Coexpression cluster: Cluster_106 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901566 organonitrogen compound biosynthetic process 14.29% (11/77) 2.97 0.0 5.9e-05
GO:1901605 alpha-amino acid metabolic process 6.49% (5/77) 4.08 1.2e-05 0.001527
GO:0044249 cellular biosynthetic process 15.58% (12/77) 2.21 1e-05 0.001857
GO:1901576 organic substance biosynthetic process 15.58% (12/77) 2.1 2e-05 0.001903
GO:0009058 biosynthetic process 15.58% (12/77) 1.99 4.6e-05 0.002437
GO:0006520 amino acid metabolic process 7.79% (6/77) 3.26 4e-05 0.002476
GO:1901607 alpha-amino acid biosynthetic process 5.19% (4/77) 4.3 5.3e-05 0.002477
GO:0044271 cellular nitrogen compound biosynthetic process 11.69% (9/77) 2.48 3.4e-05 0.002513
GO:0008652 amino acid biosynthetic process 5.19% (4/77) 4.14 8.2e-05 0.00341
GO:0004843 cysteine-type deubiquitinase activity 3.9% (3/77) 4.74 0.0002 0.007482
GO:0034641 cellular nitrogen compound metabolic process 15.58% (12/77) 1.73 0.000248 0.008429
GO:0101005 deubiquitinase activity 3.9% (3/77) 4.48 0.00034 0.010606
GO:0019783 ubiquitin-like protein peptidase activity 3.9% (3/77) 4.42 0.000387 0.011139
GO:0110165 cellular anatomical entity 18.18% (14/77) 1.42 0.000645 0.017234
GO:0006082 organic acid metabolic process 7.79% (6/77) 2.46 0.000804 0.017684
GO:0018130 heterocycle biosynthetic process 6.49% (5/77) 2.49 0.002032 0.018539
GO:0043436 oxoacid metabolic process 7.79% (6/77) 2.46 0.000796 0.018611
GO:0016869 intramolecular aminotransferase activity 1.3% (1/77) 8.96 0.002009 0.018781
GO:0008361 regulation of cell size 1.3% (1/77) 8.96 0.002009 0.018781
GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity 1.3% (1/77) 8.96 0.002009 0.018781
GO:0034709 methylosome 1.3% (1/77) 8.96 0.002009 0.018781
GO:0034715 pICln-Sm protein complex 1.3% (1/77) 8.96 0.002009 0.018781
GO:0101030 tRNA-guanine transglycosylation 1.3% (1/77) 8.96 0.002009 0.018781
GO:0018160 peptidyl-pyrromethane cofactor linkage 1.3% (1/77) 8.96 0.002009 0.018781
GO:0016435 rRNA (guanine) methyltransferase activity 1.3% (1/77) 8.96 0.002009 0.018781
GO:0004048 anthranilate phosphoribosyltransferase activity 1.3% (1/77) 8.96 0.002009 0.018781
GO:0018198 peptidyl-cysteine modification 1.3% (1/77) 8.96 0.002009 0.018781
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 1.3% (1/77) 8.96 0.002009 0.018781
GO:0004418 hydroxymethylbilane synthase activity 1.3% (1/77) 8.96 0.002009 0.018781
GO:0006884 cell volume homeostasis 1.3% (1/77) 8.96 0.002009 0.018781
GO:0070476 rRNA (guanine-N7)-methylation 1.3% (1/77) 8.96 0.002009 0.018781
GO:0019752 carboxylic acid metabolic process 7.79% (6/77) 2.47 0.000774 0.019291
GO:0009987 cellular process 32.47% (25/77) 0.81 0.002293 0.019489
GO:0044283 small molecule biosynthetic process 5.19% (4/77) 2.88 0.002206 0.019642
GO:0009067 aspartate family amino acid biosynthetic process 2.6% (2/77) 4.83 0.00227 0.019743
GO:0003674 molecular_function 62.34% (48/77) 0.45 0.002385 0.019825
GO:0046394 carboxylic acid biosynthetic process 5.19% (4/77) 3.18 0.001029 0.020261
GO:0016053 organic acid biosynthetic process 5.19% (4/77) 3.18 0.001029 0.020261
GO:0009066 aspartate family amino acid metabolic process 2.6% (2/77) 4.75 0.002534 0.020604
GO:0032561 guanyl ribonucleotide binding 5.19% (4/77) 3.11 0.001232 0.021944
GO:0005525 GTP binding 5.19% (4/77) 3.11 0.001232 0.021944
GO:0033013 tetrapyrrole metabolic process 2.6% (2/77) 4.67 0.002812 0.022378
GO:1901362 organic cyclic compound biosynthetic process 6.49% (5/77) 2.37 0.00292 0.022753
GO:0016763 pentosyltransferase activity 2.6% (2/77) 5.15 0.001455 0.023663
GO:0019001 guanyl nucleotide binding 5.19% (4/77) 3.06 0.001396 0.023735
GO:0005575 cellular_component 20.78% (16/77) 1.17 0.001638 0.02553
GO:0033014 tetrapyrrole biosynthetic process 2.6% (2/77) 5.01 0.001783 0.026676
GO:0009064 glutamine family amino acid metabolic process 2.6% (2/77) 4.96 0.0019 0.027325
GO:0036265 RNA (guanine-N7)-methylation 1.3% (1/77) 7.96 0.004013 0.028865
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 1.3% (1/77) 7.96 0.004013 0.028865
GO:0008479 tRNA-guanosine(34) queuine transglycosylase activity 1.3% (1/77) 7.96 0.004013 0.028865
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 1.3% (1/77) 7.96 0.004013 0.028865
GO:0006412 translation 5.19% (4/77) 2.55 0.004898 0.034564
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.3% (1/77) 7.37 0.006014 0.035145
GO:0007021 tubulin complex assembly 1.3% (1/77) 7.37 0.006014 0.035145
GO:0048487 beta-tubulin binding 1.3% (1/77) 7.37 0.006014 0.035145
GO:0032955 regulation of division septum assembly 1.3% (1/77) 7.37 0.006014 0.035145
GO:0032954 regulation of cytokinetic process 1.3% (1/77) 7.37 0.006014 0.035145
GO:0006424 glutamyl-tRNA aminoacylation 1.3% (1/77) 7.37 0.006014 0.035145
GO:0070402 NADPH binding 1.3% (1/77) 7.37 0.006014 0.035145
GO:0004818 glutamate-tRNA ligase activity 1.3% (1/77) 7.37 0.006014 0.035145
GO:1901891 regulation of cell septum assembly 1.3% (1/77) 7.37 0.006014 0.035145
GO:0006807 nitrogen compound metabolic process 23.38% (18/77) 0.89 0.006299 0.035692
GO:0006518 peptide metabolic process 5.19% (4/77) 2.44 0.00646 0.036062
GO:0140098 catalytic activity, acting on RNA 5.19% (4/77) 2.45 0.006279 0.036128
GO:0043043 peptide biosynthetic process 5.19% (4/77) 2.52 0.005315 0.036143
GO:0008234 cysteine-type peptidase activity 3.9% (3/77) 3.1 0.005257 0.036409
GO:0043604 amide biosynthetic process 5.19% (4/77) 2.42 0.006833 0.037583
GO:0000786 nucleosome 2.6% (2/77) 3.98 0.007185 0.038944
GO:1901564 organonitrogen compound metabolic process 19.48% (15/77) 0.99 0.007424 0.039105
GO:0008172 S-methyltransferase activity 1.3% (1/77) 6.96 0.008011 0.039421
GO:0005665 RNA polymerase II, core complex 1.3% (1/77) 6.96 0.008011 0.039421
GO:0004056 argininosuccinate lyase activity 1.3% (1/77) 6.96 0.008011 0.039421
GO:0042450 arginine biosynthetic process via ornithine 1.3% (1/77) 6.96 0.008011 0.039421
GO:0044281 small molecule metabolic process 7.79% (6/77) 1.81 0.007383 0.039446
GO:0032993 protein-DNA complex 2.6% (2/77) 3.94 0.007632 0.039646
GO:0005198 structural molecule activity 5.19% (4/77) 2.33 0.008468 0.041129
GO:0043015 gamma-tubulin binding 1.3% (1/77) 6.64 0.010004 0.043504
GO:0005815 microtubule organizing center 1.3% (1/77) 6.64 0.010004 0.043504
GO:0000922 spindle pole 1.3% (1/77) 6.64 0.010004 0.043504
GO:0007023 post-chaperonin tubulin folding pathway 1.3% (1/77) 6.64 0.010004 0.043504
GO:0006591 ornithine metabolic process 1.3% (1/77) 6.64 0.010004 0.043504
GO:0016020 membrane 9.09% (7/77) 1.57 0.009137 0.043812
GO:0043603 amide metabolic process 5.19% (4/77) 2.27 0.009769 0.045105
GO:0046483 heterocycle metabolic process 10.39% (8/77) 1.43 0.00966 0.045163
GO:0009059 macromolecule biosynthetic process 6.49% (5/77) 1.92 0.01052 0.045225
GO:0034660 ncRNA metabolic process 3.9% (3/77) 2.78 0.009623 0.045557
GO:0015369 calcium:proton antiporter activity 1.3% (1/77) 6.37 0.011992 0.048227
GO:0015368 calcium:monoatomic cation antiporter activity 1.3% (1/77) 6.37 0.011992 0.048227
GO:0006541 glutamine metabolic process 1.3% (1/77) 6.37 0.011992 0.048227
GO:0007020 microtubule nucleation 1.3% (1/77) 6.37 0.011992 0.048227
GO:0019438 aromatic compound biosynthetic process 5.19% (4/77) 2.19 0.011637 0.0489
GO:0006725 cellular aromatic compound metabolic process 10.39% (8/77) 1.38 0.011601 0.049303
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (77) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms