8.82% (6/68) 2.07 0.003017 0.024384
GO:0043436 oxoacid metabolic process 7.35% (5/68) 2.38 0.002803 0.024718
GO:0019752 carboxylic acid metabolic process 7.35% (5/68) 2.38 0.002737 0.024893
GO:0006436 tryptophanyl-tRNA aminoacylation 1.47% (1/68) 8.14 0.003545 0.025159
GO:0004830 tryptophan-tRNA ligase activity 1.47% (1/68) 8.14 0.003545 0.025159
GO:0043043 peptide biosynthetic process 5.88% (4/68) 2.7 0.003408 0.025427
GO:0016070 RNA metabolic process 8.82% (6/68) 2.11 0.002715 0.025484
GO:0006518 peptide metabolic process 5.88% (4/68) 2.62 0.004157 0.028132
GO:0006396 RNA processing 5.88% (4/68) 2.62 0.004157 0.028132
GO:0043604 amide biosynthetic process 5.88% (4/68) 2.6 0.004402 0.029112
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity 1.47% (1/68) 7.55 0.005312 0.031549
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 1.47% (1/68) 7.55 0.005312 0.031549
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 1.47% (1/68) 7.55 0.005312 0.031549
GO:0061731 ribonucleoside-diphosphate reductase activity 1.47% (1/68) 7.55 0.005312 0.031549
GO:0008180 COP9 signalosome 1.47% (1/68) 7.55 0.005312 0.031549
GO:0008033 tRNA processing 2.94% (2/68) 4.16 0.005647 0.032865
GO:0007010 cytoskeleton organization 2.94% (2/68) 3.99 0.00712 0.035118
GO:0043228 non-membrane-bounded organelle 5.88% (4/68) 2.43 0.006554 0.03532
GO:0043232 intracellular non-membrane-bounded organelle 5.88% (4/68) 2.43 0.006554 0.03532
GO:0046394 carboxylic acid biosynthetic process 4.41% (3/68) 2.94 0.007104 0.035643
GO:0016053 organic acid biosynthetic process 4.41% (3/68) 2.94 0.007104 0.035643
GO:0008150 biological_process 45.59% (31/68) 0.58 0.006388 0.035749
GO:0043603 amide metabolic process 5.88% (4/68) 2.45 0.006339 0.036172
GO:0042274 ribosomal small subunit biogenesis 1.47% (1/68) 7.14 0.007077 0.036775
GO:0016151 nickel cation binding 1.47% (1/68) 7.14 0.007077 0.036775
GO:0006996 organelle organization 4.41% (3/68) 2.9 0.007739 0.037534
GO:0071840 cellular component organization or biogenesis 7.35% (5/68) 2.02 0.007917 0.03777
GO:0033588 elongator holoenzyme complex 1.47% (1/68) 6.82 0.008838 0.041484
GO:0070652 HAUS complex 1.47% (1/68) 6.55 0.010597 0.046723
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 1.47% (1/68) 6.55 0.010597 0.046723
GO:0004749 ribose phosphate diphosphokinase activity 1.47% (1/68) 6.55 0.010597 0.046723
GO:0003723 RNA binding 7.35% (5/68) 1.92 0.010368 0.04789
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (68) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms