Coexpression cluster: Cluster_133 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 31.58% (18/57) 2.19 0.0 8e-06
GO:0005575 cellular_component 31.58% (18/57) 1.77 2e-06 0.000204
GO:0034641 cellular nitrogen compound metabolic process 22.81% (13/57) 2.27 2e-06 0.000267
GO:0034660 ncRNA metabolic process 8.77% (5/57) 3.95 1.8e-05 0.00128
GO:0090304 nucleic acid metabolic process 15.79% (9/57) 2.5 2.6e-05 0.001483
GO:0032991 protein-containing complex 15.79% (9/57) 2.39 4.7e-05 0.00221
GO:0034470 ncRNA processing 7.02% (4/57) 4.26 5.8e-05 0.002317
GO:0043229 intracellular organelle 14.04% (8/57) 2.5 7.8e-05 0.002425
GO:0043226 organelle 14.04% (8/57) 2.5 7.8e-05 0.002425
GO:0005741 mitochondrial outer membrane 3.51% (2/57) 7.07 9.7e-05 0.002716
GO:0140640 catalytic activity, acting on a nucleic acid 10.53% (6/57) 2.86 0.000176 0.003279
GO:0005488 binding 52.63% (30/57) 0.85 0.000167 0.00334
GO:0016070 RNA metabolic process 12.28% (7/57) 2.58 0.000161 0.003467
GO:0006396 RNA processing 8.77% (5/57) 3.2 0.000218 0.003587
GO:1990904 ribonucleoprotein complex 7.02% (4/57) 3.93 0.000143 0.003649
GO:0006139 nucleobase-containing compound metabolic process 15.79% (9/57) 2.17 0.000157 0.003653
GO:0140098 catalytic activity, acting on RNA 8.77% (5/57) 3.21 0.00021 0.00367
GO:0006725 cellular aromatic compound metabolic process 15.79% (9/57) 1.99 0.000399 0.004296
GO:0005852 eukaryotic translation initiation factor 3 complex 3.51% (2/57) 6.22 0.000327 0.004364
GO:0046483 heterocycle metabolic process 15.79% (9/57) 2.03 0.000315 0.004403
GO:0043228 non-membrane-bounded organelle 8.77% (5/57) 3.01 0.000395 0.00443
GO:0043232 intracellular non-membrane-bounded organelle 8.77% (5/57) 3.01 0.000395 0.00443
GO:0008135 translation factor activity, RNA binding 5.26% (3/57) 4.54 0.000302 0.004456
GO:0090079 translation regulator activity, nucleic acid binding 5.26% (3/57) 4.54 0.000302 0.004456
GO:1901360 organic cyclic compound metabolic process 15.79% (9/57) 1.96 0.000461 0.004456
GO:0009059 macromolecule biosynthetic process 10.53% (6/57) 2.62 0.000432 0.004475
GO:0032040 small-subunit processome 3.51% (2/57) 6.0 0.000448 0.00448
GO:0045182 translation regulator activity 5.26% (3/57) 4.44 0.000368 0.004681
GO:0110165 cellular anatomical entity 21.05% (12/57) 1.63 0.000389 0.004734
GO:0030684 preribosome 3.51% (2/57) 5.87 0.000539 0.005027
GO:0031968 organelle outer membrane 3.51% (2/57) 5.64 0.000744 0.006724
GO:0003723 RNA binding 10.53% (6/57) 2.44 0.00082 0.007173
GO:0006399 tRNA metabolic process 5.26% (3/57) 3.93 0.001019 0.008649
GO:0031966 mitochondrial membrane 3.51% (2/57) 5.31 0.001182 0.009455
GO:0043170 macromolecule metabolic process 26.32% (15/57) 1.24 0.001154 0.009508
GO:0005840 ribosome 7.02% (4/57) 3.09 0.001254 0.009755
GO:0019867 outer membrane 3.51% (2/57) 5.22 0.001325 0.010025
GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex 1.75% (1/57) 9.39 0.001487 0.010956
GO:0006412 translation 7.02% (4/57) 2.99 0.001641 0.011781
GO:0097159 organic cyclic compound binding 33.33% (19/57) 0.99 0.001739 0.011877
GO:0043043 peptide biosynthetic process 7.02% (4/57) 2.95 0.001786 0.01191
GO:0003735 structural constituent of ribosome 7.02% (4/57) 2.97 0.001731 0.012116
GO:0098588 bounding membrane of organelle 3.51% (2/57) 4.97 0.001886 0.012282
GO:0044237 cellular metabolic process 26.32% (15/57) 1.14 0.002221 0.013818
GO:0006518 peptide metabolic process 7.02% (4/57) 2.87 0.002189 0.013929
GO:0015934 large ribosomal subunit 3.51% (2/57) 4.81 0.002345 0.01397
GO:0043604 amide biosynthetic process 7.02% (4/57) 2.85 0.002321 0.014127
GO:0003743 translation initiation factor activity 3.51% (2/57) 4.78 0.002442 0.014248
GO:0004822 isoleucine-tRNA ligase activity 1.75% (1/57) 8.39 0.002972 0.014346
GO:0006428 isoleucyl-tRNA aminoacylation 1.75% (1/57) 8.39 0.002972 0.014346
GO:0042023 DNA endoreduplication 1.75% (1/57) 8.39 0.002972 0.014346
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.75% (1/57) 8.39 0.002972 0.014346
GO:0044786 cell cycle DNA replication 1.75% (1/57) 8.39 0.002972 0.014346
GO:0003674 molecular_function 64.91% (37/57) 0.51 0.002664 0.01522
GO:0005198 structural molecule activity 7.02% (4/57) 2.76 0.002904 0.015342
GO:0008186 ATP-dependent activity, acting on RNA 3.51% (2/57) 4.67 0.002851 0.015352
GO:0003724 RNA helicase activity 3.51% (2/57) 4.67 0.002851 0.015352
GO:0005515 protein binding 24.56% (14/57) 1.17 0.002787 0.015607
GO:0043603 amide metabolic process 7.02% (4/57) 2.7 0.003373 0.016008
GO:0008033 tRNA processing 3.51% (2/57) 4.42 0.004002 0.018678
GO:0030490 maturation of SSU-rRNA 1.75% (1/57) 7.81 0.004454 0.020116
GO:0004809 obsolete tRNA (guanine-N2-)-methyltransferase activity 1.75% (1/57) 7.81 0.004454 0.020116
GO:0006364 rRNA processing 3.51% (2/57) 4.2 0.005335 0.02334
GO:0009987 cellular process 33.33% (19/57) 0.85 0.005315 0.023622
GO:0000315 organellar large ribosomal subunit 1.75% (1/57) 7.39 0.005935 0.023739
GO:0005762 mitochondrial large ribosomal subunit 1.75% (1/57) 7.39 0.005935 0.023739
GO:0016423 tRNA (guanine) methyltransferase activity 1.75% (1/57) 7.39 0.005935 0.023739
GO:0008097 5S rRNA binding 1.75% (1/57) 7.39 0.005935 0.023739
GO:0044391 ribosomal subunit 3.51% (2/57) 4.15 0.005769 0.024475
GO:0140657 ATP-dependent activity 7.02% (4/57) 2.48 0.005724 0.024656
GO:0016072 rRNA metabolic process 3.51% (2/57) 4.04 0.006684 0.026361
GO:0044271 cellular nitrogen compound biosynthetic process 8.77% (5/57) 2.07 0.006796 0.026428
GO:0022884 macromolecule transmembrane transporter activity 1.75% (1/57) 7.07 0.007413 0.027311
GO:0008320 protein transmembrane transporter activity 1.75% (1/57) 7.07 0.007413 0.027311
GO:0000027 ribosomal large subunit assembly 1.75% (1/57) 7.07 0.007413 0.027311
GO:0140318 protein transporter activity 1.75% (1/57) 7.07 0.007413 0.027311
GO:0000178 exosome (RNase complex) 1.75% (1/57) 6.81 0.008889 0.032324
GO:0031090 organelle membrane 3.51% (2/57) 3.79 0.009239 0.033165
GO:0006807 nitrogen compound metabolic process 24.56% (14/57) 0.97 0.009626 0.034118
GO:0140101 catalytic activity, acting on a tRNA 3.51% (2/57) 3.74 0.009983 0.03494
GO:0098656 monoatomic anion transmembrane transport 1.75% (1/57) 6.59 0.010363 0.034959
GO:1905354 exoribonuclease complex 1.75% (1/57) 6.59 0.010363 0.034959
GO:0030150 protein import into mitochondrial matrix 1.75% (1/57) 6.59 0.010363 0.034959
GO:0008175 tRNA methyltransferase activity 1.75% (1/57) 6.39 0.011835 0.038532
GO:0009960 endosperm development 1.75% (1/57) 6.39 0.011835 0.038532
GO:0008134 transcription factor binding 1.75% (1/57) 6.39 0.011835 0.038532
GO:0044249 cellular biosynthetic process 10.53% (6/57) 1.64 0.012172 0.039173
GO:0004386 helicase activity 3.51% (2/57) 3.57 0.012368 0.039352
GO:1990542 mitochondrial transmembrane transport 1.75% (1/57) 6.22 0.013304 0.041857
GO:0030488 tRNA methylation 1.75% (1/57) 6.07 0.014772 0.045452
GO:0044743 protein transmembrane import into intracellular organelle 1.75% (1/57) 6.07 0.014772 0.045452
GO:0005669 transcription factor TFIID complex 1.75% (1/57) 5.93 0.016237 0.049418
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (57) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms