Coexpression cluster: Cluster_68 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044249 cellular biosynthetic process 56.67% (68/120) 4.07 0.0 0.0
GO:0009058 biosynthetic process 56.67% (68/120) 3.85 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 57.5% (69/120) 3.61 0.0 0.0
GO:0006518 peptide metabolic process 50.0% (60/120) 5.71 0.0 0.0
GO:0006412 translation 50.0% (60/120) 5.82 0.0 0.0
GO:0005840 ribosome 45.83% (55/120) 5.8 0.0 0.0
GO:0005198 structural molecule activity 52.5% (63/120) 5.66 0.0 0.0
GO:0003735 structural constituent of ribosome 52.5% (63/120) 5.87 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 50.83% (61/120) 4.8 0.0 0.0
GO:0009059 macromolecule biosynthetic process 55.83% (67/120) 5.02 0.0 0.0
GO:0043043 peptide biosynthetic process 50.0% (60/120) 5.79 0.0 0.0
GO:1901576 organic substance biosynthetic process 56.67% (68/120) 3.97 0.0 0.0
GO:0005575 cellular_component 72.5% (87/120) 2.97 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 51.67% (62/120) 4.62 0.0 0.0
GO:0043228 non-membrane-bounded organelle 48.33% (58/120) 5.47 0.0 0.0
GO:0043229 intracellular organelle 52.5% (63/120) 4.4 0.0 0.0
GO:0043604 amide biosynthetic process 50.0% (60/120) 5.68 0.0 0.0
GO:0043226 organelle 52.5% (63/120) 4.4 0.0 0.0
GO:0043603 amide metabolic process 50.0% (60/120) 5.53 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 48.33% (58/120) 5.47 0.0 0.0
GO:0110165 cellular anatomical entity 55.0% (66/120) 3.01 0.0 0.0
GO:0044237 cellular metabolic process 64.17% (77/120) 2.43 0.0 0.0
GO:0043170 macromolecule metabolic process 62.5% (75/120) 2.49 0.0 0.0
GO:0009987 cellular process 73.33% (88/120) 1.99 0.0 0.0
GO:0019538 protein metabolic process 50.83% (61/120) 2.67 0.0 0.0
GO:1990904 ribonucleoprotein complex 20.0% (24/120) 5.44 0.0 0.0
GO:0006807 nitrogen compound metabolic process 58.33% (70/120) 2.21 0.0 0.0
GO:0044391 ribosomal subunit 15.83% (19/120) 6.32 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 51.67% (62/120) 2.39 0.0 0.0
GO:0071704 organic substance metabolic process 63.33% (76/120) 1.94 0.0 0.0
GO:0008152 metabolic process 64.17% (77/120) 1.87 0.0 0.0
GO:0044238 primary metabolic process 58.33% (70/120) 1.94 0.0 0.0
GO:0008150 biological_process 74.17% (89/120) 1.28 0.0 0.0
GO:0015935 small ribosomal subunit 9.17% (11/120) 6.97 0.0 0.0
GO:0032991 protein-containing complex 25.83% (31/120) 3.1 0.0 0.0
GO:0003723 RNA binding 18.33% (22/120) 3.24 0.0 0.0
GO:0003674 molecular_function 77.5% (93/120) 0.76 0.0 0.0
GO:0015934 large ribosomal subunit 6.67% (8/120) 5.73 0.0 0.0
GO:0003676 nucleic acid binding 26.67% (32/120) 1.95 0.0 0.0
GO:0006414 translational elongation 5.0% (6/120) 5.78 0.0 0.0
GO:0042254 ribosome biogenesis 4.17% (5/120) 6.18 0.0 0.0
GO:0008135 translation factor activity, RNA binding 5.83% (7/120) 4.68 0.0 0.0
GO:0090079 translation regulator activity, nucleic acid binding 5.83% (7/120) 4.68 0.0 0.0
GO:0045182 translation regulator activity 5.83% (7/120) 4.59 0.0 0.0
GO:0022613 ribonucleoprotein complex biogenesis 4.17% (5/120) 5.83 0.0 0.0
GO:0003746 translation elongation factor activity 4.17% (5/120) 5.78 0.0 0.0
GO:0006334 nucleosome assembly 3.33% (4/120) 6.07 0.0 2e-06
GO:0034728 nucleosome organization 3.33% (4/120) 6.07 0.0 2e-06
GO:0065004 protein-DNA complex assembly 3.33% (4/120) 5.19 4e-06 2.5e-05
GO:0044085 cellular component biogenesis 4.17% (5/120) 4.25 7e-06 3.9e-05
GO:0005730 nucleolus 2.5% (3/120) 6.2 8e-06 4.5e-05
GO:0065003 protein-containing complex assembly 5.0% (6/120) 3.67 9e-06 4.5e-05
GO:0071840 cellular component organization or biogenesis 9.17% (11/120) 2.34 1.3e-05 6.6e-05
GO:0022625 cytosolic large ribosomal subunit 2.5% (3/120) 5.9 1.6e-05 8.3e-05
GO:0043022 ribosome binding 2.5% (3/120) 5.66 2.8e-05 0.000141
GO:0030515 snoRNA binding 2.5% (3/120) 5.51 3.8e-05 0.000189
GO:0043021 ribonucleoprotein complex binding 2.5% (3/120) 5.44 4.4e-05 0.000214
GO:0022607 cellular component assembly 5.0% (6/120) 3.23 4.7e-05 0.000222
GO:0005854 nascent polypeptide-associated complex 1.67% (2/120) 7.32 5.8e-05 0.000273
GO:0001522 pseudouridine synthesis 2.5% (3/120) 5.26 6.5e-05 0.000302
GO:0006338 chromatin remodeling 3.33% (4/120) 4.19 7.1e-05 0.000324
GO:0006364 rRNA processing 3.33% (4/120) 4.13 8.4e-05 0.000376
GO:0006325 chromatin organization 3.33% (4/120) 4.03 0.000109 0.000471
GO:0043933 protein-containing complex organization 5.0% (6/120) 3.01 0.000109 0.000479
GO:0019843 rRNA binding 2.5% (3/120) 4.95 0.000126 0.000537
GO:0016072 rRNA metabolic process 3.33% (4/120) 3.96 0.000132 0.000555
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.67% (2/120) 6.73 0.000145 0.000598
GO:0071824 protein-DNA complex organization 3.33% (4/120) 3.76 0.000224 0.000913
GO:0000470 maturation of LSU-rRNA 1.67% (2/120) 6.32 0.000269 0.001079
GO:0097159 organic cyclic compound binding 29.17% (35/120) 0.8 0.000512 0.002026
GO:0031428 box C/D RNP complex 1.67% (2/120) 5.51 0.000863 0.003274
GO:0000387 spliceosomal snRNP assembly 1.67% (2/120) 5.51 0.000863 0.003274
GO:0016070 RNA metabolic process 7.5% (9/120) 1.87 0.000847 0.003304
GO:0034470 ncRNA processing 3.33% (4/120) 3.19 0.001009 0.003775
GO:0006396 RNA processing 5.0% (6/120) 2.38 0.001081 0.003991
GO:0005852 eukaryotic translation initiation factor 3 complex 1.67% (2/120) 5.15 0.001439 0.005244
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 1.67% (2/120) 5.07 0.001605 0.005773
GO:0032040 small-subunit processome 1.67% (2/120) 4.93 0.001963 0.00697
GO:0030684 preribosome 1.67% (2/120) 4.8 0.002355 0.008258
GO:0005681 spliceosomal complex 1.67% (2/120) 4.73 0.002564 0.008878
GO:0006446 regulation of translational initiation 0.83% (1/120) 8.32 0.00313 0.010705
GO:0022618 protein-RNA complex assembly 1.67% (2/120) 4.51 0.003483 0.011765
GO:0071826 protein-RNA complex organization 1.67% (2/120) 4.32 0.004533 0.015128
GO:0034660 ncRNA metabolic process 3.33% (4/120) 2.56 0.004919 0.01622
GO:0044877 protein-containing complex binding 2.5% (3/120) 3.11 0.00519 0.016913
GO:0090304 nucleic acid metabolic process 7.5% (9/120) 1.43 0.006525 0.021018
GO:0005634 nucleus 4.17% (5/120) 2.01 0.008388 0.026706
GO:0005853 eukaryotic translation elongation factor 1 complex 0.83% (1/120) 6.73 0.009362 0.029469
GO:0006139 nucleobase-containing compound metabolic process 8.33% (10/120) 1.25 0.009877 0.030741
GO:0003743 translation initiation factor activity 1.67% (2/120) 3.7 0.010382 0.031953
GO:0016043 cellular component organization 5.0% (6/120) 1.64 0.012979 0.039507
GO:0098798 mitochondrial protein-containing complex 1.67% (2/120) 3.46 0.014329 0.043142
GO:0009451 RNA modification 2.5% (3/120) 2.56 0.014748 0.043928
GO:0032549 ribonucleoside binding 0.83% (1/120) 6.0 0.015555 0.044883
GO:0031369 translation initiation factor binding 0.83% (1/120) 6.0 0.015555 0.044883
GO:0001882 nucleoside binding 0.83% (1/120) 6.0 0.015555 0.044883
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (120) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms