Coexpression cluster: Cluster_27 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 17.97% (23/128) 1.93 0.0 5e-06
GO:0016070 RNA metabolic process 11.72% (15/128) 2.51 0.0 5e-06
GO:0034660 ncRNA metabolic process 7.03% (9/128) 3.63 0.0 5e-06
GO:0046483 heterocycle metabolic process 16.41% (21/128) 2.09 0.0 5e-06
GO:1901360 organic cyclic compound metabolic process 16.41% (21/128) 2.01 0.0 6e-06
GO:0006139 nucleobase-containing compound metabolic process 14.84% (19/128) 2.08 0.0 7e-06
GO:0016874 ligase activity 6.25% (8/128) 3.82 0.0 8e-06
GO:0090304 nucleic acid metabolic process 14.06% (18/128) 2.34 0.0 9e-06
GO:0006725 cellular aromatic compound metabolic process 15.62% (20/128) 1.97 0.0 1e-05
GO:0006399 tRNA metabolic process 5.47% (7/128) 3.99 0.0 1.6e-05
GO:0140640 catalytic activity, acting on a nucleic acid 9.38% (12/128) 2.69 0.0 1.7e-05
GO:0140098 catalytic activity, acting on RNA 7.81% (10/128) 3.04 0.0 1.8e-05
GO:0042594 response to starvation 2.34% (3/128) 7.23 1e-06 2.3e-05
GO:0016036 cellular response to phosphate starvation 2.34% (3/128) 7.23 1e-06 2.3e-05
GO:0009267 cellular response to starvation 2.34% (3/128) 7.23 1e-06 2.3e-05
GO:0071496 cellular response to external stimulus 2.34% (3/128) 7.0 1e-06 3.2e-05
GO:0031668 cellular response to extracellular stimulus 2.34% (3/128) 7.0 1e-06 3.2e-05
GO:0031669 cellular response to nutrient levels 2.34% (3/128) 7.0 1e-06 3.2e-05
GO:0140101 catalytic activity, acting on a tRNA 4.69% (6/128) 4.15 1e-06 3.6e-05
GO:0043038 amino acid activation 3.91% (5/128) 4.44 4e-06 7.2e-05
GO:0043039 tRNA aminoacylation 3.91% (5/128) 4.44 4e-06 7.2e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.91% (5/128) 4.44 4e-06 7.2e-05
GO:0004812 aminoacyl-tRNA ligase activity 3.91% (5/128) 4.44 4e-06 7.2e-05
GO:0006418 tRNA aminoacylation for protein translation 3.91% (5/128) 4.44 4e-06 7.2e-05
GO:0031667 response to nutrient levels 2.34% (3/128) 6.49 4e-06 7.9e-05
GO:0009991 response to extracellular stimulus 2.34% (3/128) 6.49 4e-06 7.9e-05
GO:0007154 cell communication 2.34% (3/128) 6.11 1e-05 0.000179
GO:0006807 nitrogen compound metabolic process 26.56% (34/128) 1.08 1.5e-05 0.000249
GO:0071704 organic substance metabolic process 30.47% (39/128) 0.88 6.9e-05 0.001128
GO:0044237 cellular metabolic process 24.22% (31/128) 1.02 8.1e-05 0.001282
GO:0006520 amino acid metabolic process 5.47% (7/128) 2.75 8.8e-05 0.001361
GO:0044281 small molecule metabolic process 8.59% (11/128) 1.95 0.000141 0.002104
GO:0043170 macromolecule metabolic process 22.66% (29/128) 1.02 0.00015 0.002169
GO:0006396 RNA processing 5.47% (7/128) 2.51 0.000244 0.003426
GO:0008152 metabolic process 30.47% (39/128) 0.79 0.000254 0.003462
GO:0044238 primary metabolic process 27.34% (35/128) 0.84 0.000312 0.004128
GO:0006082 organic acid metabolic process 6.25% (8/128) 2.14 0.000505 0.006173
GO:0019752 carboxylic acid metabolic process 6.25% (8/128) 2.15 0.000481 0.0062
GO:0043436 oxoacid metabolic process 6.25% (8/128) 2.14 0.000499 0.00626
GO:0003724 RNA helicase activity 2.34% (3/128) 4.08 0.000754 0.008772
GO:0008186 ATP-dependent activity, acting on RNA 2.34% (3/128) 4.08 0.000754 0.008772
GO:0003676 nucleic acid binding 14.84% (19/128) 1.1 0.001302 0.014448
GO:0034470 ncRNA processing 3.12% (4/128) 3.1 0.001281 0.014544
GO:0009987 cellular process 29.69% (38/128) 0.68 0.00138 0.014964
GO:0044271 cellular nitrogen compound biosynthetic process 7.03% (9/128) 1.75 0.001548 0.016404
GO:0140513 nuclear protein-containing complex 3.91% (5/128) 2.49 0.002082 0.021594
GO:1901566 organonitrogen compound biosynthetic process 6.25% (8/128) 1.77 0.002519 0.025561
GO:0030623 U5 snRNA binding 0.78% (1/128) 8.23 0.003339 0.02611
GO:0030681 multimeric ribonuclease P complex 0.78% (1/128) 8.23 0.003339 0.02611
GO:0019388 galactose catabolic process 0.78% (1/128) 8.23 0.003339 0.02611
GO:0033499 galactose catabolic process via UDP-galactose 0.78% (1/128) 8.23 0.003339 0.02611
GO:0006437 tyrosyl-tRNA aminoacylation 0.78% (1/128) 8.23 0.003339 0.02611
GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity 0.78% (1/128) 8.23 0.003339 0.02611
GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity 0.78% (1/128) 8.23 0.003339 0.02611
GO:0017070 U6 snRNA binding 0.78% (1/128) 8.23 0.003339 0.02611
GO:0004638 phosphoribosylaminoimidazole carboxylase activity 0.78% (1/128) 8.23 0.003339 0.02611
GO:0010024 phytochromobilin biosynthetic process 0.78% (1/128) 8.23 0.003339 0.02611
GO:0051202 phytochromobilin metabolic process 0.78% (1/128) 8.23 0.003339 0.02611
GO:0005655 nucleolar ribonuclease P complex 0.78% (1/128) 8.23 0.003339 0.02611
GO:0008237 metallopeptidase activity 2.34% (3/128) 3.44 0.00275 0.027326
GO:0003723 RNA binding 6.25% (8/128) 1.69 0.003611 0.027784
GO:0018130 heterocycle biosynthetic process 4.69% (6/128) 2.02 0.003867 0.029275
GO:0044249 cellular biosynthetic process 8.59% (11/128) 1.35 0.004109 0.030623
GO:0003824 catalytic activity 34.38% (44/128) 0.55 0.003174 0.0309
GO:0015299 obsolete solute:proton antiporter activity 1.56% (2/128) 4.27 0.004828 0.035431
GO:0008479 tRNA-guanosine(34) queuine transglycosylase activity 0.78% (1/128) 7.23 0.006667 0.040772
GO:0006425 glutaminyl-tRNA aminoacylation 0.78% (1/128) 7.23 0.006667 0.040772
GO:0000172 ribonuclease MRP complex 0.78% (1/128) 7.23 0.006667 0.040772
GO:0004819 glutamine-tRNA ligase activity 0.78% (1/128) 7.23 0.006667 0.040772
GO:0022821 solute:potassium antiporter activity 0.78% (1/128) 7.23 0.006667 0.040772
GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor 0.78% (1/128) 7.23 0.006667 0.040772
GO:0050897 cobalt ion binding 0.78% (1/128) 7.23 0.006667 0.040772
GO:0042134 rRNA primary transcript binding 0.78% (1/128) 7.23 0.006667 0.040772
GO:0008531 riboflavin kinase activity 0.78% (1/128) 7.23 0.006667 0.040772
GO:0015386 potassium:proton antiporter activity 0.78% (1/128) 7.23 0.006667 0.040772
GO:1901576 organic substance biosynthetic process 8.59% (11/128) 1.25 0.006971 0.041563
GO:0033554 cellular response to stress 3.12% (4/128) 2.42 0.006887 0.041581
GO:1901362 organic cyclic compound biosynthetic process 4.69% (6/128) 1.9 0.005788 0.041832
GO:0035639 purine ribonucleoside triphosphate binding 13.28% (17/128) 0.97 0.006138 0.0437
GO:0004386 helicase activity 2.34% (3/128) 2.99 0.006518 0.045719
GO:0051716 cellular response to stimulus 3.12% (4/128) 2.36 0.007888 0.046453
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (128) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms