Coexpression cluster: Cluster_71 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 55.47% (76/137) 0.82 0.0 2e-06
GO:0005515 protein binding 28.47% (39/137) 1.23 0.0 4.5e-05
GO:0003676 nucleic acid binding 21.17% (29/137) 1.46 1e-06 7.4e-05
GO:0090304 nucleic acid metabolic process 12.41% (17/137) 1.95 2e-06 0.000216
GO:0006139 nucleobase-containing compound metabolic process 13.87% (19/137) 1.79 3e-06 0.00022
GO:0003674 molecular_function 67.15% (92/137) 0.47 8e-06 0.000572
GO:0046483 heterocycle metabolic process 13.87% (19/137) 1.65 1e-05 0.000622
GO:0006725 cellular aromatic compound metabolic process 13.87% (19/137) 1.62 1.4e-05 0.000734
GO:1901360 organic cyclic compound metabolic process 13.87% (19/137) 1.59 1.8e-05 0.000855
GO:0008276 protein methyltransferase activity 2.19% (3/137) 4.95 0.000123 0.005226
GO:0097159 organic cyclic compound binding 30.66% (42/137) 0.79 0.000165 0.005865
GO:0034641 cellular nitrogen compound metabolic process 13.87% (19/137) 1.35 0.000162 0.006277
GO:0034660 ncRNA metabolic process 4.38% (6/137) 2.85 0.000198 0.006473
GO:0006259 DNA metabolic process 5.11% (7/137) 2.5 0.000258 0.007859
GO:0034470 ncRNA processing 3.65% (5/137) 3.1 0.000309 0.008218
GO:0008170 N-methyltransferase activity 2.19% (3/137) 4.52 0.000304 0.008627
GO:0018216 peptidyl-arginine methylation 1.46% (2/137) 5.89 0.000488 0.010386
GO:0018195 peptidyl-arginine modification 1.46% (2/137) 5.89 0.000488 0.010386
GO:0043414 macromolecule methylation 2.92% (4/137) 3.48 0.000473 0.011194
GO:0043170 macromolecule metabolic process 22.63% (31/137) 0.89 0.00047 0.011772
GO:0009451 RNA modification 3.65% (5/137) 2.87 0.000642 0.011887
GO:0008213 protein alkylation 2.19% (3/137) 4.11 0.000698 0.011902
GO:0006479 protein methylation 2.19% (3/137) 4.11 0.000698 0.011902
GO:0016274 protein-arginine N-methyltransferase activity 1.46% (2/137) 5.72 0.000625 0.012106
GO:0016273 arginine N-methyltransferase activity 1.46% (2/137) 5.72 0.000625 0.012106
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 1.46% (2/137) 5.3 0.001137 0.014673
GO:0009126 purine nucleoside monophosphate metabolic process 1.46% (2/137) 5.3 0.001137 0.014673
GO:0009127 purine nucleoside monophosphate biosynthetic process 1.46% (2/137) 5.3 0.001137 0.014673
GO:0009167 purine ribonucleoside monophosphate metabolic process 1.46% (2/137) 5.3 0.001137 0.014673
GO:0030515 snoRNA binding 1.46% (2/137) 5.3 0.001137 0.014673
GO:0032259 methylation 2.92% (4/137) 3.21 0.000939 0.01539
GO:0140640 catalytic activity, acting on a nucleic acid 5.84% (8/137) 1.9 0.001489 0.016268
GO:0004386 helicase activity 2.92% (4/137) 3.04 0.001465 0.016422
GO:0006310 DNA recombination 2.19% (3/137) 3.92 0.001043 0.016456
GO:0005524 ATP binding 13.87% (19/137) 1.09 0.001445 0.016634
GO:0003723 RNA binding 7.3% (10/137) 1.7 0.001109 0.016875
GO:0016070 RNA metabolic process 7.3% (10/137) 1.65 0.001438 0.017022
GO:0003724 RNA helicase activity 2.19% (3/137) 3.77 0.0014 0.017038
GO:0008186 ATP-dependent activity, acting on RNA 2.19% (3/137) 3.77 0.0014 0.017038
GO:0006807 nitrogen compound metabolic process 23.36% (32/137) 0.76 0.001622 0.017279
GO:0009156 ribonucleoside monophosphate biosynthetic process 1.46% (2/137) 4.89 0.002044 0.019789
GO:0009161 ribonucleoside monophosphate metabolic process 1.46% (2/137) 4.89 0.002044 0.019789
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.19% (3/137) 3.59 0.002015 0.020441
GO:0044238 primary metabolic process 26.28% (36/137) 0.69 0.002005 0.020834
GO:0071704 organic substance metabolic process 27.74% (38/137) 0.65 0.002339 0.022138
GO:0009124 nucleoside monophosphate biosynthetic process 1.46% (2/137) 4.72 0.002592 0.023001
GO:0009123 nucleoside monophosphate metabolic process 1.46% (2/137) 4.72 0.002592 0.023001
GO:0008152 metabolic process 29.2% (40/137) 0.62 0.002564 0.023745
GO:0032559 adenyl ribonucleotide binding 14.6% (20/137) 0.97 0.002936 0.025524
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 0.73% (1/137) 7.89 0.004223 0.025702
GO:0004401 histidinol-phosphatase activity 0.73% (1/137) 7.89 0.004223 0.025702
GO:0046037 GMP metabolic process 0.73% (1/137) 7.89 0.004223 0.025702
GO:0006177 GMP biosynthetic process 0.73% (1/137) 7.89 0.004223 0.025702
GO:0051060 pullulanase activity 0.73% (1/137) 7.89 0.004223 0.025702
GO:0035598 N6-threonylcarbomyladenosine methylthiotransferase activity 0.73% (1/137) 7.89 0.004223 0.025702
GO:0018026 peptidyl-lysine monomethylation 0.73% (1/137) 7.89 0.004223 0.025702
GO:0001054 RNA polymerase I activity 0.73% (1/137) 7.89 0.004223 0.025702
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.73% (1/137) 7.89 0.004223 0.025702
GO:0001056 RNA polymerase III activity 0.73% (1/137) 7.89 0.004223 0.025702
GO:0005657 replication fork 0.73% (1/137) 7.89 0.004223 0.025702
GO:0035600 tRNA methylthiolation 0.73% (1/137) 7.89 0.004223 0.025702
GO:0006364 rRNA processing 2.19% (3/137) 3.34 0.003281 0.027953
GO:0070828 heterochromatin organization 1.46% (2/137) 4.24 0.004984 0.028311
GO:0031507 heterochromatin formation 1.46% (2/137) 4.24 0.004984 0.028311
GO:0045814 negative regulation of gene expression, epigenetic 1.46% (2/137) 4.24 0.004984 0.028311
GO:0008150 biological_process 43.8% (60/137) 0.41 0.004776 0.028656
GO:0030554 adenyl nucleotide binding 14.6% (20/137) 0.89 0.005244 0.029014
GO:0008270 zinc ion binding 5.84% (8/137) 1.6 0.005188 0.029078
GO:0044237 cellular metabolic process 21.17% (29/137) 0.71 0.004936 0.029207
GO:0035639 purine ribonucleoside triphosphate binding 13.87% (19/137) 0.96 0.004005 0.029413
GO:0006260 DNA replication 2.19% (3/137) 3.3 0.003553 0.029676
GO:0016072 rRNA metabolic process 2.19% (3/137) 3.24 0.003986 0.029788
GO:0031048 regulatory ncRNA-mediated heterochromatin formation 1.46% (2/137) 4.43 0.00387 0.029974
GO:0080188 gene silencing by RNA-directed DNA methylation 1.46% (2/137) 4.43 0.00387 0.029974
GO:0140718 facultative heterochromatin formation 1.46% (2/137) 4.43 0.00387 0.029974
GO:0006346 DNA methylation-dependent heterochromatin formation 1.46% (2/137) 4.43 0.00387 0.029974
GO:0140657 ATP-dependent activity 5.11% (7/137) 1.82 0.003974 0.030232
GO:0009987 cellular process 29.2% (40/137) 0.55 0.005943 0.032459
GO:0031047 regulatory ncRNA-mediated gene silencing 1.46% (2/137) 4.08 0.006229 0.033587
GO:0032555 purine ribonucleotide binding 14.6% (20/137) 0.85 0.007114 0.037414
GO:0018193 peptidyl-amino acid modification 2.19% (3/137) 2.95 0.007037 0.037473
GO:0047661 amino-acid racemase activity 0.73% (1/137) 6.89 0.008429 0.037797
GO:0036361 racemase activity, acting on amino acids and derivatives 0.73% (1/137) 6.89 0.008429 0.037797
GO:0033061 DNA recombinase mediator complex 0.73% (1/137) 6.89 0.008429 0.037797
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex 0.73% (1/137) 6.89 0.008429 0.037797
GO:0004830 tryptophan-tRNA ligase activity 0.73% (1/137) 6.89 0.008429 0.037797
GO:0009019 obsolete tRNA (guanine-N1-)-methyltransferase activity 0.73% (1/137) 6.89 0.008429 0.037797
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.73% (1/137) 6.89 0.008429 0.037797
GO:0035596 methylthiotransferase activity 0.73% (1/137) 6.89 0.008429 0.037797
GO:0046835 carbohydrate phosphorylation 0.73% (1/137) 6.89 0.008429 0.037797
GO:0004335 galactokinase activity 0.73% (1/137) 6.89 0.008429 0.037797
GO:0006436 tryptophanyl-tRNA aminoacylation 0.73% (1/137) 6.89 0.008429 0.037797
GO:0050497 alkylthioltransferase activity 0.73% (1/137) 6.89 0.008429 0.037797
GO:0040029 epigenetic regulation of gene expression 1.46% (2/137) 3.84 0.008581 0.038079
GO:0097367 carbohydrate derivative binding 14.6% (20/137) 0.82 0.009139 0.040135
GO:0043167 ion binding 21.9% (30/137) 0.65 0.007746 0.040241
GO:0032553 ribonucleotide binding 14.6% (20/137) 0.83 0.008123 0.04169
GO:0019843 rRNA binding 1.46% (2/137) 3.72 0.010155 0.044143
GO:0140098 catalytic activity, acting on RNA 3.65% (5/137) 1.91 0.010904 0.04692
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (137) (download table)

InterPro Domains

GO Terms

CAZYmes

Family Terms