Coexpression cluster: Cluster_156 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0097159 organic cyclic compound binding 43.9% (36/82) 1.3 0.0 1.3e-05
GO:1901360 organic cyclic compound metabolic process 19.51% (16/82) 2.08 1e-06 4e-05
GO:0006725 cellular aromatic compound metabolic process 19.51% (16/82) 2.11 1e-06 4.2e-05
GO:0006139 nucleobase-containing compound metabolic process 18.29% (15/82) 2.19 1e-06 4.3e-05
GO:0006399 tRNA metabolic process 7.32% (6/82) 4.29 1e-06 4.7e-05
GO:0036094 small molecule binding 28.05% (23/82) 1.58 1e-06 4.8e-05
GO:0034641 cellular nitrogen compound metabolic process 20.73% (17/82) 1.93 2e-06 5.3e-05
GO:0140640 catalytic activity, acting on a nucleic acid 12.2% (10/82) 2.96 1e-06 5.8e-05
GO:0003674 molecular_function 74.39% (61/82) 0.62 2e-06 5.8e-05
GO:0090304 nucleic acid metabolic process 17.07% (14/82) 2.41 0.0 5.8e-05
GO:0046483 heterocycle metabolic process 19.51% (16/82) 2.14 1e-06 6.3e-05
GO:0016874 ligase activity 7.32% (6/82) 3.93 3e-06 8.7e-05
GO:0005488 binding 56.1% (46/82) 0.83 3e-06 9.3e-05
GO:0006520 amino acid metabolic process 8.54% (7/82) 3.42 4e-06 0.000101
GO:1901363 heterocyclic compound binding 26.83% (22/82) 1.52 4e-06 0.000103
GO:0000166 nucleotide binding 25.61% (21/82) 1.51 8e-06 0.000151
GO:1901265 nucleoside phosphate binding 25.61% (21/82) 1.51 8e-06 0.000151
GO:0003824 catalytic activity 46.34% (38/82) 0.96 7e-06 0.000151
GO:0008152 metabolic process 40.24% (33/82) 1.08 7e-06 0.000154
GO:0043168 anion binding 25.61% (21/82) 1.5 9e-06 0.000166
GO:0034660 ncRNA metabolic process 7.32% (6/82) 3.59 1.1e-05 0.000189
GO:0044238 primary metabolic process 35.37% (29/82) 1.12 2.2e-05 0.000351
GO:0071704 organic substance metabolic process 36.59% (30/82) 1.05 3.6e-05 0.000561
GO:0003676 nucleic acid binding 21.95% (18/82) 1.51 4.3e-05 0.000642
GO:0030554 adenyl nucleotide binding 21.95% (18/82) 1.48 5.5e-05 0.000755
GO:0140097 catalytic activity, acting on DNA 6.1% (5/82) 3.64 5.3e-05 0.000766
GO:0140101 catalytic activity, acting on a tRNA 4.88% (4/82) 4.12 8.6e-05 0.001137
GO:0032553 ribonucleotide binding 21.95% (18/82) 1.42 9.3e-05 0.001186
GO:0032559 adenyl ribonucleotide binding 20.73% (17/82) 1.47 9.8e-05 0.001211
GO:0097367 carbohydrate derivative binding 21.95% (18/82) 1.41 0.000107 0.001278
GO:0016853 isomerase activity 6.1% (5/82) 3.41 0.000112 0.001294
GO:0016070 RNA metabolic process 10.98% (9/82) 2.24 0.000124 0.001391
GO:0006082 organic acid metabolic process 8.54% (7/82) 2.6 0.000159 0.00158
GO:0043436 oxoacid metabolic process 8.54% (7/82) 2.61 0.000157 0.001604
GO:0019752 carboxylic acid metabolic process 8.54% (7/82) 2.61 0.000153 0.001607
GO:0017076 purine nucleotide binding 21.95% (18/82) 1.37 0.000149 0.001615
GO:0006807 nitrogen compound metabolic process 29.27% (24/82) 1.09 0.000196 0.001845
GO:0008150 biological_process 52.44% (43/82) 0.67 0.000192 0.001855
GO:0044237 cellular metabolic process 28.05% (23/82) 1.11 0.000218 0.001997
GO:0005524 ATP binding 18.29% (15/82) 1.49 0.000238 0.002133
GO:0032555 purine ribonucleotide binding 20.73% (17/82) 1.36 0.000257 0.002245
GO:0016879 ligase activity, forming carbon-nitrogen bonds 3.66% (3/82) 4.6 0.000264 0.002248
GO:0004812 aminoacyl-tRNA ligase activity 3.66% (3/82) 4.43 0.000371 0.002829
GO:0043038 amino acid activation 3.66% (3/82) 4.43 0.000371 0.002829
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.66% (3/82) 4.43 0.000371 0.002829
GO:0006418 tRNA aminoacylation for protein translation 3.66% (3/82) 4.43 0.000371 0.002829
GO:0043039 tRNA aminoacylation 3.66% (3/82) 4.43 0.000371 0.002829
GO:0006265 DNA topological change 2.44% (2/82) 5.93 0.000484 0.003606
GO:0003723 RNA binding 9.76% (8/82) 2.12 0.000521 0.003809
GO:0044281 small molecule metabolic process 9.76% (8/82) 2.1 0.00057 0.004081
GO:0008033 tRNA processing 3.66% (3/82) 4.17 0.000635 0.004372
GO:0003916 DNA topoisomerase activity 2.44% (2/82) 5.72 0.000649 0.004382
GO:0035639 purine ribonucleoside triphosphate binding 18.29% (15/82) 1.36 0.000627 0.004399
GO:0005694 chromosome 2.44% (2/82) 5.63 0.00074 0.004818
GO:0009081 branched-chain amino acid metabolic process 2.44% (2/82) 5.63 0.00074 0.004818
GO:0006259 DNA metabolic process 6.1% (5/82) 2.76 0.000899 0.005746
GO:0009982 pseudouridine synthase activity 2.44% (2/82) 5.31 0.001164 0.007313
GO:0140098 catalytic activity, acting on RNA 6.1% (5/82) 2.66 0.001222 0.007543
GO:0140657 ATP-dependent activity 7.32% (6/82) 2.33 0.001253 0.007604
GO:0071103 DNA conformation change 2.44% (2/82) 5.17 0.001411 0.008419
GO:0043167 ion binding 26.83% (22/82) 0.94 0.001623 0.009526
GO:0001522 pseudouridine synthesis 2.44% (2/82) 5.04 0.00168 0.009703
GO:0009987 cellular process 34.15% (28/82) 0.78 0.001782 0.010126
GO:0008094 ATP-dependent activity, acting on DNA 3.66% (3/82) 3.61 0.001934 0.010821
GO:0003697 single-stranded DNA binding 2.44% (2/82) 4.87 0.002126 0.011712
GO:0019808 polyamine binding 1.22% (1/82) 8.63 0.002528 0.012746
GO:0004160 dihydroxy-acid dehydratase activity 1.22% (1/82) 8.63 0.002528 0.012746
GO:0042597 periplasmic space 1.22% (1/82) 8.63 0.002528 0.012746
GO:0015846 polyamine transport 1.22% (1/82) 8.63 0.002528 0.012746
GO:0043139 5'-3' DNA helicase activity 1.22% (1/82) 8.63 0.002528 0.012746
GO:0009904 chloroplast accumulation movement 1.22% (1/82) 8.63 0.002528 0.012746
GO:0019867 outer membrane 2.44% (2/82) 4.63 0.00298 0.014819
GO:0008483 transaminase activity 2.44% (2/82) 4.38 0.004183 0.020237
GO:0016769 transferase activity, transferring nitrogenous groups 2.44% (2/82) 4.38 0.004183 0.020237
GO:0006400 tRNA modification 2.44% (2/82) 4.24 0.00509 0.020246
GO:0009902 chloroplast relocation 1.22% (1/82) 7.63 0.005049 0.020311
GO:0004816 asparagine-tRNA ligase activity 1.22% (1/82) 7.63 0.005049 0.020311
GO:0030174 regulation of DNA-templated DNA replication initiation 1.22% (1/82) 7.63 0.005049 0.020311
GO:0045181 glutamate synthase activity, NAD(P)H as acceptor 1.22% (1/82) 7.63 0.005049 0.020311
GO:0071163 DNA replication preinitiation complex assembly 1.22% (1/82) 7.63 0.005049 0.020311
GO:0004637 phosphoribosylamine-glycine ligase activity 1.22% (1/82) 7.63 0.005049 0.020311
GO:0004134 4-alpha-glucanotransferase activity 1.22% (1/82) 7.63 0.005049 0.020311
GO:0046608 carotenoid isomerase activity 1.22% (1/82) 7.63 0.005049 0.020311
GO:0051667 establishment of plastid localization 1.22% (1/82) 7.63 0.005049 0.020311
GO:0016040 glutamate synthase (NADH) activity 1.22% (1/82) 7.63 0.005049 0.020311
GO:0051644 plastid localization 1.22% (1/82) 7.63 0.005049 0.020311
GO:0019750 chloroplast localization 1.22% (1/82) 7.63 0.005049 0.020311
GO:0031119 tRNA pseudouridine synthesis 1.22% (1/82) 7.63 0.005049 0.020311
GO:0006421 asparaginyl-tRNA aminoacylation 1.22% (1/82) 7.63 0.005049 0.020311
GO:0050660 flavin adenine dinucleotide binding 3.66% (3/82) 3.1 0.005221 0.020316
GO:0034470 ncRNA processing 3.66% (3/82) 3.1 0.005221 0.020316
GO:0016779 nucleotidyltransferase activity 3.66% (3/82) 3.14 0.004912 0.023446
GO:0003896 DNA primase activity 1.22% (1/82) 7.04 0.007565 0.027081
GO:0006269 DNA replication, synthesis of RNA primer 1.22% (1/82) 7.04 0.007565 0.027081
GO:0015930 glutamate synthase activity 1.22% (1/82) 7.04 0.007565 0.027081
GO:0006537 glutamate biosynthetic process 1.22% (1/82) 7.04 0.007565 0.027081
GO:0004825 methionine-tRNA ligase activity 1.22% (1/82) 7.04 0.007565 0.027081
GO:0006431 methionyl-tRNA aminoacylation 1.22% (1/82) 7.04 0.007565 0.027081
GO:0031177 phosphopantetheine binding 1.22% (1/82) 7.04 0.007565 0.027081
GO:0004326 tetrahydrofolylpolyglutamate synthase activity 1.22% (1/82) 7.04 0.007565 0.027081
GO:0016866 intramolecular transferase activity 2.44% (2/82) 3.93 0.007712 0.027335
GO:0009451 RNA modification 3.66% (3/82) 2.87 0.008115 0.028482
GO:0009058 biosynthetic process 10.98% (9/82) 1.34 0.008947 0.031096
GO:0004084 branched-chain-amino-acid transaminase activity 1.22% (1/82) 6.63 0.010074 0.032489
GO:0051656 establishment of organelle localization 1.22% (1/82) 6.63 0.010074 0.032489
GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity 1.22% (1/82) 6.63 0.010074 0.032489
GO:0006529 asparagine biosynthetic process 1.22% (1/82) 6.63 0.010074 0.032489
GO:0017150 tRNA dihydrouridine synthase activity 1.22% (1/82) 6.63 0.010074 0.032489
GO:0006528 asparagine metabolic process 1.22% (1/82) 6.63 0.010074 0.032489
GO:0106413 RNA dihydrouridine synthase activity 1.22% (1/82) 6.63 0.010074 0.032489
GO:0004096 catalase activity 1.22% (1/82) 6.63 0.010074 0.032489
GO:0090329 regulation of DNA-templated DNA replication 1.22% (1/82) 6.31 0.012576 0.038155
GO:0072341 modified amino acid binding 1.22% (1/82) 6.31 0.012576 0.038155
GO:0051640 organelle localization 1.22% (1/82) 6.31 0.012576 0.038155
GO:0003725 double-stranded RNA binding 1.22% (1/82) 6.31 0.012576 0.038155
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor 1.22% (1/82) 6.31 0.012576 0.038155
GO:0043650 dicarboxylic acid biosynthetic process 1.22% (1/82) 6.31 0.012576 0.038155
GO:0046168 glycerol-3-phosphate catabolic process 1.22% (1/82) 6.31 0.012576 0.038155
GO:0051276 chromosome organization 2.44% (2/82) 3.54 0.012908 0.038831
GO:0006396 RNA processing 4.88% (4/82) 2.12 0.01374 0.040993
GO:0016117 carotenoid biosynthetic process 1.22% (1/82) 6.04 0.015073 0.042488
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 1.22% (1/82) 6.04 0.015073 0.042488
GO:0016109 tetraterpenoid biosynthetic process 1.22% (1/82) 6.04 0.015073 0.042488
GO:0009331 glycerol-3-phosphate dehydrogenase complex 1.22% (1/82) 6.04 0.015073 0.042488
GO:0006260 DNA replication 2.44% (2/82) 3.46 0.014389 0.042572
GO:0016053 organic acid biosynthetic process 3.66% (3/82) 2.55 0.014697 0.042777
GO:0046394 carboxylic acid biosynthetic process 3.66% (3/82) 2.55 0.014697 0.042777
GO:0009113 purine nucleobase biosynthetic process 1.22% (1/82) 5.82 0.017563 0.047274
GO:0031369 translation initiation factor binding 1.22% (1/82) 5.82 0.017563 0.047274
GO:0006072 glycerol-3-phosphate metabolic process 1.22% (1/82) 5.82 0.017563 0.047274
GO:0052646 alditol phosphate metabolic process 1.22% (1/82) 5.82 0.017563 0.047274
GO:0005975 carbohydrate metabolic process 6.1% (5/82) 1.73 0.017538 0.048673
GO:1901576 organic substance biosynthetic process 9.76% (8/82) 1.27 0.017514 0.048984
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (82) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms