Coexpression cluster: Cluster_525 (Co-expression clusters of Perlo et al 2022 (PRJEB44480))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005634 nucleus 24.27% (25/103) 2.71 0.0 0.0
GO:0043227 membrane-bounded organelle 28.16% (29/103) 1.99 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 28.16% (29/103) 2.01 0.0 0.0
GO:0032301 MutSalpha complex 3.88% (4/103) 8.65 0.0 0.0
GO:0043226 organelle 28.16% (29/103) 1.79 0.0 0.0
GO:0043229 intracellular organelle 28.16% (29/103) 1.79 0.0 0.0
GO:1902679 negative regulation of RNA biosynthetic process 5.83% (6/103) 5.77 0.0 0.0
GO:0045892 negative regulation of DNA-templated transcription 5.83% (6/103) 5.77 0.0 0.0
GO:0051253 negative regulation of RNA metabolic process 5.83% (6/103) 5.57 0.0 0.0
GO:0032300 mismatch repair complex 3.88% (4/103) 7.43 0.0 0.0
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 5.83% (6/103) 5.15 0.0 1e-06
GO:0006312 mitotic recombination 3.88% (4/103) 7.1 0.0 1e-06
GO:0030983 mismatched DNA binding 3.88% (4/103) 6.66 0.0 2e-06
GO:0006298 mismatch repair 3.88% (4/103) 6.21 0.0 6e-06
GO:0000209 protein polyubiquitination 4.85% (5/103) 5.21 0.0 6e-06
GO:0140664 ATP-dependent DNA damage sensor activity 3.88% (4/103) 6.23 0.0 6e-06
GO:0140612 DNA damage sensor activity 3.88% (4/103) 6.23 0.0 6e-06
GO:0051172 negative regulation of nitrogen compound metabolic process 5.83% (6/103) 4.44 0.0 7e-06
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 5.83% (6/103) 4.3 1e-06 1.3e-05
GO:0140299 small molecule sensor activity 3.88% (4/103) 5.83 1e-06 1.4e-05
GO:0010498 proteasomal protein catabolic process 5.83% (6/103) 4.16 1e-06 2e-05
GO:1901565 organonitrogen compound catabolic process 7.77% (8/103) 3.34 2e-06 2.2e-05
GO:0030163 protein catabolic process 5.83% (6/103) 4.04 2e-06 2.9e-05
GO:0110165 cellular anatomical entity 36.89% (38/103) 1.06 3e-06 3.8e-05
GO:0047958 glycine:2-oxoglutarate aminotransferase activity 1.94% (2/103) 9.6 3e-06 3.9e-05
GO:0009853 photorespiration 1.94% (2/103) 9.26 5e-06 6.1e-05
GO:0061630 ubiquitin protein ligase activity 4.85% (5/103) 4.21 9e-06 9.9e-05
GO:0006511 ubiquitin-dependent protein catabolic process 5.83% (6/103) 3.68 9e-06 0.000101
GO:0061659 ubiquitin-like protein ligase activity 4.85% (5/103) 4.15 1.1e-05 0.000117
GO:0019941 modification-dependent protein catabolic process 5.83% (6/103) 3.54 1.5e-05 0.000155
GO:0043632 modification-dependent macromolecule catabolic process 5.83% (6/103) 3.48 1.8e-05 0.000189
GO:0010558 negative regulation of macromolecule biosynthetic process 5.83% (6/103) 3.46 2e-05 0.000199
GO:0005575 cellular_component 37.86% (39/103) 0.92 2.1e-05 0.000206
GO:0009890 negative regulation of biosynthetic process 5.83% (6/103) 3.41 2.4e-05 0.000219
GO:0031327 negative regulation of cellular biosynthetic process 5.83% (6/103) 3.42 2.4e-05 0.00022
GO:0010605 negative regulation of macromolecule metabolic process 5.83% (6/103) 3.29 3.9e-05 0.000344
GO:0031324 negative regulation of cellular metabolic process 5.83% (6/103) 3.26 4.3e-05 0.000366
GO:0009892 negative regulation of metabolic process 5.83% (6/103) 3.26 4.4e-05 0.000367
GO:0051603 proteolysis involved in protein catabolic process 5.83% (6/103) 3.2 5.5e-05 0.000444
GO:0047635 alanine-oxo-acid transaminase activity 1.94% (2/103) 7.36 7.2e-05 0.000555
GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity 1.94% (2/103) 7.36 7.2e-05 0.000555
GO:0008094 ATP-dependent activity, acting on DNA 4.85% (5/103) 3.56 7.5e-05 0.000562
GO:0045037 protein import into chloroplast stroma 1.94% (2/103) 6.96 0.000126 0.000887
GO:0016034 maleylacetoacetate isomerase activity 1.94% (2/103) 6.97 0.000123 0.000888
GO:0008453 alanine-glyoxylate transaminase activity 1.94% (2/103) 6.99 0.000121 0.000889
GO:0004842 ubiquitin-protein transferase activity 4.85% (5/103) 3.36 0.000142 0.000978
GO:2001141 regulation of RNA biosynthetic process 9.71% (10/103) 2.06 0.000157 0.00104
GO:0006355 regulation of DNA-templated transcription 9.71% (10/103) 2.06 0.000157 0.00104
GO:0019787 ubiquitin-like protein transferase activity 4.85% (5/103) 3.31 0.000167 0.00108
GO:0009528 plastid inner membrane 1.94% (2/103) 6.69 0.000182 0.001088
GO:0009706 chloroplast inner membrane 1.94% (2/103) 6.69 0.000182 0.001088
GO:0016755 aminoacyltransferase activity 4.85% (5/103) 3.27 0.000186 0.00109
GO:0006807 nitrogen compound metabolic process 25.24% (26/103) 1.06 0.000181 0.001124
GO:0048519 negative regulation of biological process 5.83% (6/103) 2.86 0.000197 0.001133
GO:0048523 negative regulation of cellular process 5.83% (6/103) 2.88 0.000179 0.001133
GO:0009658 chloroplast organization 2.91% (3/103) 4.71 0.000226 0.001277
GO:0051252 regulation of RNA metabolic process 9.71% (10/103) 1.98 0.000235 0.001305
GO:0043170 macromolecule metabolic process 23.3% (24/103) 1.1 0.000244 0.001331
GO:0006559 L-phenylalanine catabolic process 1.94% (2/103) 6.43 0.000259 0.00137
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process 1.94% (2/103) 6.43 0.000259 0.00137
GO:0009657 plastid organization 2.91% (3/103) 4.62 0.000269 0.001399
GO:0019219 regulation of nucleobase-containing compound metabolic process 9.71% (10/103) 1.93 0.00032 0.001637
GO:0009057 macromolecule catabolic process 5.83% (6/103) 2.69 0.000368 0.001853
GO:0006558 L-phenylalanine metabolic process 1.94% (2/103) 6.1 0.00041 0.002
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process 1.94% (2/103) 6.1 0.00041 0.002
GO:1901575 organic substance catabolic process 7.77% (8/103) 2.17 0.000435 0.002088
GO:0006310 DNA recombination 3.88% (4/103) 3.51 0.000452 0.00214
GO:0009056 catabolic process 7.77% (8/103) 2.1 0.000602 0.002805
GO:0072596 establishment of protein localization to chloroplast 1.94% (2/103) 5.79 0.00063 0.002893
GO:0140096 catalytic activity, acting on a protein 14.56% (15/103) 1.37 0.000673 0.003048
GO:0016567 protein ubiquitination 4.85% (5/103) 2.85 0.000693 0.00305
GO:0006508 proteolysis 6.8% (7/103) 2.26 0.000691 0.003087
GO:0004032 alditol:NADP+ 1-oxidoreductase activity 1.94% (2/103) 5.64 0.000773 0.003356
GO:0051171 regulation of nitrogen compound metabolic process 9.71% (10/103) 1.75 0.000836 0.003582
GO:0008106 alcohol dehydrogenase (NADP+) activity 1.94% (2/103) 5.56 0.00086 0.003587
GO:0072598 protein localization to chloroplast 1.94% (2/103) 5.56 0.00086 0.003587
GO:0032446 protein modification by small protein conjugation 4.85% (5/103) 2.78 0.000881 0.003626
GO:0080090 regulation of primary metabolic process 9.71% (10/103) 1.73 0.000898 0.003649
GO:0016740 transferase activity 17.48% (18/103) 1.17 0.000921 0.003696
GO:0003690 double-stranded DNA binding 4.85% (5/103) 2.72 0.00103 0.004083
GO:0044238 primary metabolic process 26.21% (27/103) 0.87 0.00119 0.004657
GO:0043094 cellular metabolic compound salvage 1.94% (2/103) 5.3 0.001237 0.004783
GO:0010468 regulation of gene expression 9.71% (10/103) 1.65 0.00135 0.004975
GO:0006281 DNA repair 4.85% (5/103) 2.64 0.001342 0.005006
GO:0008152 metabolic process 28.16% (29/103) 0.81 0.001338 0.005049
GO:0140097 catalytic activity, acting on DNA 4.85% (5/103) 2.64 0.001333 0.005093
GO:0010556 regulation of macromolecule biosynthetic process 9.71% (10/103) 1.64 0.001419 0.00517
GO:0005488 binding 35.92% (37/103) 0.67 0.001442 0.005195
GO:0009889 regulation of biosynthetic process 9.71% (10/103) 1.62 0.001625 0.005724
GO:0033554 cellular response to stress 5.83% (6/103) 2.27 0.001648 0.005743
GO:0031326 regulation of cellular biosynthetic process 9.71% (10/103) 1.62 0.001616 0.005757
GO:0005524 ATP binding 12.62% (13/103) 1.36 0.001696 0.005843
GO:0046983 protein dimerization activity 3.88% (4/103) 2.98 0.001753 0.005975
GO:0009074 aromatic amino acid family catabolic process 1.94% (2/103) 5.03 0.001777 0.005992
GO:0036211 protein modification process 12.62% (13/103) 1.35 0.001806 0.006026
GO:0004674 protein serine/threonine kinase activity 5.83% (6/103) 2.23 0.001857 0.00613
GO:0051716 cellular response to stimulus 5.83% (6/103) 2.23 0.001907 0.006231
GO:0043412 macromolecule modification 13.59% (14/103) 1.27 0.001953 0.006317
GO:0006974 DNA damage response 4.85% (5/103) 2.5 0.002004 0.006415
GO:0010992 ubiquitin recycling 0.97% (1/103) 8.81 0.002226 0.006918
GO:0031055 chromatin remodeling at centromere 0.97% (1/103) 8.81 0.002226 0.006918
GO:0034080 CENP-A containing chromatin assembly 0.97% (1/103) 8.81 0.002226 0.006918
GO:0004033 aldo-keto reductase (NADP) activity 1.94% (2/103) 4.82 0.002364 0.007276
GO:0070647 protein modification by small protein conjugation or removal 4.85% (5/103) 2.44 0.002401 0.007318
GO:0005654 nucleoplasm 1.94% (2/103) 4.76 0.00257 0.007758
GO:0019538 protein metabolic process 14.56% (15/103) 1.17 0.00269 0.008044
GO:0060255 regulation of macromolecule metabolic process 9.71% (10/103) 1.51 0.002744 0.00813
GO:0031323 regulation of cellular metabolic process 9.71% (10/103) 1.5 0.002865 0.008409
GO:0071704 organic substance metabolic process 26.21% (27/103) 0.78 0.002893 0.008413
GO:0035639 purine ribonucleoside triphosphate binding 12.62% (13/103) 1.25 0.003123 0.008919
GO:0008150 biological_process 40.78% (42/103) 0.55 0.003103 0.008942
GO:0003677 DNA binding 8.74% (9/103) 1.57 0.003476 0.009839
GO:0019222 regulation of metabolic process 9.71% (10/103) 1.46 0.003582 0.010049
GO:0031969 chloroplast membrane 1.94% (2/103) 4.5 0.003636 0.010111
GO:0044237 cellular metabolic process 21.36% (22/103) 0.87 0.003755 0.010352
GO:0071806 protein transmembrane transport 1.94% (2/103) 4.34 0.004519 0.012349
GO:0016769 transferase activity, transferring nitrogenous groups 1.94% (2/103) 4.29 0.004828 0.01286
GO:0008483 transaminase activity 1.94% (2/103) 4.29 0.004828 0.01286
GO:1901564 organonitrogen compound metabolic process 16.5% (17/103) 0.99 0.004758 0.01289
GO:0019866 organelle inner membrane 1.94% (2/103) 4.23 0.005211 0.013765
GO:0043687 post-translational protein modification 4.85% (5/103) 2.14 0.005754 0.015074
GO:0006335 DNA replication-dependent chromatin assembly 0.97% (1/103) 7.42 0.005811 0.0151
GO:0016859 cis-trans isomerase activity 1.94% (2/103) 4.01 0.007025 0.018106
GO:0018773 acetylpyruvate hydrolase activity 0.97% (1/103) 7.12 0.007174 0.018193
GO:0003674 molecular_function 47.57% (49/103) 0.43 0.007133 0.018236
GO:1901606 alpha-amino acid catabolic process 1.94% (2/103) 3.91 0.008045 0.019923
GO:0003824 catalytic activity 28.16% (29/103) 0.64 0.008035 0.020055
GO:0009072 aromatic amino acid metabolic process 1.94% (2/103) 3.91 0.008025 0.02019
GO:0046510 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity 0.97% (1/103) 6.9 0.008365 0.020555
GO:0043167 ion binding 18.45% (19/103) 0.84 0.008606 0.020824
GO:0016746 acyltransferase activity 4.85% (5/103) 2.0 0.008549 0.020846
GO:0043168 anion binding 14.56% (15/103) 0.98 0.00884 0.02123
GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds 0.97% (1/103) 6.78 0.009044 0.021396
GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 0.97% (1/103) 6.78 0.009044 0.021396
GO:0140657 ATP-dependent activity 5.83% (6/103) 1.75 0.009346 0.021469
GO:0009063 amino acid catabolic process 1.94% (2/103) 3.81 0.009169 0.021529
GO:0030170 pyridoxal phosphate binding 1.94% (2/103) 3.8 0.009316 0.021557
GO:0070279 vitamin B6 binding 1.94% (2/103) 3.8 0.009316 0.021557
GO:1901363 heterocyclic compound binding 14.56% (15/103) 0.96 0.00961 0.021605
GO:0046506 sulfolipid biosynthetic process 0.97% (1/103) 6.7 0.009554 0.021632
GO:0046505 sulfolipid metabolic process 0.97% (1/103) 6.7 0.009554 0.021632
GO:0004364 glutathione transferase activity 1.94% (2/103) 3.77 0.009723 0.021705
GO:0036094 small molecule binding 14.56% (15/103) 0.95 0.010181 0.02257
GO:0009535 chloroplast thylakoid membrane 1.94% (2/103) 3.65 0.011334 0.024778
GO:0055035 plastid thylakoid membrane 1.94% (2/103) 3.65 0.011334 0.024778
GO:0006749 glutathione metabolic process 1.94% (2/103) 3.52 0.01335 0.028026
GO:0008237 metallopeptidase activity 1.94% (2/103) 3.53 0.013275 0.028055
GO:0042651 thylakoid membrane 1.94% (2/103) 3.53 0.013275 0.028055
GO:0034357 photosynthetic membrane 1.94% (2/103) 3.53 0.013275 0.028055
GO:0017053 transcription repressor complex 0.97% (1/103) 6.24 0.013113 0.028472
GO:0032559 adenyl ribonucleotide binding 12.62% (13/103) 1.0 0.013215 0.028497
GO:0006468 protein phosphorylation 7.77% (8/103) 1.34 0.014228 0.02948
GO:0019842 vitamin binding 1.94% (2/103) 3.48 0.014182 0.029576
GO:0005886 plasma membrane 5.83% (6/103) 1.57 0.016439 0.033839
GO:0016310 phosphorylation 7.77% (8/103) 1.3 0.01678 0.034317
GO:0006725 cellular aromatic compound metabolic process 10.68% (11/103) 1.05 0.017225 0.034778
GO:0004672 protein kinase activity 7.77% (8/103) 1.29 0.017191 0.034933
GO:0030554 adenyl nucleotide binding 12.62% (13/103) 0.94 0.017693 0.035499
GO:0140640 catalytic activity, acting on a nucleic acid 5.83% (6/103) 1.53 0.018295 0.036476
GO:0032555 purine ribonucleotide binding 12.62% (13/103) 0.92 0.019994 0.039613
GO:1901360 organic cyclic compound metabolic process 10.68% (11/103) 1.01 0.020837 0.041028
GO:0032553 ribonucleotide binding 12.62% (13/103) 0.9 0.021224 0.041531
GO:0090304 nucleic acid metabolic process 8.74% (9/103) 1.13 0.022449 0.043392
GO:0097367 carbohydrate derivative binding 12.62% (13/103) 0.89 0.022419 0.0436
GO:0042170 plastid membrane 1.94% (2/103) 3.04 0.025106 0.048235
GO:0006259 DNA metabolic process 4.85% (5/103) 1.59 0.025792 0.049253
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (103) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms