Coexpression cluster: Cluster_105 (Setaria viridis HCCA coexpression clusters - Anderson et al (2021))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 29.03% (18/62) 2.62 0.0 0.0
GO:0016070 RNA metabolic process 19.35% (12/62) 3.24 0.0 1e-06
GO:0009451 RNA modification 11.29% (7/62) 4.73 0.0 1e-06
GO:0006396 RNA processing 14.52% (9/62) 3.92 0.0 1e-06
GO:0006139 nucleobase-containing compound metabolic process 22.58% (14/62) 2.68 0.0 2e-06
GO:0046483 heterocycle metabolic process 22.58% (14/62) 2.55 0.0 4e-06
GO:0090304 nucleic acid metabolic process 19.35% (12/62) 2.8 0.0 4e-06
GO:0006725 cellular aromatic compound metabolic process 22.58% (14/62) 2.5 0.0 5e-06
GO:1901360 organic cyclic compound metabolic process 22.58% (14/62) 2.47 0.0 5e-06
GO:0034470 ncRNA processing 9.68% (6/62) 4.73 0.0 5e-06
GO:0001510 RNA methylation 6.45% (4/62) 6.18 0.0 8e-06
GO:0044237 cellular metabolic process 35.48% (22/62) 1.58 1e-06 3.4e-05
GO:0034660 ncRNA metabolic process 9.68% (6/62) 4.1 1e-06 3.5e-05
GO:0044238 primary metabolic process 40.32% (25/62) 1.4 2e-06 3.7e-05
GO:0043170 macromolecule metabolic process 33.87% (21/62) 1.6 2e-06 3.9e-05
GO:0071704 organic substance metabolic process 41.94% (26/62) 1.34 2e-06 4e-05
GO:0006807 nitrogen compound metabolic process 35.48% (22/62) 1.5 3e-06 5.6e-05
GO:0003723 RNA binding 14.52% (9/62) 2.9 3e-06 5.6e-05
GO:0005198 structural molecule activity 11.29% (7/62) 3.45 4e-06 6.1e-05
GO:0009987 cellular process 43.55% (27/62) 1.24 5e-06 7.5e-05
GO:0008152 metabolic process 41.94% (26/62) 1.25 6e-06 9.3e-05
GO:0006364 rRNA processing 6.45% (4/62) 5.08 6e-06 9.4e-05
GO:0043414 macromolecule methylation 6.45% (4/62) 4.95 9e-06 0.000124
GO:0016072 rRNA metabolic process 6.45% (4/62) 4.91 1e-05 0.000131
GO:0032259 methylation 6.45% (4/62) 4.69 1.8e-05 0.000234
GO:0006400 tRNA modification 4.84% (3/62) 5.54 3.8e-05 0.000466
GO:0003676 nucleic acid binding 22.58% (14/62) 1.71 6.9e-05 0.000807
GO:0070475 rRNA base methylation 3.23% (2/62) 6.95 0.000115 0.001259
GO:0030488 tRNA methylation 3.23% (2/62) 6.95 0.000115 0.001259
GO:0005575 cellular_component 25.81% (16/62) 1.48 0.000124 0.001316
GO:0031167 rRNA methylation 3.23% (2/62) 6.81 0.00014 0.001394
GO:0003674 molecular_function 69.35% (43/62) 0.6 0.00014 0.001432
GO:0008033 tRNA processing 4.84% (3/62) 4.88 0.000149 0.001439
GO:0005840 ribosome 8.06% (5/62) 3.29 0.00016 0.001497
GO:0008150 biological_process 53.23% (33/62) 0.8 0.000166 0.001509
GO:0044249 cellular biosynthetic process 14.52% (9/62) 2.11 0.000222 0.001961
GO:0003735 structural constituent of ribosome 8.06% (5/62) 3.17 0.000241 0.002067
GO:0000154 rRNA modification 3.23% (2/62) 6.37 0.000267 0.002231
GO:1901576 organic substance biosynthetic process 14.52% (9/62) 2.0 0.000378 0.003079
GO:0005488 binding 50.0% (31/62) 0.78 0.000432 0.003438
GO:0032991 protein-containing complex 12.9% (8/62) 2.1 0.000518 0.004019
GO:0005525 GTP binding 6.45% (4/62) 3.42 0.000545 0.00403
GO:0032561 guanyl ribonucleotide binding 6.45% (4/62) 3.42 0.000545 0.00403
GO:0043228 non-membrane-bounded organelle 8.06% (5/62) 2.89 0.000585 0.004131
GO:0043232 intracellular non-membrane-bounded organelle 8.06% (5/62) 2.89 0.000585 0.004131
GO:0019001 guanyl nucleotide binding 6.45% (4/62) 3.37 0.000619 0.004279
GO:0009058 biosynthetic process 14.52% (9/62) 1.88 0.000686 0.004543
GO:0009059 macromolecule biosynthetic process 9.68% (6/62) 2.5 0.00068 0.004601
GO:0097159 organic cyclic compound binding 33.87% (21/62) 1.01 0.000807 0.005237
GO:0043229 intracellular organelle 11.29% (7/62) 2.19 0.000844 0.005265
GO:0043226 organelle 11.29% (7/62) 2.19 0.000844 0.005265
GO:1901566 organonitrogen compound biosynthetic process 9.68% (6/62) 2.4 0.000944 0.005771
GO:0006399 tRNA metabolic process 4.84% (3/62) 3.81 0.001301 0.007807
GO:0000408 EKC/KEOPS complex 1.61% (1/62) 9.27 0.001617 0.008717
GO:0030620 U2 snRNA binding 1.61% (1/62) 9.27 0.001617 0.008717
GO:0004648 O-phospho-L-serine:2-oxoglutarate aminotransferase activity 1.61% (1/62) 9.27 0.001617 0.008717
GO:0070037 rRNA (pseudouridine) methyltransferase activity 1.61% (1/62) 9.27 0.001617 0.008717
GO:0016429 obsolete tRNA (adenine-N1)-methyltransferase activity 1.61% (1/62) 9.27 0.001617 0.008717
GO:0008173 RNA methyltransferase activity 3.23% (2/62) 5.1 0.001565 0.009216
GO:0006412 translation 6.45% (4/62) 2.87 0.002239 0.011865
GO:0043043 peptide biosynthetic process 6.45% (4/62) 2.83 0.002435 0.012695
GO:0030688 preribosome, small subunit precursor 1.61% (1/62) 8.27 0.003232 0.014476
GO:0002949 tRNA threonylcarbamoyladenosine modification 1.61% (1/62) 8.27 0.003232 0.014476
GO:0031515 tRNA (m1A) methyltransferase complex 1.61% (1/62) 8.27 0.003232 0.014476
GO:0004019 adenylosuccinate synthase activity 1.61% (1/62) 8.27 0.003232 0.014476
GO:0043527 tRNA methyltransferase complex 1.61% (1/62) 8.27 0.003232 0.014476
GO:0070525 tRNA threonylcarbamoyladenosine metabolic process 1.61% (1/62) 8.27 0.003232 0.014476
GO:0110165 cellular anatomical entity 17.74% (11/62) 1.38 0.002899 0.014871
GO:1990904 ribonucleoprotein complex 4.84% (3/62) 3.39 0.002997 0.014891
GO:0006518 peptide metabolic process 6.45% (4/62) 2.75 0.002978 0.015031
GO:0043604 amide biosynthetic process 6.45% (4/62) 2.73 0.003155 0.015438
GO:0003924 GTPase activity 4.84% (3/62) 3.27 0.003765 0.01663
GO:0043603 amide metabolic process 6.45% (4/62) 2.58 0.004567 0.019895
GO:0008184 glycogen phosphorylase activity 1.61% (1/62) 7.69 0.004844 0.02054
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity 1.61% (1/62) 7.69 0.004844 0.02054
GO:0008250 oligosaccharyltransferase complex 1.61% (1/62) 7.27 0.006454 0.025979
GO:0003844 1,4-alpha-glucan branching enzyme activity 1.61% (1/62) 7.27 0.006454 0.025979
GO:0017069 snRNA binding 1.61% (1/62) 7.27 0.006454 0.025979
GO:0000398 mRNA splicing, via spliceosome 3.23% (2/62) 4.06 0.00645 0.026989
GO:0017111 ribonucleoside triphosphate phosphatase activity 6.45% (4/62) 2.34 0.008089 0.030624
GO:0006564 L-serine biosynthetic process 1.61% (1/62) 6.95 0.008061 0.030885
GO:0002182 cytoplasmic translational elongation 1.61% (1/62) 6.95 0.008061 0.030885
GO:0061608 nuclear import signal receptor activity 1.61% (1/62) 6.95 0.008061 0.030885
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 3.23% (2/62) 3.91 0.007865 0.031265
GO:0008135 translation factor activity, RNA binding 3.23% (2/62) 3.83 0.008814 0.032218
GO:0090079 translation regulator activity, nucleic acid binding 3.23% (2/62) 3.83 0.008814 0.032218
GO:0000375 RNA splicing, via transesterification reactions 3.23% (2/62) 3.85 0.008621 0.032252
GO:0000502 proteasome complex 1.61% (1/62) 6.69 0.009666 0.034152
GO:0008168 methyltransferase activity 4.84% (3/62) 2.79 0.009528 0.034431
GO:0044271 cellular nitrogen compound biosynthetic process 8.06% (5/62) 1.94 0.009647 0.034469
GO:0045182 translation regulator activity 3.23% (2/62) 3.73 0.010017 0.034625
GO:0016462 pyrophosphatase activity 6.45% (4/62) 2.26 0.009916 0.034652
GO:0043412 macromolecule modification 14.52% (9/62) 1.3 0.010148 0.034699
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.45% (4/62) 2.22 0.010716 0.036253
GO:0016817 hydrolase activity, acting on acid anhydrides 6.45% (4/62) 2.22 0.010854 0.036331
GO:0016741 transferase activity, transferring one-carbon groups 4.84% (3/62) 2.7 0.011239 0.03723
GO:0008380 RNA splicing 3.23% (2/62) 3.63 0.011507 0.037725
GO:0004017 adenylate kinase activity 1.61% (1/62) 6.27 0.012867 0.041752
GO:0003747 translation release factor activity 1.61% (1/62) 6.1 0.014464 0.045995
GO:0008079 translation termination factor activity 1.61% (1/62) 6.1 0.014464 0.045995
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (62) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms