Coexpression cluster: Cluster_134 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043604 amide biosynthetic process 14.97% (28/187) 3.71 0.0 0.0
GO:0043603 amide metabolic process 14.97% (28/187) 3.57 0.0 0.0
GO:0005840 ribosome 13.37% (25/187) 3.81 0.0 0.0
GO:0006412 translation 13.37% (25/187) 3.67 0.0 0.0
GO:0043043 peptide biosynthetic process 13.37% (25/187) 3.64 0.0 0.0
GO:0003735 structural constituent of ribosome 13.37% (25/187) 3.64 0.0 0.0
GO:0006518 peptide metabolic process 13.37% (25/187) 3.57 0.0 0.0
GO:0005198 structural molecule activity 13.37% (25/187) 3.44 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 13.37% (25/187) 3.42 0.0 0.0
GO:0043228 non-membrane-bounded organelle 13.37% (25/187) 3.42 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 16.58% (31/187) 2.76 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 15.51% (29/187) 2.85 0.0 0.0
GO:0044249 cellular biosynthetic process 19.25% (36/187) 2.36 0.0 0.0
GO:0009059 macromolecule biosynthetic process 14.44% (27/187) 2.86 0.0 0.0
GO:0000786 nucleosome 6.42% (12/187) 4.96 0.0 0.0
GO:1901576 organic substance biosynthetic process 19.25% (36/187) 2.26 0.0 0.0
GO:0032993 protein-DNA complex 6.42% (12/187) 4.91 0.0 0.0
GO:0043229 intracellular organelle 16.04% (30/187) 2.51 0.0 0.0
GO:0043226 organelle 16.04% (30/187) 2.51 0.0 0.0
GO:0009058 biosynthetic process 19.25% (36/187) 2.15 0.0 0.0
GO:0005575 cellular_component 29.95% (56/187) 1.54 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 18.72% (35/187) 1.78 0.0 0.0
GO:0046982 protein heterodimerization activity 5.35% (10/187) 4.05 0.0 0.0
GO:0032991 protein-containing complex 13.9% (26/187) 1.98 0.0 0.0
GO:0110165 cellular anatomical entity 20.32% (38/187) 1.43 0.0 0.0
GO:0044391 ribosomal subunit 4.28% (8/187) 3.95 0.0 1e-06
GO:0044237 cellular metabolic process 26.74% (50/187) 1.04 0.0 6e-06
GO:1990904 ribonucleoprotein complex 4.81% (9/187) 3.08 1e-06 2.2e-05
GO:1901564 organonitrogen compound metabolic process 22.46% (42/187) 1.08 2e-06 3e-05
GO:0044238 primary metabolic process 29.95% (56/187) 0.88 2e-06 3.6e-05
GO:0015935 small ribosomal subunit 2.67% (5/187) 4.44 3e-06 4.9e-05
GO:0019538 protein metabolic process 19.25% (36/187) 1.16 4e-06 5.7e-05
GO:0009987 cellular process 33.69% (63/187) 0.76 7e-06 9.2e-05
GO:0006807 nitrogen compound metabolic process 25.67% (48/187) 0.9 1e-05 0.000139
GO:0071704 organic substance metabolic process 30.48% (57/187) 0.79 1.3e-05 0.000169
GO:0008150 biological_process 47.59% (89/187) 0.53 1.9e-05 0.000244
GO:0046983 protein dimerization activity 5.88% (11/187) 2.26 2.1e-05 0.000263
GO:0006086 acetyl-CoA biosynthetic process from pyruvate 1.6% (3/187) 5.56 3e-05 0.00036
GO:0003677 DNA binding 11.23% (21/187) 1.41 4.5e-05 0.000528
GO:0035384 thioester biosynthetic process 1.6% (3/187) 5.32 5.2e-05 0.000547
GO:0071616 acyl-CoA biosynthetic process 1.6% (3/187) 5.32 5.2e-05 0.000547
GO:0006085 acetyl-CoA biosynthetic process 1.6% (3/187) 5.32 5.2e-05 0.000547
GO:0032787 monocarboxylic acid metabolic process 3.74% (7/187) 2.89 4.9e-05 0.000558
GO:0008152 metabolic process 31.02% (58/187) 0.71 5.5e-05 0.000568
GO:0043170 macromolecule metabolic process 22.46% (42/187) 0.88 6.3e-05 0.000636
GO:0006084 acetyl-CoA metabolic process 1.6% (3/187) 5.02 0.0001 0.000988
GO:0003676 nucleic acid binding 16.04% (30/187) 1.06 0.000104 0.001004
GO:0006637 acyl-CoA metabolic process 1.6% (3/187) 4.94 0.000121 0.001122
GO:0035383 thioester metabolic process 1.6% (3/187) 4.94 0.000121 0.001122
GO:0034033 purine nucleoside bisphosphate biosynthetic process 1.6% (3/187) 4.78 0.000171 0.001493
GO:0034030 ribonucleoside bisphosphate biosynthetic process 1.6% (3/187) 4.78 0.000171 0.001493
GO:0033866 nucleoside bisphosphate biosynthetic process 1.6% (3/187) 4.78 0.000171 0.001493
GO:0009263 deoxyribonucleotide biosynthetic process 1.07% (2/187) 6.12 0.000327 0.002805
GO:0009165 nucleotide biosynthetic process 2.67% (5/187) 2.97 0.000472 0.003904
GO:1901293 nucleoside phosphate biosynthetic process 2.67% (5/187) 2.97 0.000472 0.003904
GO:0009262 deoxyribonucleotide metabolic process 1.07% (2/187) 5.85 0.000488 0.003968
GO:0006090 pyruvate metabolic process 2.14% (4/187) 3.44 0.000519 0.00414
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity 1.07% (2/187) 5.63 0.000681 0.005165
GO:0004738 pyruvate dehydrogenase activity 1.07% (2/187) 5.63 0.000681 0.005165
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity 1.07% (2/187) 5.63 0.000681 0.005165
GO:0033865 nucleoside bisphosphate metabolic process 1.6% (3/187) 4.07 0.000752 0.005434
GO:0033875 ribonucleoside bisphosphate metabolic process 1.6% (3/187) 4.07 0.000752 0.005434
GO:0034032 purine nucleoside bisphosphate metabolic process 1.6% (3/187) 4.07 0.000752 0.005434
GO:1901137 carbohydrate derivative biosynthetic process 2.67% (5/187) 2.76 0.000901 0.006402
GO:0009117 nucleotide metabolic process 3.21% (6/187) 2.41 0.000999 0.006994
GO:0006753 nucleoside phosphate metabolic process 3.21% (6/187) 2.39 0.00108 0.007448
GO:0019752 carboxylic acid metabolic process 4.81% (9/187) 1.79 0.001331 0.00904
GO:0043436 oxoacid metabolic process 4.81% (9/187) 1.78 0.001372 0.009181
GO:0006082 organic acid metabolic process 4.81% (9/187) 1.78 0.001393 0.009185
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 1.07% (2/187) 5.12 0.001443 0.009379
GO:0003674 molecular_function 59.36% (111/187) 0.29 0.00188 0.012045
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water 1.07% (2/187) 4.74 0.002473 0.015626
GO:0055086 nucleobase-containing small molecule metabolic process 3.21% (6/187) 2.13 0.00261 0.016266
GO:0015934 large ribosomal subunit 1.6% (3/187) 3.38 0.003028 0.018617
GO:0006334 nucleosome assembly 1.07% (2/187) 4.53 0.003303 0.019777
GO:0034728 nucleosome organization 1.07% (2/187) 4.53 0.003303 0.019777
GO:1901135 carbohydrate derivative metabolic process 3.21% (6/187) 2.04 0.003597 0.021256
GO:0030036 actin cytoskeleton organization 1.07% (2/187) 4.44 0.003761 0.02194
GO:0044281 small molecule metabolic process 5.88% (11/187) 1.37 0.003946 0.022728
GO:0045010 actin nucleation 1.07% (2/187) 4.35 0.004247 0.023854
GO:0030029 actin filament-based process 1.07% (2/187) 4.35 0.004247 0.023854
GO:0044272 sulfur compound biosynthetic process 1.6% (3/187) 3.17 0.004609 0.025574
GO:0071840 cellular component organization or biogenesis 5.35% (10/187) 1.41 0.004808 0.026358
GO:0090407 organophosphate biosynthetic process 2.67% (5/187) 2.18 0.005231 0.028337
GO:0006633 fatty acid biosynthetic process 1.6% (3/187) 3.05 0.005808 0.029364
GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity 0.53% (1/187) 7.44 0.005765 0.029471
GO:0044070 regulation of monoatomic anion transport 0.53% (1/187) 7.44 0.005765 0.029471
GO:0016419 S-malonyltransferase activity 0.53% (1/187) 7.44 0.005765 0.029471
GO:0003862 3-isopropylmalate dehydrogenase activity 0.53% (1/187) 7.44 0.005765 0.029471
GO:0016420 malonyltransferase activity 0.53% (1/187) 7.44 0.005765 0.029471
GO:0042254 ribosome biogenesis 1.07% (2/187) 3.98 0.007078 0.035389
GO:0072330 monocarboxylic acid biosynthetic process 1.6% (3/187) 2.94 0.007178 0.0355
GO:0009152 purine ribonucleotide biosynthetic process 1.6% (3/187) 2.91 0.007473 0.036562
GO:0009150 purine ribonucleotide metabolic process 2.14% (4/187) 2.35 0.008079 0.039107
GO:0009260 ribonucleotide biosynthetic process 1.6% (3/187) 2.78 0.009738 0.045676
GO:0046390 ribose phosphate biosynthetic process 1.6% (3/187) 2.78 0.009738 0.045676
GO:0009259 ribonucleotide metabolic process 2.14% (4/187) 2.28 0.009596 0.04596
GO:0005515 protein binding 18.18% (34/187) 0.58 0.010166 0.046721
GO:0044085 cellular component biogenesis 1.6% (3/187) 2.76 0.01009 0.046847
GO:0019693 ribose phosphate metabolic process 2.14% (4/187) 2.25 0.010299 0.04686
GO:0022613 ribonucleoprotein complex biogenesis 1.07% (2/187) 3.68 0.010554 0.047544
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (187) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms