Coexpression cluster: Cluster_48 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016072 rRNA metabolic process 14.58% (7/48) 6.09 0.0 0.0
GO:0034660 ncRNA metabolic process 18.75% (9/48) 5.05 0.0 0.0
GO:0034470 ncRNA processing 14.58% (7/48) 5.32 0.0 0.0
GO:0006364 rRNA processing 12.5% (6/48) 6.04 0.0 0.0
GO:0006396 RNA processing 16.67% (8/48) 4.12 0.0 1e-06
GO:0016070 RNA metabolic process 20.83% (10/48) 3.34 0.0 1e-06
GO:0090304 nucleic acid metabolic process 22.92% (11/48) 3.04 0.0 2e-06
GO:0006139 nucleobase-containing compound metabolic process 22.92% (11/48) 2.71 1e-06 1.5e-05
GO:0034641 cellular nitrogen compound metabolic process 25.0% (12/48) 2.41 2e-06 3e-05
GO:0046483 heterocycle metabolic process 22.92% (11/48) 2.57 2e-06 3.3e-05
GO:0006725 cellular aromatic compound metabolic process 22.92% (11/48) 2.52 2e-06 3.7e-05
GO:1901360 organic cyclic compound metabolic process 22.92% (11/48) 2.49 3e-06 3.8e-05
GO:0097159 organic cyclic compound binding 45.83% (22/48) 1.45 3e-06 3.9e-05
GO:0006879 intracellular iron ion homeostasis 4.17% (2/48) 9.06 5e-06 5.9e-05
GO:0008199 ferric iron binding 4.17% (2/48) 8.64 9e-06 0.000111
GO:0035639 purine ribonucleoside triphosphate binding 27.08% (13/48) 1.99 1.3e-05 0.000148
GO:0006457 protein folding 8.33% (4/48) 4.69 1.8e-05 0.000194
GO:0016887 ATP hydrolysis activity 10.42% (5/48) 3.76 3.4e-05 0.000343
GO:0006826 iron ion transport 4.17% (2/48) 7.47 5.5e-05 0.000452
GO:0032555 purine ribonucleotide binding 27.08% (13/48) 1.8 5.4e-05 0.000462
GO:0043227 membrane-bounded organelle 12.5% (6/48) 3.17 5.3e-05 0.000475
GO:0043231 intracellular membrane-bounded organelle 12.5% (6/48) 3.17 5.3e-05 0.000475
GO:0032553 ribonucleotide binding 27.08% (13/48) 1.78 6.1e-05 0.00048
GO:0097367 carbohydrate derivative binding 27.08% (13/48) 1.77 6.6e-05 0.000481
GO:0051082 unfolded protein binding 6.25% (3/48) 5.25 6.9e-05 0.000483
GO:0140640 catalytic activity, acting on a nucleic acid 12.5% (6/48) 3.11 6.6e-05 0.0005
GO:0017076 purine nucleotide binding 27.08% (13/48) 1.73 8.8e-05 0.000593
GO:0005634 nucleus 10.42% (5/48) 3.33 0.000138 0.000861
GO:0005524 ATP binding 22.92% (11/48) 1.88 0.000137 0.000884
GO:0000166 nucleotide binding 27.08% (13/48) 1.65 0.000155 0.000906
GO:1901265 nucleoside phosphate binding 27.08% (13/48) 1.65 0.000155 0.000906
GO:0043168 anion binding 27.08% (13/48) 1.63 0.000174 0.000926
GO:0043226 organelle 14.58% (7/48) 2.56 0.000171 0.000935
GO:0043229 intracellular organelle 14.58% (7/48) 2.56 0.000171 0.000935
GO:1901363 heterocyclic compound binding 27.08% (13/48) 1.59 0.000233 0.001203
GO:0036094 small molecule binding 27.08% (13/48) 1.58 0.000251 0.001229
GO:0005488 binding 54.17% (26/48) 0.89 0.000245 0.001232
GO:1901681 sulfur compound binding 4.17% (2/48) 6.25 0.000318 0.001513
GO:0017111 ribonucleoside triphosphate phosphatase activity 10.42% (5/48) 3.03 0.000357 0.00154
GO:0003676 nucleic acid binding 22.92% (11/48) 1.73 0.000352 0.001554
GO:0042254 ribosome biogenesis 4.17% (2/48) 6.18 0.000349 0.001579
GO:0030003 intracellular monoatomic cation homeostasis 4.17% (2/48) 6.18 0.000349 0.001579
GO:0016462 pyrophosphatase activity 10.42% (5/48) 2.95 0.000469 0.001973
GO:0032559 adenyl ribonucleotide binding 22.92% (11/48) 1.67 0.000483 0.001985
GO:0016817 hydrolase activity, acting on acid anhydrides 10.42% (5/48) 2.91 0.000529 0.002037
GO:0009987 cellular process 39.58% (19/48) 1.1 0.000521 0.002049
GO:0022613 ribonucleoprotein complex biogenesis 4.17% (2/48) 5.83 0.000568 0.002058
GO:0000041 transition metal ion transport 4.17% (2/48) 5.83 0.000568 0.002058
GO:0098771 inorganic ion homeostasis 4.17% (2/48) 5.83 0.000568 0.002058
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.42% (5/48) 2.91 0.00052 0.002092
GO:0006873 intracellular monoatomic ion homeostasis 4.17% (2/48) 5.73 0.000653 0.002318
GO:0030554 adenyl nucleotide binding 22.92% (11/48) 1.6 0.000734 0.002557
GO:0055080 monoatomic cation homeostasis 4.17% (2/48) 5.6 0.000791 0.002701
GO:0001510 RNA methylation 4.17% (2/48) 5.55 0.00084 0.002814
GO:0055082 intracellular chemical homeostasis 4.17% (2/48) 5.47 0.000941 0.003098
GO:0043167 ion binding 31.25% (15/48) 1.22 0.001123 0.003567
GO:0140098 catalytic activity, acting on RNA 8.33% (4/48) 3.13 0.001119 0.003617
GO:0050801 monoatomic ion homeostasis 4.17% (2/48) 5.28 0.00122 0.003808
GO:1990904 ribonucleoprotein complex 6.25% (3/48) 3.76 0.001437 0.004408
GO:0019725 cellular homeostasis 4.17% (2/48) 5.15 0.001469 0.00443
GO:0048878 chemical homeostasis 4.17% (2/48) 5.09 0.001601 0.004751
GO:0003743 translation initiation factor activity 4.17% (2/48) 5.03 0.001739 0.005077
GO:0042592 homeostatic process 4.17% (2/48) 4.83 0.002265 0.006506
GO:0006420 arginyl-tRNA aminoacylation 2.08% (1/48) 8.64 0.002503 0.006864
GO:0034457 Mpp10 complex 2.08% (1/48) 8.64 0.002503 0.006864
GO:0004814 arginine-tRNA ligase activity 2.08% (1/48) 8.64 0.002503 0.006864
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 4.17% (2/48) 4.69 0.002767 0.007476
GO:0043038 amino acid activation 4.17% (2/48) 4.53 0.003414 0.008583
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.17% (2/48) 4.53 0.003414 0.008583
GO:0006418 tRNA aminoacylation for protein translation 4.17% (2/48) 4.53 0.003414 0.008583
GO:0043039 tRNA aminoacylation 4.17% (2/48) 4.53 0.003414 0.008583
GO:0004812 aminoacyl-tRNA ligase activity 4.17% (2/48) 4.53 0.003414 0.008583
GO:0004831 tyrosine-tRNA ligase activity 2.08% (1/48) 8.06 0.003752 0.009303
GO:0044391 ribosomal subunit 4.17% (2/48) 4.39 0.004125 0.010089
GO:0043414 macromolecule methylation 4.17% (2/48) 4.32 0.004559 0.011002
GO:0110165 cellular anatomical entity 18.75% (9/48) 1.46 0.004649 0.011071
GO:0044085 cellular component biogenesis 4.17% (2/48) 4.25 0.005013 0.011784
GO:0090079 translation regulator activity, nucleic acid binding 4.17% (2/48) 4.2 0.005367 0.012296
GO:0008135 translation factor activity, RNA binding 4.17% (2/48) 4.2 0.005367 0.012296
GO:0043170 macromolecule metabolic process 25.0% (12/48) 1.16 0.005473 0.012383
GO:0045182 translation regulator activity 4.17% (2/48) 4.1 0.006108 0.013649
GO:0032259 methylation 4.17% (2/48) 4.06 0.006495 0.014337
GO:0140101 catalytic activity, acting on a tRNA 4.17% (2/48) 3.98 0.007165 0.015624
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.08% (1/48) 7.06 0.00749 0.016139
GO:0044237 cellular metabolic process 25.0% (12/48) 1.07 0.009129 0.019439
GO:0000470 maturation of LSU-rRNA 2.08% (1/48) 6.64 0.009974 0.020993
GO:0005575 cellular_component 20.83% (10/48) 1.17 0.011366 0.023647
GO:0006399 tRNA metabolic process 4.17% (2/48) 3.6 0.011969 0.024618
GO:0003723 RNA binding 8.33% (4/48) 2.1 0.013946 0.027739
GO:0006807 nitrogen compound metabolic process 25.0% (12/48) 0.99 0.013804 0.027761
GO:0031167 rRNA methylation 2.08% (1/48) 6.18 0.01369 0.027841
GO:0030001 metal ion transport 4.17% (2/48) 3.42 0.015059 0.029628
GO:0140097 catalytic activity, acting on DNA 4.17% (2/48) 3.37 0.016224 0.03124
GO:0006261 DNA-templated DNA replication 2.08% (1/48) 5.94 0.016159 0.031449
GO:0009451 RNA modification 4.17% (2/48) 3.29 0.017834 0.033979
GO:0000154 rRNA modification 2.08% (1/48) 5.73 0.018622 0.034748
GO:0008649 rRNA methyltransferase activity 2.08% (1/48) 5.73 0.018622 0.034748
GO:0016874 ligase activity 4.17% (2/48) 3.23 0.019297 0.035641
GO:0022625 cytosolic large ribosomal subunit 2.08% (1/48) 5.64 0.019851 0.036294
GO:0007005 mitochondrion organization 2.08% (1/48) 5.55 0.021079 0.038153
GO:0005852 eukaryotic translation initiation factor 3 complex 2.08% (1/48) 5.47 0.022305 0.039973
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 2.08% (1/48) 5.39 0.02353 0.041754
GO:0003887 DNA-directed DNA polymerase activity 2.08% (1/48) 5.25 0.025975 0.045646
GO:0034061 DNA polymerase activity 2.08% (1/48) 5.18 0.027196 0.047331
GO:0005737 cytoplasm 4.17% (2/48) 2.95 0.027571 0.047528
GO:0003674 molecular_function 60.42% (29/48) 0.4 0.028431 0.048094
GO:0005739 mitochondrion 2.08% (1/48) 5.12 0.028414 0.048519
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (48) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms