Coexpression cluster: Cluster_59 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016817 hydrolase activity, acting on acid anhydrides 11.11% (8/72) 3.0 7e-06 0.000434
GO:0006457 protein folding 6.94% (5/72) 4.42 4e-06 0.000465
GO:0009408 response to heat 4.17% (3/72) 6.18 1e-05 0.000494
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 11.11% (8/72) 3.01 7e-06 0.000507
GO:0016887 ATP hydrolysis activity 9.72% (7/72) 3.66 1e-06 0.000519
GO:0016462 pyrophosphatase activity 11.11% (8/72) 3.04 6e-06 0.000536
GO:0017111 ribonucleoside triphosphate phosphatase activity 11.11% (8/72) 3.13 4e-06 0.000693
GO:0009266 response to temperature stimulus 4.17% (3/72) 5.64 3e-05 0.001375
GO:0016070 RNA metabolic process 11.11% (8/72) 2.44 0.000114 0.004578
GO:0042026 protein refolding 2.78% (2/72) 6.6 0.000189 0.00687
GO:0035639 purine ribonucleoside triphosphate binding 19.44% (14/72) 1.52 0.00031 0.009373
GO:0009987 cellular process 36.11% (26/72) 0.97 0.000308 0.010167
GO:0005524 ATP binding 18.06% (13/72) 1.54 0.000443 0.012364
GO:0008237 metallopeptidase activity 4.17% (3/72) 4.27 0.000524 0.013588
GO:0009628 response to abiotic stimulus 4.17% (3/72) 4.1 0.00073 0.017673
GO:0016226 iron-sulfur cluster assembly 2.78% (2/72) 5.41 0.001015 0.019389
GO:0031163 metallo-sulfur cluster assembly 2.78% (2/72) 5.41 0.001015 0.019389
GO:0006139 nucleobase-containing compound metabolic process 12.5% (9/72) 1.83 0.000926 0.019776
GO:0090304 nucleic acid metabolic process 11.11% (8/72) 2.0 0.000875 0.019854
GO:0043168 anion binding 20.83% (15/72) 1.25 0.001218 0.020093
GO:0032555 purine ribonucleotide binding 19.44% (14/72) 1.32 0.001165 0.02014
GO:0032553 ribonucleotide binding 19.44% (14/72) 1.3 0.001316 0.020762
GO:0016787 hydrolase activity 18.06% (13/72) 1.39 0.001163 0.021111
GO:0097367 carbohydrate derivative binding 19.44% (14/72) 1.29 0.001423 0.021525
GO:0043461 proton-transporting ATP synthase complex assembly 1.39% (1/72) 9.06 0.001878 0.021993
GO:0046483 heterocycle metabolic process 12.5% (9/72) 1.69 0.001777 0.02224
GO:0017076 purine nucleotide binding 19.44% (14/72) 1.25 0.001852 0.022406
GO:0140534 endoplasmic reticulum protein-containing complex 2.78% (2/72) 5.1 0.001562 0.022675
GO:1901363 heterocyclic compound binding 20.83% (15/72) 1.21 0.00163 0.022764
GO:0032559 adenyl ribonucleotide binding 18.06% (13/72) 1.33 0.001698 0.022827
GO:0036094 small molecule binding 20.83% (15/72) 1.2 0.001762 0.022838
GO:0006351 DNA-templated transcription 4.17% (3/72) 3.58 0.002089 0.023692
GO:0005783 endoplasmic reticulum 2.78% (2/72) 4.85 0.00222 0.023706
GO:0006725 cellular aromatic compound metabolic process 12.5% (9/72) 1.65 0.002216 0.024375
GO:0003824 catalytic activity 38.89% (28/72) 0.73 0.002366 0.02454
GO:1901360 organic cyclic compound metabolic process 12.5% (9/72) 1.62 0.002536 0.02557
GO:0030554 adenyl nucleotide binding 18.06% (13/72) 1.26 0.002639 0.02589
GO:0000166 nucleotide binding 19.44% (14/72) 1.17 0.003097 0.028822
GO:1901265 nucleoside phosphate binding 19.44% (14/72) 1.17 0.003097 0.028822
GO:0008143 poly(A) binding 1.39% (1/72) 7.47 0.005624 0.032929
GO:0070717 poly-purine tract binding 1.39% (1/72) 7.47 0.005624 0.032929
GO:1900364 negative regulation of mRNA polyadenylation 1.39% (1/72) 7.47 0.005624 0.032929
GO:0043488 regulation of mRNA stability 1.39% (1/72) 7.47 0.005624 0.032929
GO:0043487 regulation of RNA stability 1.39% (1/72) 7.47 0.005624 0.032929
GO:0050686 negative regulation of mRNA processing 1.39% (1/72) 7.47 0.005624 0.032929
GO:1903312 negative regulation of mRNA metabolic process 1.39% (1/72) 7.47 0.005624 0.032929
GO:0061013 regulation of mRNA catabolic process 1.39% (1/72) 7.47 0.005624 0.032929
GO:0006657 CDP-choline pathway 1.39% (1/72) 7.47 0.005624 0.032929
GO:0031441 negative regulation of mRNA 3'-end processing 1.39% (1/72) 7.47 0.005624 0.032929
GO:0031440 regulation of mRNA 3'-end processing 1.39% (1/72) 7.47 0.005624 0.032929
GO:0004105 choline-phosphate cytidylyltransferase activity 1.39% (1/72) 7.47 0.005624 0.032929
GO:0034511 U3 snoRNA binding 1.39% (1/72) 7.47 0.005624 0.032929
GO:1901668 regulation of superoxide dismutase activity 1.39% (1/72) 7.47 0.005624 0.032929
GO:0051341 regulation of oxidoreductase activity 1.39% (1/72) 7.47 0.005624 0.032929
GO:0051353 positive regulation of oxidoreductase activity 1.39% (1/72) 7.47 0.005624 0.032929
GO:0003727 single-stranded RNA binding 1.39% (1/72) 7.47 0.005624 0.032929
GO:1901671 positive regulation of superoxide dismutase activity 1.39% (1/72) 7.47 0.005624 0.032929
GO:0006423 cysteinyl-tRNA aminoacylation 1.39% (1/72) 8.06 0.003753 0.033228
GO:0004817 cysteine-tRNA ligase activity 1.39% (1/72) 8.06 0.003753 0.033228
GO:0004222 metalloendopeptidase activity 2.78% (2/72) 4.44 0.003864 0.033397
GO:0034654 nucleobase-containing compound biosynthetic process 5.56% (4/72) 2.62 0.004143 0.034974
GO:0034641 cellular nitrogen compound metabolic process 12.5% (9/72) 1.41 0.006607 0.038072
GO:0022607 cellular component assembly 4.17% (3/72) 2.97 0.006764 0.038365
GO:0005784 Sec61 translocon complex 1.39% (1/72) 7.06 0.007492 0.039994
GO:0004127 cytidylate kinase activity 1.39% (1/72) 7.06 0.007492 0.039994
GO:0071256 translocon complex 1.39% (1/72) 7.06 0.007492 0.039994
GO:0005787 signal peptidase complex 1.39% (1/72) 6.73 0.009356 0.041419
GO:0006621 protein retention in ER lumen 1.39% (1/72) 6.73 0.009356 0.041419
GO:0032507 maintenance of protein location in cell 1.39% (1/72) 6.73 0.009356 0.041419
GO:0051651 maintenance of location in cell 1.39% (1/72) 6.73 0.009356 0.041419
GO:0045185 maintenance of protein location 1.39% (1/72) 6.73 0.009356 0.041419
GO:0046923 ER retention sequence binding 1.39% (1/72) 6.73 0.009356 0.041419
GO:0072595 maintenance of protein localization in organelle 1.39% (1/72) 6.73 0.009356 0.041419
GO:0031329 regulation of cellular catabolic process 1.39% (1/72) 6.73 0.009356 0.041419
GO:0035437 maintenance of protein localization in endoplasmic reticulum 1.39% (1/72) 6.73 0.009356 0.041419
GO:0032774 RNA biosynthetic process 4.17% (3/72) 2.92 0.007419 0.041431
GO:0051540 metal cluster binding 2.78% (2/72) 3.65 0.011231 0.041602
GO:0051536 iron-sulfur cluster binding 2.78% (2/72) 3.65 0.011231 0.041602
GO:0044237 cellular metabolic process 22.22% (16/72) 0.9 0.009584 0.041917
GO:0006396 RNA processing 5.56% (4/72) 2.54 0.005097 0.042052
GO:0000375 RNA splicing, via transesterification reactions 2.78% (2/72) 3.63 0.011485 0.042112
GO:0034660 ncRNA metabolic process 4.17% (3/72) 2.88 0.008009 0.042134
GO:0015865 purine nucleotide transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:0015866 ADP transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:0015867 ATP transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:0140021 mitochondrial ADP transmembrane transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:0015868 purine ribonucleotide transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:0070071 proton-transporting two-sector ATPase complex assembly 1.39% (1/72) 6.47 0.011217 0.042416
GO:0051503 adenine nucleotide transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:0072530 purine-containing compound transmembrane transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:1990544 mitochondrial ATP transmembrane transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:1901679 nucleotide transmembrane transport 1.39% (1/72) 6.47 0.011217 0.042416
GO:0018130 heterocycle biosynthetic process 5.56% (4/72) 2.26 0.009835 0.0425
GO:0006364 rRNA processing 2.78% (2/72) 3.87 0.008388 0.043499
GO:0000398 mRNA splicing, via spliceosome 2.78% (2/72) 3.85 0.008611 0.044025
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.78% (2/72) 3.7 0.010486 0.04426
GO:0016072 rRNA metabolic process 2.78% (2/72) 3.7 0.010486 0.04426
GO:0008150 biological_process 44.44% (32/72) 0.54 0.008901 0.044878
GO:1903311 regulation of mRNA metabolic process 1.39% (1/72) 6.25 0.013075 0.045636
GO:0050684 regulation of mRNA processing 1.39% (1/72) 6.25 0.013075 0.045636
GO:0009041 UMP/dUMP kinase activity 1.39% (1/72) 6.25 0.013075 0.045636
GO:0006656 phosphatidylcholine biosynthetic process 1.39% (1/72) 6.25 0.013075 0.045636
GO:0043167 ion binding 23.61% (17/72) 0.81 0.013267 0.045865
GO:0019438 aromatic compound biosynthetic process 5.56% (4/72) 2.29 0.009245 0.045971
GO:1901362 organic cyclic compound biosynthetic process 5.56% (4/72) 2.14 0.013059 0.047404
GO:0015217 ADP transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.39% (1/72) 5.89 0.016779 0.04912
GO:0046540 U4/U6 x U5 tri-snRNP complex 1.39% (1/72) 5.89 0.016779 0.04912
GO:0097526 spliceosomal tri-snRNP complex 1.39% (1/72) 5.89 0.016779 0.04912
GO:0051235 maintenance of location 1.39% (1/72) 5.89 0.016779 0.04912
GO:0015215 nucleotide transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0042277 peptide binding 1.39% (1/72) 5.89 0.016779 0.04912
GO:0005048 signal sequence binding 1.39% (1/72) 5.89 0.016779 0.04912
GO:0000295 adenine nucleotide transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0008514 organic anion transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0016157 sucrose synthase activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0015605 organophosphate ester transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0005346 purine ribonucleotide transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0015216 purine nucleotide transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0005347 ATP transmembrane transporter activity 1.39% (1/72) 5.89 0.016779 0.04912
GO:0031090 organelle membrane 2.78% (2/72) 3.46 0.014438 0.049443
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (72) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms